IslandPathversion 1.0

IslandPath Analysis: Prochlorococcus marinus subsp. marinus str. CCMP1375



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.01 STD DEV: 3.99
Prochlorococcus marinus subsp. marinus str. CCMP1375, complete genome - 1..1751080
1883 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1696	 41.48	+1	1557666..1558205	-	179	33241147	rplF	Pro1698	-	50S ribosomal protein L6
1697	 42.54	+1	1558218..1558619	-	133	33241148	rpsH	Pro1699	-	30S ribosomal protein S8
1698	 40.56	0	1558624..1559163	-	179	33241149	rplE	Pro1700	-	50S ribosomal protein L5
1699	 36.13	0	1559248..1559604	-	118	33241150	rplX	Pro1701	-	50S ribosomal protein L24
1700	 40.98	0	1559605..1559970	-	121	33241151	rplN	Pro1702	-	50S ribosomal protein L14
1701	 41.57	+1	1559967..1560233	-	88	33241152	rpsQ	Pro1703	-	ribosomal protein S17
1702	 43.48	+1	1560254..1560460	-	68	33241153	rpmC	Pro1704	-	ribosomal protein L29
1703	 45.17	+2	1560464..1561012	-	182	33241154	rplP	Pro1705	-	50S ribosomal protein L16
1704	 42.62	+1	1561025..1561756	-	243	33241155	rpsC	Pro1706	-	30S ribosomal protein S3
1705	 42.67	+1	1561756..1562130	-	124	33241156	rplV	Pro1707	-	50S ribosomal protein L22
1706	 40.22	0	1562133..1562408	-	91	33241157	rpsS	Pro1708	-	30S ribosomal protein S19
1707	 46.30	+2	1562444..1563307	-	287	33241158	rplB	Pro1709	-	50S ribosomal protein L2
1708	 40.78	0	1563310..1563618	-	102	33241159	rplW	Pro1710	-	50S ribosomal protein L23
1709	 41.04	+1	1563611..1564246	-	211	33241160	rplD	Pro1711	-	50S ribosomal protein L4
1710	 41.67	+1	1564246..1564905	-	219	33241161	rplC	Pro1712	-	50S ribosomal protein L3
1711	 40.96	0	1565298..1565756	+	152	33241162	-	Pro1713	-	NADH dehydrogenase I subunit N
1712	 37.45	0	1565810..1566805	+	331	33241163	hycB	Pro1714	-	Fe-S cluster containing protein
1713	 39.77	0	1567044..1567820	+	258	33241164	-	Pro1715	-	HAD family phosphatase
1714	 42.11	+1	1567932..1569071	+	379	33241165	recA	Pro1716	-	recombinase A
1715	 41.67	+1	1569088..1569339	-	83	33241166	-	Pro1717	-	hypothetical protein
1716	 39.69	0	1569396..1570826	-	476	33241167	dinG	Pro1718	-	Rad3-related DNA helicase
1717	 37.49	0	1570909..1571775	+	288	33241168	tyrA	Pro1719	-	arogenate dehydrogenase
1718	 38.80	0	1571764..1573263	-	499	33241169	-	Pro1720	-	phytoene dehydrogenase/carotenoid isomerase
1719	 36.70	0	1573302..1574192	+	296	33241170	-	Pro1721	-	fructosamine/homoserine kinase family protein
1720	 40.44	0	1574201..1574566	-	121	33241171	-	Pro1722	-	hypothetical protein
1721	 34.28	0	1574688..1575215	+	175	33241172	-	Pro1723	-	metal-dependent protease
1722	 32.63	-1	1575228..1576367	+	379	33241173	thiF	Pro1724	-	dinucleotide-utilizing protein
1723	 42.76	+1	1576382..1577590	-	402	33241174	ctuR	Pro1725	-	hypothetical protein
1724	 36.48	0	1577671..1578528	+	285	33241175	-	Pro1726	-	PP family ATPase
1725	 39.74	0	1578571..1579038	-	155	33241176	speD	Pro1727	-	S-adenosylmethionine decarboxylase proenzyme
1726	 40.45	0	1579064..1580131	-	355	33241177	recF	Pro1728	-	recombinational DNA repair ATPase (RecF pathway)
1727	 35.32	0	1580351..1580803	-	150	33241178	-	Pro1729	-	hypothetical protein
1728	 39.39	0	1580807..1583812	-	1001	33241179	ppc	Pro1730	-	phosphoenolpyruvate carboxylase
1729	 35.17	0	1583809..1584954	-	381	33241180	-	Pro1731	-	hypothetical protein
1730	 38.87	0	1584958..1586475	-	505	33241181	trpE	Pro1732	-	anthranilate/para-aminobenzoate synthase component I
1731	 39.20	0	1586540..1586965	-	141	33241182	psaD	Pro1733	-	photosystem I protein PsaD
1732	 38.72	0	1587077..1588450	-	457	33241183	-	Pro1734	-	Signal transduction histidine kinase
1733	 32.71	-1	1588450..1589730	-	426	33241184	ftsW	Pro1735	-	cell division membrane protein
1734	 39.81	0	1589731..1590810	-	359	33241185	mrp	Pro1736	-	ATPase
1735	 39.83	0	1590897..1591928	+	343	33241186	hemF	Pro1737	-	coproporphyrinogen III oxidase
1736	 39.05	0	1591876..1592697	-	273	33241187	-	Pro1738	-	dehydrogenase
1737	 38.74	0	1592704..1593258	-	184	33241188	-	Pro1739	-	hypothetical protein
1738	 36.28	0	1593460..1594104	+	214	33241189	rnd	Pro1740	-	putative ribonuclease D
1739	 31.48	-1	1594101..1594370	-	89	33241190	-	Pro1741	-	hypothetical protein
1740	 39.59	0	1594423..1595700	-	425	33241191	-	Pro1742	-	Lipid A disaccharide synthetase related enzyme
1741	 35.76	0	1596595..1596759	-	54	33241192	-	Pro1743	-	Zn ribbon-like protein
1742	 42.19	+1	1596781..1597401	-	206	33241193	-	Pro1744	-	hypothetical protein
1743	 39.98	0	1597573..1598610	-	345	33241194	purM	Pro1745	-	phosphoribosylaminoimidazole synthetase
1744	 36.79	0	1598748..1600307	+	519	33241195	cmk	Pro1746	-	bifunctional pantoate ligase/cytidylate kinase
1745	 32.91	-1	1600300..1600770	-	156	33241196	wzb	Pro1747	-	protein-tyrosine-phosphatase
1746	 33.20	0	1600861..1601634	-	257	33241197	pebB	Pro1748	-	phycoerythrobilin:ferredoxin oxidoreductase
1747	 33.75	0	1601635..1602348	-	237	161407959	pebA	Pro1749	-	dihydrobiliverdin:ferredoxin oxidoreductase
1748	 34.17	0	1602445..1603158	-	237	33241199	ho1	Pro1750	-	Heme oxygenase
1749	 42.25	+1	1603248..1603673	-	141	33241200	-	Pro1751	-	hypothetical protein
1750	 36.63	0	1603833..1605257	+	474	33241201	icd	Pro1752	-	isocitrate dehydrogenase
1751	 32.38	-1	1605278..1606636	-	452	33241202	-	Pro1753	-	hypothetical protein
1752	 42.20	+1	1606671..1607843	-	390	33241203	lldD	Pro1754	-	L-lactate dehydrogenase (FMN-dependent) related enzyme
1753	 31.98	-1	1607961..1609661	-	566	33241204	dld	Pro1755	-	D-lactate dehydrogenase
1754	 34.73	0	1609784..1610641	-	285	33241205	galM	Pro1756	-	galactose mutarotase-like protein
1755	 39.29	0	1610658..1611563	-	301	33241206	mhpC	Pro1757	-	alpha/beta fold family hydrolase
1756	 40.03	0	1611686..1613059	-	457	33241207	kefB	Pro1758	-	Na+/H+ antiporter
1757	 37.38	0	1613224..1615746	+	840	33241208	glgP	Pro1759	-	phosphorylase
1758	 37.47	0	1615754..1616212	-	152	33241209	-	Pro1760	-	hypothetical protein
1759	 42.42	+1	1616283..1616579	-	98	33241210	-	Pro1761	-	hypothetical protein
1760	 36.80	0	1617217..1617966	+	249	33241211	rnc	Pro1762	-	dsRNA-specific ribonuclease/ribonuclease III
1761	 34.41	0	1617963..1618148	-	61	33241212	-	Pro1763	-	hypothetical protein
1762	 34.27	0	1618196..1618726	+	176	33241213	rimM	Pro1764	-	16S rRNA-processing protein
1763	 36.33	0	1618775..1620211	+	478	33241214	manC	Pro1765	-	mannose-1-phosphate guanylyltransferase
1764	 37.64	0	1620235..1622139	-	634	33241215	glmS	Pro1766	-	D-fructose-6-phosphate amidotransferase
1765	 46.75	+2	1622219..1622464	-	81	33241216	psaC	Pro1767	-	photosystem I subunit VII
1766	 44.44	+1	1622599..1622841	+	80	33241217	acpP	Pro1768	-	acyl carrier protein
1767	 43.03	+1	1622849..1624096	+	415	33241218	fabB	Pro1769	-	3-oxoacyl-[acyl-carrier-protein] synthase II
1768	 40.60	0	1624148..1626157	+	669	33241219	tktA	Pro1770	-	transketolase
1769	 39.09	0	1626184..1627590	-	468	33241220	thiC	Pro1771	-	thiamine biosynthesis protein ThiC
1770	 34.70	0	1627791..1628009	-	72	33241221	-	Pro1772	-	hypothetical protein
1771	 39.93	0	1628013..1629209	-	398	33241222	-	Pro1773	-	N-acyl-L-amino acid amidohydrolase
1772	 40.08	0	1629206..1629991	-	261	33241223	-	Pro1774	-	TPR repeat-containing protein
1773	 39.50	0	1629988..1631058	-	356	33241224	ruvB	Pro1775	-	Holliday junction DNA helicase B
1774	 34.34	0	1631109..1631606	+	165	33241225	smpB	Pro1776	-	SsrA-binding protein
1775	 33.33	0	1631651..1631881	+	76	33241226	-	Pro1777	-	hypothetical protein
1776	 49.24	+2	1632035..1632298	-	87	33241227	-	Pro1778	-	hypothetical protein
1777	 39.23	0	1632353..1633861	-	502	33241228	lysS	Pro1779	-	lysyl-tRNA synthetase
1778	 43.46	+1	1633934..1634743	-	269	33241229	-	Pro1780	-	two-component response regulator
1779	 36.31	0	1634977..1635480	-	167	33241230	-	Pro1781	-	hypothetical protein
1780	 36.41	0	1635477..1636223	-	248	33241231	mreC	Pro1782	-	cell shape-determining protein
1781	 42.45	+1	1636228..1637280	-	350	33241232	mreB	Pro1783	-	Actin-like ATPase
1782	 34.87	0	1637412..1637801	+	129	33241233	ssb	Pro1784	-	single-strand DNA-binding protein
1783	 35.46	0	1637798..1638454	-	218	33241234	dedA	Pro1785	-	hypothetical protein
1784	 37.04	0	1638488..1639918	-	476	33241235	SAM1	Pro1786	-	S-adenosyl-L-homocysteine hydrolase
1785	 36.09	0	1639954..1640460	+	168	33241236	-	Pro1787	-	P-loop hydrolase
1786	 40.22	0	1640409..1641425	-	338	33241237	rbsK	Pro1788	-	ribokinase family sugar kinase
1787	 35.41	0	1641463..1642665	-	400	33241238	mutY	Pro1789	-	A/G-specific DNA glycosylase
1788	 33.00	-1	1642645..1643556	+	303	33241239	mhpC	Pro1790	-	putative alpha/beta hydrolase superfamily
1789	 37.99	0	1643541..1644527	-	328	33241240	rpoD	Pro1791	-	DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
1790	 41.10	+1	1644650..1646065	-	471	33241241	mgtE	Pro1792	-	Mg2+/Co2+ transporter
1791	 33.60	0	1646098..1646472	-	124	33241242	crcB	Pro1793	-	hypothetical protein
1792	 29.01	-2	1646465..1646857	-	130	33241243	crcB	Pro1794	-	hypothetical protein
1793	 36.06	0	1646850..1647179	-	109	33241244	-	Pro1795	-	hypothetical protein
1794	 36.87	0	1647189..1649165	-	658	33241245	gyrB	Pro1796	-	DNA gyrase subunit B
1795	 34.67	0	1649336..1650235	+	299	33241246	miaA	Pro1797	-	tRNA delta-2-isopentenylpyrophosphate transferase
37.01	MEAN

3.99	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.