IslandPathversion 1.0

IslandPath Analysis: Prochlorococcus marinus subsp. marinus str. CCMP1375



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.01 STD DEV: 3.99
Prochlorococcus marinus subsp. marinus str. CCMP1375, complete genome - 1..1751080
1883 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1637	 38.69	0	1494174..1496078	-	634	33241088	rpoC	Pro1639	-	DNA-directed RNA polymerase subunit gamma
1638	 39.29	0	1496129..1499419	-	1096	33241089	rpoB	Pro1640	-	DNA-directed RNA polymerase subunit beta
1639	 39.54	0	1499696..1500484	-	262	33241090	tatD	Pro1641	-	putative deoxyribonuclease, TatD family
1640	 39.00	0	1500568..1500867	-	99	33241091	rpsT	Pro1642	-	30S ribosomal protein S20
1641	 38.62	0	1501001..1502323	+	440	33241092	hisD	Pro1643	-	histidinol dehydrogenase
1642	 39.50	0	1502301..1503014	-	237	33241093	rpi	Pro1644	-	ribose 5-phosphate isomerase
1643	 39.16	0	1503055..1504170	-	371	33241094	degQ	Pro1645	-	trypsin-like serine protease
1644	 33.33	0	1504390..1504857	+	155	33241095	-	Pro1646	-	hypothetical protein
1645	 41.30	+1	1504905..1506323	+	472	33241096	nusA	Pro1647	-	transcription elongation factor NusA
1646	 40.86	0	1506320..1506598	+	92	33241097	-	Pro1648	-	nucleic-acid-binding protein implicated in transcription termination
1647	 42.58	+1	1506662..1510066	+	1134	33241098	infB	Pro1649	-	translation initiation factor IF-2
1648	 36.71	0	1510153..1510389	-	78	33241099	-	Pro1650	-	hypothetical protein
1649	 35.00	0	1511302..1511661	-	119	33241100	-	Pro1651	-	hypothetical protein
1650	 37.76	0	1511883..1513508	+	541	33241101	-	Pro1652	-	Fe-S oxidoreductase
1651	 37.92	0	1513430..1514344	-	304	33241102	-	Pro1653	-	metal-dependent membrane protease
1652	 44.55	+1	1514341..1514652	-	103	33241103	clpS	Pro1654	-	ATP-dependent Clp protease adaptor protein ClpS
1653	 40.59	0	1514714..1515940	-	408	33241104	-	Pro1655	-	L,L-diaminopimelate aminotransferase
1654	 38.10	0	1516036..1518720	+	894	33241105	-	Pro1656	-	SAM radical enzyme
1655	 34.53	0	1518963..1520798	+	611	33241106	cafA	Pro1657	-	ribonuclease G/E
1656	 38.54	0	1520802..1521377	+	191	33241107	rnhB	Pro1658	-	ribonuclease HII
1657	 38.18	0	1521397..1521933	-	178	33241108	-	Pro1659	-	hypothetical protein
1658	 37.37	0	1521967..1522809	+	280	33241109	pheA	Pro1660	-	chorismate mutase-prephenate dehydratase
1659	 33.76	0	1522811..1523740	-	309	33241110	-	Pro1661	-	ubiE/COQ5 family methyltransferase
1660	 39.82	0	1523740..1524402	-	220	33241111	-	Pro1662	-	ATP-dependent protease La (LON) domain
1661	 40.81	0	1524466..1524786	-	106	33241112	rpsJ	Pro1663	-	30S ribosomal protein S10
1662	 43.33	+1	1524921..1526120	-	399	33241113	tuf	Pro1664	-	elongation factor Tu
1663	 40.94	0	1526167..1528242	-	691	33241114	fusA	Pro1665	-	elongation factor G
1664	 42.68	+1	1528335..1528805	-	156	33241115	rpsG	Pro1666	-	30S ribosomal protein S7
1665	 46.93	+2	1528848..1529222	-	124	33241116	rpsL	Pro1667	-	30S ribosomal protein S12
1666	 38.14	0	1529478..1534052	+	1524	33241117	glsF	Pro1668	-	ferredoxin-dependent glutamate synthase
1667	 32.73	-1	1534067..1534399	+	110	33241118	-	Pro1669	-	hypothetical protein
1668	 37.74	0	1534377..1535261	-	294	33241119	lipA	Pro1670	-	lipoyl synthase
1669	 39.68	0	1535300..1537063	-	587	33241120	cobJ	Pro1671	-	precorrin-3B methylase
1670	 44.70	+1	1537494..1539815	+	773	33241121	psaA	Pro1672	-	photosystem I P700 chlorophyll a apoprotein A1
1671	 42.96	+1	1539838..1542081	+	747	33241122	psaB	Pro1673	-	photosystem I P700 chlorophyll a apoprotein A2
1672	 37.38	0	1542127..1543041	-	304	33241123	-	Pro1674	-	hypothetical protein
1673	 35.19	0	1543060..1543812	+	250	33241124	spr	Pro1675	-	cell wall-associated hydrolase
1674	 33.44	0	1543842..1544792	+	316	33241125	wcaA	Pro1676	-	glycosyltransferase
1675	 37.39	0	1544762..1545229	-	155	33241126	-	Pro1677	-	hypothetical protein
1676	 52.14	+2	1545356..1545472	+	38	33241127	psaI	Pro1678	-	photosystem I reaction center subunit VIII
1677	 43.17	+1	1545518..1546117	+	199	33241128	psaL	Pro1679	-	photosystem I reaction center protein subunit XI
1678	 26.24	-2	1546214..1546354	+	46	33241129	-	Pro1680	-	hypothetical protein
1679	 39.97	0	1546581..1547741	-	386	33241130	alr	Pro1681	-	alanine racemase
1680	 38.21	0	1547801..1548313	+	170	33241131	mcrA	Pro1682	-	HNH endonuclease family protein
1681	 40.35	0	1548317..1549414	-	365	33241132	prfA	Pro1683	-	peptide chain release factor 1
1682	 39.65	0	1549450..1549734	-	94	33241133	rpmE	Pro1684	-	50S ribosomal protein L31
1683	 41.36	+1	1549778..1550188	-	136	33241134	rpsI	Pro1685	-	30S ribosomal protein S9
1684	 39.51	0	1550185..1550637	-	150	33241135	rplM	Pro1686	-	50S ribosomal protein L13
1685	 37.13	0	1550793..1551662	-	289	33241136	truA	Pro1687	-	tRNA pseudouridine synthase A
1686	 41.31	+1	1551687..1552037	-	116	33241137	rplQ	Pro1688	-	50S ribosomal protein L17
1687	 42.81	+1	1552074..1553012	-	312	33241138	rpoA	Pro1689	-	DNA-directed RNA polymerase subunit alpha
1688	 47.07	+2	1553076..1553468	-	130	33241139	rpsK	Pro1690	-	30S ribosomal protein S11
1689	 45.90	+2	1553538..1553903	-	121	33241140	rpsM	Pro1691	-	30S ribosomal protein S13
1690	 46.15	+2	1554020..1554136	-	38	33241141	rpmJ	Pro1692	-	50S ribosomal protein L36
1691	 35.52	0	1554183..1554731	-	182	33241142	adk	Pro1693	-	adenylate kinase
1692	 38.11	0	1554763..1556082	-	439	33241143	secY	Pro1694	-	preprotein translocase subunit SecY
1693	 39.25	0	1556149..1556604	-	151	33241144	rplO	Pro1695	-	50S ribosomal protein L15
1694	 43.55	+1	1556611..1557246	-	211	33241145	rpsE	Pro1696	-	30S ribosomal protein S5
1695	 40.11	0	1557263..1557631	-	122	33241146	rplR	Pro1697	-	50S ribosomal protein L18
1696	 41.48	+1	1557666..1558205	-	179	33241147	rplF	Pro1698	-	50S ribosomal protein L6
1697	 42.54	+1	1558218..1558619	-	133	33241148	rpsH	Pro1699	-	30S ribosomal protein S8
1698	 40.56	0	1558624..1559163	-	179	33241149	rplE	Pro1700	-	50S ribosomal protein L5
1699	 36.13	0	1559248..1559604	-	118	33241150	rplX	Pro1701	-	50S ribosomal protein L24
1700	 40.98	0	1559605..1559970	-	121	33241151	rplN	Pro1702	-	50S ribosomal protein L14
1701	 41.57	+1	1559967..1560233	-	88	33241152	rpsQ	Pro1703	-	ribosomal protein S17
1702	 43.48	+1	1560254..1560460	-	68	33241153	rpmC	Pro1704	-	ribosomal protein L29
1703	 45.17	+2	1560464..1561012	-	182	33241154	rplP	Pro1705	-	50S ribosomal protein L16
1704	 42.62	+1	1561025..1561756	-	243	33241155	rpsC	Pro1706	-	30S ribosomal protein S3
1705	 42.67	+1	1561756..1562130	-	124	33241156	rplV	Pro1707	-	50S ribosomal protein L22
1706	 40.22	0	1562133..1562408	-	91	33241157	rpsS	Pro1708	-	30S ribosomal protein S19
1707	 46.30	+2	1562444..1563307	-	287	33241158	rplB	Pro1709	-	50S ribosomal protein L2
1708	 40.78	0	1563310..1563618	-	102	33241159	rplW	Pro1710	-	50S ribosomal protein L23
1709	 41.04	+1	1563611..1564246	-	211	33241160	rplD	Pro1711	-	50S ribosomal protein L4
1710	 41.67	+1	1564246..1564905	-	219	33241161	rplC	Pro1712	-	50S ribosomal protein L3
1711	 40.96	0	1565298..1565756	+	152	33241162	-	Pro1713	-	NADH dehydrogenase I subunit N
1712	 37.45	0	1565810..1566805	+	331	33241163	hycB	Pro1714	-	Fe-S cluster containing protein
1713	 39.77	0	1567044..1567820	+	258	33241164	-	Pro1715	-	HAD family phosphatase
1714	 42.11	+1	1567932..1569071	+	379	33241165	recA	Pro1716	-	recombinase A
1715	 41.67	+1	1569088..1569339	-	83	33241166	-	Pro1717	-	hypothetical protein
1716	 39.69	0	1569396..1570826	-	476	33241167	dinG	Pro1718	-	Rad3-related DNA helicase
1717	 37.49	0	1570909..1571775	+	288	33241168	tyrA	Pro1719	-	arogenate dehydrogenase
1718	 38.80	0	1571764..1573263	-	499	33241169	-	Pro1720	-	phytoene dehydrogenase/carotenoid isomerase
1719	 36.70	0	1573302..1574192	+	296	33241170	-	Pro1721	-	fructosamine/homoserine kinase family protein
1720	 40.44	0	1574201..1574566	-	121	33241171	-	Pro1722	-	hypothetical protein
1721	 34.28	0	1574688..1575215	+	175	33241172	-	Pro1723	-	metal-dependent protease
1722	 32.63	-1	1575228..1576367	+	379	33241173	thiF	Pro1724	-	dinucleotide-utilizing protein
1723	 42.76	+1	1576382..1577590	-	402	33241174	ctuR	Pro1725	-	hypothetical protein
1724	 36.48	0	1577671..1578528	+	285	33241175	-	Pro1726	-	PP family ATPase
1725	 39.74	0	1578571..1579038	-	155	33241176	speD	Pro1727	-	S-adenosylmethionine decarboxylase proenzyme
1726	 40.45	0	1579064..1580131	-	355	33241177	recF	Pro1728	-	recombinational DNA repair ATPase (RecF pathway)
1727	 35.32	0	1580351..1580803	-	150	33241178	-	Pro1729	-	hypothetical protein
1728	 39.39	0	1580807..1583812	-	1001	33241179	ppc	Pro1730	-	phosphoenolpyruvate carboxylase
1729	 35.17	0	1583809..1584954	-	381	33241180	-	Pro1731	-	hypothetical protein
1730	 38.87	0	1584958..1586475	-	505	33241181	trpE	Pro1732	-	anthranilate/para-aminobenzoate synthase component I
1731	 39.20	0	1586540..1586965	-	141	33241182	psaD	Pro1733	-	photosystem I protein PsaD
1732	 38.72	0	1587077..1588450	-	457	33241183	-	Pro1734	-	Signal transduction histidine kinase
1733	 32.71	-1	1588450..1589730	-	426	33241184	ftsW	Pro1735	-	cell division membrane protein
1734	 39.81	0	1589731..1590810	-	359	33241185	mrp	Pro1736	-	ATPase
1735	 39.83	0	1590897..1591928	+	343	33241186	hemF	Pro1737	-	coproporphyrinogen III oxidase
1736	 39.05	0	1591876..1592697	-	273	33241187	-	Pro1738	-	dehydrogenase
37.01	MEAN

3.99	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.