IslandPathversion 1.0

IslandPath Analysis: Prochlorococcus marinus subsp. marinus str. CCMP1375



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.01 STD DEV: 3.99
Prochlorococcus marinus subsp. marinus str. CCMP1375, complete genome - 1..1751080
1883 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
120	 34.39	0	127743..128684	-	313	33239572	-	Pro0120	-	hypothetical protein
121	 37.47	0	128876..130180	+	434	33239573	miaB	Pro0121	-	2-methylthioadenine synthetase
122	 35.48	0	130282..130374	-	30	161407961	petL	Pro0122	-	cytochrome b6-f complex subunit PetL
123	 36.87	0	130443..130838	-	131	33239575	folP	Pro0123	-	hypothetical protein
124	 21.93	-2	130998..131225	-	75	33239576	-	Pro0124	-	hypothetical protein
125	 34.69	0	131248..132423	-	391	33239577	-	Pro0125	-	hypothetical protein
126	 37.05	0	132420..133091	-	223	33239578	ribD	Pro0126	-	pyrimidine reductase
127	 37.73	0	133098..134006	-	302	33239579	-	Pro0127	-	6-pyruvoyl tetrahydropterin synthase
128	 36.82	0	134061..134633	+	190	33239580	aroK	Pro0128	-	shikimate kinase
129	 35.98	0	134614..134877	-	87	33239581	-	Pro0129	-	hypothetical protein
130	 37.05	0	134889..135614	-	241	33239582	gst	Pro0130	-	putative glutathione S-transferase
131	 35.75	0	135674..135880	+	68	33239583	-	Pro0131	-	hypothetical protein
132	 38.17	0	135883..136275	+	130	33239584	rbfA	Pro0132	-	ribosome-binding factor A
133	 38.36	0	136278..137927	+	549	33239585	cglX	Pro0133	-	Beta-glucosidase-related glycosidase
134	 34.95	0	137961..138764	+	267	33239586	hemD	Pro0134	-	putative uroporphyrinogen III synthase
135	 33.98	0	138772..139233	-	153	33239587	-	Pro0135	-	putative integral membrane protein
136	 38.88	0	139235..140695	-	486	33239588	crtQ	Pro0136	-	zeta-carotene desaturase
137	 39.90	0	140806..141201	+	131	33239589	iscA	Pro0137	-	hypothetical protein
138	 36.67	0	141244..141663	+	139	33239590	-	Pro0138	-	hypothetical protein
139	 39.48	0	141665..142867	+	400	33239591	-	Pro0139	-	hypothetical protein
140	 39.72	0	142902..143840	-	312	33239592	-	Pro0140	-	putative cell division inhibitor
141	 41.00	0	143921..144181	+	86	33239593	-	Pro0141	-	hypothetical protein
142	 33.18	0	144198..144854	-	218	33239594	cbpA	Pro0142	-	putative heat shock protein DnaJ
143	 41.38	+1	144878..145846	-	322	33239595	cysK	Pro0143	-	cysteine synthase
144	 41.67	+1	145956..146219	+	87	33239596	-	Pro0144	-	hypothetical protein
145	 38.34	0	146225..146923	+	232	33239597	cbiO	Pro0145	-	ABC-type cobalt transport system ATPase component
146	 32.30	-1	147584..147970	-	128	33239598	-	Pro0146	-	hypothetical protein
147	 34.44	0	148013..148735	-	240	33239599	-	Pro0147	-	hypothetical protein
148	 27.60	-2	148813..149457	-	214	33239600	-	Pro0148	-	hypothetical protein
149	 34.94	0	149466..150461	-	331	33239601	-	Pro0149	-	membrane protease family stomatin/prohibitin-like protein
150	 38.67	0	150619..151386	+	255	33239602	ompR	Pro0150	-	two-component response regulator
151	 29.97	-1	151418..152368	-	316	33239603	holB	Pro0151	-	DNA polymerase III subunit delta'
152	 34.69	0	152355..153017	-	220	33239604	tmk	Pro0152	-	thymidylate kinase
153	 35.61	0	153014..155338	-	774	33239605	zntA	Pro0153	-	putative P-type ATPase transporter for copper
154	 36.97	0	155480..156001	+	173	33239606	-	Pro0154	-	photosystem I assembly protein Ycf3
155	 39.25	0	156021..157406	-	461	33239607	sms	Pro0155	-	DNA repair protein RadA
156	 42.61	+1	157514..158257	+	247	33239608	ompR	Pro0156	-	two-component response regulator
157	 40.73	0	158268..159578	+	436	33239609	plsX	Pro0157	-	putative glycerol-3-phosphate acyltransferase PlsX
158	 41.20	+1	159641..160657	+	338	33239610	fabH	Pro0158	-	3-oxoacyl-(acyl carrier protein) synthase III
159	 40.91	0	160685..161581	+	298	33239611	fabD	Pro0159	-	(acyl-carrier-protein) S-malonyltransferase
160	 41.62	+1	161650..162240	+	196	33239612	plsC	Pro0160	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
161	 31.28	-1	162248..162832	-	194	33239613	-	Pro0161	-	hypothetical protein
162	 32.74	-1	162838..163509	-	223	33239614	-	Pro0162	-	hypothetical protein
163	 40.48	0	163506..163757	-	83	33239615	-	Pro0163	-	metal-binding cluster containing protein
164	 36.06	0	163750..164997	+	415	33239616	pcnB	Pro0164	-	tRNA nucleotidyltransferase/poly(A) polymerase
165	 40.46	0	165060..165494	+	144	33239617	-	Pro0165	-	RNA-binding protein
166	 37.50	0	165530..166441	-	303	33239618	crtB	Pro0166	-	squalene and phytoene synthase
167	 35.89	0	166480..167889	-	469	33239619	pds	Pro0167	-	phytoene dehydrogenase, phytoene desaturase
168	 37.07	0	167991..168338	+	115	33239620	-	Pro0168	-	NADH dehydrogenase I subunit M
169	 39.56	0	168335..168976	+	213	33239621	-	Pro0169	-	hypothetical protein
170	 39.31	0	168990..169943	-	317	33239622	rbcR	Pro0170	-	putative Rubisco transcriptional regulator
171	 37.80	0	170042..170779	+	245	33239623	-	Pro0171	-	hypothetical protein
172	 39.47	0	170814..172817	+	667	33239624	ndhF	Pro0172	-	NAD(P)H-quinone oxidoreductase subunit F
173	 37.99	0	172918..174591	+	557	33239625	ndhD	Pro0173	-	NAD(P)H-quinone oxidoreductase subunit 4
174	 41.13	+1	174835..175719	+	294	33239626	-	Pro0174	-	hypothetical protein
175	 38.46	0	175769..176938	+	389	33239627	GCD1	Pro0175	-	putative sugar-phosphate nucleotidyl transferase
176	 39.04	0	176919..177812	-	297	33239628	metF	Pro0176	-	methylenetetrahydrofolate reductase
177	 39.36	0	177893..178174	+	93	33239629	csgD	Pro0177	-	transcriptional regulator
178	 40.80	0	178128..178328	-	66	33239630	-	Pro0178	-	hypothetical protein
179	 35.53	0	178421..178921	-	166	33239631	-	Pro0179	-	hypothetical protein
180	 36.58	0	178921..179844	-	307	33239632	ppnK	Pro0180	-	inorganic polyphosphate/ATP-NAD kinase
181	 33.33	0	179861..180187	-	108	33239633	ndhE	Pro0181	-	NADH dehydrogenase subunit K
182	 36.65	0	180220..180822	-	200	33239634	ndhG	Pro0182	-	NADH dehydrogenase subunit J
183	 34.85	0	180819..181478	-	219	33239635	ndhI	Pro0183	-	NADH dehydrogenase subunit I
184	 36.54	0	181602..182756	-	384	33239636	ndhA	Pro0184	-	NADH dehydrogenase subunit H
185	 42.41	+1	182790..183968	-	392	33239637	gltA	Pro0185	-	methylcitrate synthase
186	 28.59	-2	184043..185644	-	533	33239638	-	Pro0186	-	hypothetical protein
187	 38.42	0	185719..186072	+	117	33239639	pspE	Pro0187	-	rhodanese-related sulfurtransferase
188	 43.25	+1	186094..187344	-	416	33239640	trpB	Pro0188	-	tryptophan synthase subunit beta
189	 38.89	0	187391..187714	+	107	33239641	SUI1	Pro0189	-	translation initiation factor SUI1
190	 36.14	0	187783..188388	+	201	33239642	cysC	Pro0190	-	adenylylsulfate kinase
191	 39.02	0	188395..188886	-	163	33239643	purE	Pro0191	-	phosphoribosylcarboxyaminoimidazole (NCAIR) mutase
192	 37.39	0	189010..190167	+	385	33239644	nagA	Pro0192	-	N-acetylglucosamine-6-phosphate deacetylase
193	 35.99	0	190196..190909	+	237	33239645	chlM	Pro0193	-	Mg-protoporphyrin IX methyl transferase
194	 38.55	0	190935..191663	-	242	33239646	-	Pro0194	-	two-component response regulator
195	 35.76	0	191750..192901	+	383	33239647	nifS	Pro0195	-	cysteine desulfurase
196	 36.71	0	192903..193820	-	305	33239648	-	Pro0196	-	S-adenosylmethionine-dependent methyltransferase
197	 39.58	0	193865..195049	+	394	33239649	ndhH	Pro0197	-	NAD(P)H-quinone oxidoreductase subunit H
198	 37.82	0	195055..195522	+	155	33239650	fcbC	Pro0198	-	thioesterase
199	 37.90	0	195496..196743	-	415	33239651	menE	Pro0199	-	putative O-succinylbenzoic acid--CoA ligase (OSB-CoA synthetase)
200	 38.58	0	196740..197711	-	323	33239652	menC	Pro0200	-	O-succinylbenzoate-CoA synthase
201	 40.06	0	197720..198685	-	321	33239653	menA	Pro0201	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
202	 40.08	0	198765..200186	+	473	33239654	menF	Pro0202	-	isochorismate synthase
203	 40.02	0	200150..201076	-	308	33239655	rimK	Pro0203	-	glutathione synthetase
204	 35.98	0	201082..201345	-	87	33239656	grxC	Pro0204	-	glutaredoxin
205	 39.31	0	201482..202552	+	356	33239657	prfB	Pro0205	-	peptide chain release factor 2
206	 35.42	0	202558..202749	+	63	33239658	-	Pro0206	-	hypothetical protein
207	 34.69	0	202749..203336	+	195	33239659	-	Pro0207	-	metal-dependent hydrolase
208	 35.71	0	203336..203797	+	153	33239660	dgkA	Pro0208	-	diacylglycerol kinase
209	 40.46	0	203810..204412	+	200	33239661	pabA	Pro0209	-	anthranilate/para-aminobenzoate synthase component II
210	 38.08	0	204427..205164	+	245	33239662	-	Pro0210	-	hypothetical protein
211	 36.42	0	205148..206281	-	377	33239663	hisC	Pro0211	-	histidinol-phosphate aminotransferase
212	 37.09	0	206281..208092	-	603	33239664	argS	Pro0212	-	arginyl-tRNA synthetase
213	 39.35	0	208099..208962	-	287	33239665	nadC	Pro0213	-	nicotinate-nucleotide pyrophosphorylase:quinolinate phosphoriobsyl transferase
214	 37.28	0	209078..210445	-	455	33239666	trmE	Pro0214	-	tRNA modification GTPase TrmE
215	 35.73	0	210522..210980	+	152	33239667	-	Pro0215	-	hypothetical protein
216	 37.66	0	211027..212529	-	500	33239668	-	Pro0216	-	hypothetical protein
217	 39.43	0	212585..214915	-	776	33239669	spoT	Pro0217	-	guanosine-3',5'-bis(diphosphate) 3'-diphosphatase, (ppGpp)ase
218	 38.63	0	214959..216581	+	540	33239670	-	Pro0218	-	ATPase components of various ABC-type transport systems
219	 39.71	0	216593..217549	-	318	33239671	rluA	Pro0219	-	putative pseudouridylate synthase specific to ribosomal large subunit
37.01	MEAN

3.99	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.