IslandPathversion 1.0

IslandPath Analysis: Prochlorococcus marinus subsp. marinus str. CCMP1375



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.01 STD DEV: 3.99
Prochlorococcus marinus subsp. marinus str. CCMP1375, complete genome - 1..1751080
1883 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1571	 33.71	0	1432160..1432426	+	88	33241022	-	Pro1573	-	hypothetical protein
1572	 37.18	0	1432575..1433198	-	207	33241023	crp	Pro1574	-	cAMP-binding domain-containing protein
1573	 43.74	+1	1433553..1434542	+	329	33241024	pstS	Pro1575	-	ABC-type phosphate transport system periplasmic component
1574	 38.22	0	1434616..1435884	-	422	33241025	proP	Pro1576	-	major facilitator superfamily permease
1575	 39.28	0	1435895..1436920	-	341	33241026	gap3	Pro1577	-	glyceraldehyde-3-phosphate dehydrogenase
1576	 39.42	0	1437040..1437351	+	103	33241027	arsR	Pro1578	-	transcriptional regulator
1577	 36.68	0	1437601..1438347	-	248	33241028	folE	Pro1579	-	GTP cyclohydrolase I
1578	 38.74	0	1438504..1438725	-	73	33241029	-	Pro1580	-	hypothetical protein
1579	 30.80	-1	1438918..1439391	+	157	33241030	-	Pro1581	-	hypothetical protein
1580	 34.07	0	1439395..1439667	-	90	33241031	-	Pro1582	-	hypothetical protein
1581	 38.40	0	1439968..1440342	-	124	33241032	-	Pro1583	-	hypothetical protein
1582	 38.16	0	1440339..1440566	-	75	33241033	rpoZ	Pro1584	-	DNA-directed RNA polymerase subunit omega
1583	 35.67	0	1440663..1442246	+	527	33241034	dnaK	Pro1585	-	molecular chaperone DnaK
1584	 41.21	+1	1442278..1442823	-	181	33241035	pyrR	Pro1586	-	pyrimidine regulatory protein PyrR
1585	 38.32	0	1442975..1444597	+	540	33241036	gpmI	Pro1587	-	phosphoglyceromutase
1586	 41.56	+1	1444609..1444839	+	76	33241037	secG	Pro1588	-	preprotein translocase subunit SecG
1587	 42.67	+1	1445403..1447040	-	545	33241038	groEL	Pro1589	-	chaperonin GroEL
1588	 45.51	+2	1447105..1447416	-	103	33241039	groES	Pro1590	-	co-chaperonin GroES
1589	 41.51	+1	1447640..1449106	+	488	33241040	atpD	Pro1591	-	F0F1 ATP synthase subunit beta
1590	 42.58	+1	1449179..1449589	+	136	33241041	atpC	Pro1592	-	F0F1 ATP synthase subunit epsilon
1591	 38.58	0	1449659..1450039	-	126	33241042	-	Pro1593	-	hypothetical protein
1592	 37.02	0	1450200..1450985	+	261	33241043	gph	Pro1594	-	HAD superfamily phosphatase
1593	 39.32	0	1450999..1452318	-	439	33241044	pepP	Pro1595	-	putative aminopeptidase P
1594	 38.10	0	1452421..1453407	+	328	33241045	tlyC	Pro1596	-	SBC domain-containing protein
1595	 39.61	0	1453404..1454726	+	440	33241046	-	Pro1597	-	membrane associated GTPase
1596	 38.10	0	1454723..1455310	+	195	33241047	nadD	Pro1598	-	nicotinic acid mononucleotide adenylyltransferase
1597	 38.58	0	1455310..1457004	+	564	33241048	nadE	Pro1599	-	NAD synthase
1598	 43.25	+1	1457063..1458202	+	379	33241049	ald	Pro1600	-	alanine dehydrogenase
1599	 40.96	0	1458214..1459314	-	366	33241050	-	Pro1601	-	hypothetical protein
1600	 35.90	0	1459319..1459513	-	64	33241051	-	Pro1602	-	hypothetical protein
1601	 39.85	0	1459545..1460495	-	316	33241052	atpG	Pro1603	-	F0F1 ATP synthase subunit gamma
1602	 41.57	+1	1460526..1462043	-	505	33241053	atpA	Pro1604	-	F0F1 ATP synthase subunit alpha
1603	 41.67	+1	1462111..1462662	-	183	33241054	atpH	Pro1605	-	F0F1 ATP synthase subunit delta
1604	 38.76	0	1462659..1463174	-	171	33241055	atpF	Pro1606	-	F0F1 ATP synthase subunit B
1605	 42.21	+1	1463171..1463632	-	153	33241056	atpF	Pro1607	-	F0F1 ATP synthase subunit B'
1606	 51.41	+2	1463765..1464013	-	82	33241057	atpE	Pro1608	-	F0F1 ATP synthase subunit C
1607	 41.74	+1	1464186..1464911	-	241	33241058	atpB	Pro1609	-	F0F1 ATP synthase subunit A
1608	 39.38	0	1464995..1465474	-	159	33241059	-	Pro1610	-	hypothetical protein
1609	 37.37	0	1465888..1467126	+	412	33241060	ftsW	Pro1611	-	cell division protein FtsW
1610	 41.44	+1	1467225..1467878	+	217	33241061	ccdA	Pro1612	-	putative c-type cytochrome biogenesis protein CcdA
1611	 32.64	-1	1467883..1469172	+	429	33241062	resB	Pro1613	-	putative c-type cytochrome biogenesis protein Ccs1
1612	 35.05	0	1469169..1469576	-	135	33241063	-	Pro1614	-	GTP cyclohydrolase I family protein
1613	 40.79	0	1469770..1469997	+	75	33241064	-	Pro1615	-	hypothetical protein
1614	 38.35	0	1470040..1470378	+	112	33241065	glnK	Pro1616	-	nitrogen regulatory protein P-II
1615	 38.99	0	1470367..1471179	-	270	33241066	-	Pro1617	-	rRNA methylase
1616	 40.85	0	1471233..1471538	+	101	33241067	-	Pro1618	-	hypothetical protein
1617	 39.35	0	1471589..1472884	+	431	33241068	purB	Pro1619	-	adenylosuccinate lyase
1618	 39.34	0	1472949..1474346	+	465	33241069	fumC	Pro1620	-	fumarate hydratase
1619	 39.63	0	1474361..1477138	-	925	33241070	-	Pro1621	-	superfamily II RNA helicase
1620	 39.53	0	1477252..1478397	+	381	33241071	cioF	Pro1622	-	putative 8-amino-7-oxononanoate synthase
1621	 35.29	0	1478394..1479107	+	237	33241072	-	Pro1623	-	Alpha/beta hydrolase family protein
1622	 38.23	0	1479107..1479862	+	251	33241073	-	Pro1624	-	SAM dependent methyltransferase
1623	 39.55	0	1479859..1480518	+	219	33241074	cioD	Pro1625	-	dethiobiotin synthetase
1624	 41.38	+1	1480761..1482065	+	434	33241075	cioA	Pro1626	-	adenosylmethionine-8-amino-7-oxononanoate aminotransferase
1625	 43.45	+1	1482070..1482336	-	88	33241076	-	Pro1627	-	hypothetical protein
1626	 37.20	0	1482278..1482820	-	180	33241077	cbpA	Pro1628	-	DnaJ-class molecular chaperone
1627	 36.61	0	1482894..1483655	+	253	33241078	gidB	Pro1629	-	phosphoribulokinase
1628	 38.40	0	1483634..1484857	-	407	33241079	-	Pro1630	-	aldo/keto reductase family protein
1629	 42.78	+1	1484873..1485232	-	119	33241080	fer	Pro1631	-	ferredoxin
1630	 39.44	0	1485245..1485637	-	130	33241081	-	Pro1632	-	hypothetical protein
1631	 41.43	+1	1485637..1485846	-	69	33241082	-	Pro1633	-	hypothetical protein
1632	 39.88	0	1485933..1486742	-	269	33241083	-	Pro1634	-	HEAT repeat-containing protein
1633	 40.14	0	1486955..1488718	-	587	33241084	putP	Pro1635	-	Na+/proline symporter
1634	 37.34	0	1488769..1489815	-	348	33241085	-	Pro1636	-	putative Fe-S-cluster redox protein
1635	 37.25	0	1489827..1489979	-	50	33241086	hli2	Pro1637	-	putative high light inducible protein
1636	 41.06	+1	1490023..1494126	-	1367	33241087	rpoC	Pro1638	-	DNA-directed RNA polymerase subunit beta'
1637	 38.69	0	1494174..1496078	-	634	33241088	rpoC	Pro1639	-	DNA-directed RNA polymerase subunit gamma
1638	 39.29	0	1496129..1499419	-	1096	33241089	rpoB	Pro1640	-	DNA-directed RNA polymerase subunit beta
1639	 39.54	0	1499696..1500484	-	262	33241090	tatD	Pro1641	-	putative deoxyribonuclease, TatD family
1640	 39.00	0	1500568..1500867	-	99	33241091	rpsT	Pro1642	-	30S ribosomal protein S20
1641	 38.62	0	1501001..1502323	+	440	33241092	hisD	Pro1643	-	histidinol dehydrogenase
1642	 39.50	0	1502301..1503014	-	237	33241093	rpi	Pro1644	-	ribose 5-phosphate isomerase
1643	 39.16	0	1503055..1504170	-	371	33241094	degQ	Pro1645	-	trypsin-like serine protease
1644	 33.33	0	1504390..1504857	+	155	33241095	-	Pro1646	-	hypothetical protein
1645	 41.30	+1	1504905..1506323	+	472	33241096	nusA	Pro1647	-	transcription elongation factor NusA
1646	 40.86	0	1506320..1506598	+	92	33241097	-	Pro1648	-	nucleic-acid-binding protein implicated in transcription termination
1647	 42.58	+1	1506662..1510066	+	1134	33241098	infB	Pro1649	-	translation initiation factor IF-2
1648	 36.71	0	1510153..1510389	-	78	33241099	-	Pro1650	-	hypothetical protein
1649	 35.00	0	1511302..1511661	-	119	33241100	-	Pro1651	-	hypothetical protein
1650	 37.76	0	1511883..1513508	+	541	33241101	-	Pro1652	-	Fe-S oxidoreductase
1651	 37.92	0	1513430..1514344	-	304	33241102	-	Pro1653	-	metal-dependent membrane protease
1652	 44.55	+1	1514341..1514652	-	103	33241103	clpS	Pro1654	-	ATP-dependent Clp protease adaptor protein ClpS
1653	 40.59	0	1514714..1515940	-	408	33241104	-	Pro1655	-	L,L-diaminopimelate aminotransferase
1654	 38.10	0	1516036..1518720	+	894	33241105	-	Pro1656	-	SAM radical enzyme
1655	 34.53	0	1518963..1520798	+	611	33241106	cafA	Pro1657	-	ribonuclease G/E
1656	 38.54	0	1520802..1521377	+	191	33241107	rnhB	Pro1658	-	ribonuclease HII
1657	 38.18	0	1521397..1521933	-	178	33241108	-	Pro1659	-	hypothetical protein
1658	 37.37	0	1521967..1522809	+	280	33241109	pheA	Pro1660	-	chorismate mutase-prephenate dehydratase
1659	 33.76	0	1522811..1523740	-	309	33241110	-	Pro1661	-	ubiE/COQ5 family methyltransferase
1660	 39.82	0	1523740..1524402	-	220	33241111	-	Pro1662	-	ATP-dependent protease La (LON) domain
1661	 40.81	0	1524466..1524786	-	106	33241112	rpsJ	Pro1663	-	30S ribosomal protein S10
1662	 43.33	+1	1524921..1526120	-	399	33241113	tuf	Pro1664	-	elongation factor Tu
1663	 40.94	0	1526167..1528242	-	691	33241114	fusA	Pro1665	-	elongation factor G
1664	 42.68	+1	1528335..1528805	-	156	33241115	rpsG	Pro1666	-	30S ribosomal protein S7
1665	 46.93	+2	1528848..1529222	-	124	33241116	rpsL	Pro1667	-	30S ribosomal protein S12
1666	 38.14	0	1529478..1534052	+	1524	33241117	glsF	Pro1668	-	ferredoxin-dependent glutamate synthase
1667	 32.73	-1	1534067..1534399	+	110	33241118	-	Pro1669	-	hypothetical protein
1668	 37.74	0	1534377..1535261	-	294	33241119	lipA	Pro1670	-	lipoyl synthase
1669	 39.68	0	1535300..1537063	-	587	33241120	cobJ	Pro1671	-	precorrin-3B methylase
1670	 44.70	+1	1537494..1539815	+	773	33241121	psaA	Pro1672	-	photosystem I P700 chlorophyll a apoprotein A1
37.01	MEAN

3.99	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.