IslandPath Analysis: Prochlorococcus marinus subsp. marinus str. CCMP1375



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.01   STD DEV: 3.99
Prochlorococcus marinus subsp. marinus str. CCMP1375, complete genome - 1..1751080
1883 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1485	 37.06	0	1369651..1370079	-	142	33240936	-	Pro1487	-	hypothetical protein
1486	 37.75	0	1370461..1370958	+	165	33240937	-	Pro1488	-	hypothetical protein
1487	 34.91	0	1370977..1371420	+	147	33240938	-	Pro1489	-	pyrimidine dimer DNA glycosylase/endonuclease V
1488	 34.03	0	1371586..1371729	-	47	33240939	-	Pro1490	-	hypothetical protein
1489	 40.43	0	1371971..1372252	-	93	33240940	-	Pro1491	-	hypothetical protein
1490	 36.72	0	1372352..1372528	-	58	33240941	-	Pro1492	-	hypothetical protein
1491	 34.48	0	1373189..1373797	+	202	33240942	-	Pro1493	-	hypothetical protein
1492	 35.74	0	1373904..1374194	-	96	33240943	-	Pro1494	-	cytochrome b559 subunit beta
1493	 39.58	0	1374888..1375127	+	79	33240944	-	Pro1495	-	hypothetical protein
1494	 43.97	+1	1375179..1375460	-	93	33240945	-	Pro1496	-	hypothetical protein
1495	 40.80	0	1375405..1375578	+	57	33240946	-	Pro1497	-	hypothetical protein
1496	 40.00	0	1375611..1375865	+	84	33240947	-	Pro1498	-	hypothetical protein
1497	 34.47	0	1376001..1376264	-	87	33240948	-	Pro1499	-	hypothetical protein
1498	 41.53	+1	1376732..1376914	-	60	33240949	-	Pro1500	-	hypothetical protein
1499	 37.75	0	1377714..1378505	-	263	33240950	znuB	Pro1501	-	manganese ABC transporter
1500	 38.73	0	1378553..1378960	+	135	33240951	fur	Pro1502	-	ferric uptake regulator family
1501	 38.46	0	1378977..1379678	-	233	33240952	znuC	Pro1503	-	ABC transporter ATP-binding protein
1502	 37.66	0	1379762..1381264	+	500	33240953	lraI	Pro1504	-	ABC-type metal ion transport system periplasmic component
1503	 30.97	-1	1381308..1381646	+	112	33240954	-	Pro1505	-	hypothetical protein
1504	 43.96	+1	1381643..1383025	+	460	33240955	-	Pro1506	-	G3E family GTPase
1505	 45.62	+2	1383013..1384086	+	357	33240956	-	Pro1507	-	WD-40 repeat-containing protein
1506	 31.13	-1	1384141..1385229	+	362	33240957	-	Pro1508	-	G3E family GTPase
1507	 36.36	0	1385685..1385849	+	54	33240958	-	Pro1509	-	hypothetical protein
1508	 32.69	-1	1385984..1386139	-	51	33240959	-	Pro1510	-	hypothetical protein
1509	 42.44	+1	1386430..1386912	-	160	33240960	-	Pro1511	-	hypothetical protein
1510	 42.50	+1	1387252..1387371	+	39	33240961	hli13	Pro1512	-	high light inducible protein hli13
1511	 39.58	0	1387371..1387514	+	47	33240962	hli10	Pro1513	-	high light inducible protein hli10
1512	 43.52	+1	1387548..1387655	+	35	33240963	hli11	Pro1514	-	high light inducible protein hli11
1513	 37.93	0	1387748..1387921	+	57	33240964	-	Pro1515	-	hypothetical protein
1514	 36.67	0	1388012..1388131	+	39	33240965	hli1	Pro1516	-	high light inducible protein hli1
1515	 41.81	+1	1388593..1388769	+	58	33240966	-	Pro1517	-	hypothetical protein
1516	 37.21	0	1388887..1389015	+	42	33240967	-	Pro1518	-	hypothetical protein
1517	 40.21	0	1389227..1389415	+	62	33240968	-	Pro1519	-	hypothetical protein
1518	 32.03	-1	1389491..1389721	-	76	33240969	-	Pro1520	-	hypothetical protein
1519	 48.21	+2	1390206..1391906	+	566	33240970	-	Pro1521	-	hypothetical protein
1520	 42.20	+1	1391956..1393737	+	593	33240971	ggt	Pro1522	-	gamma-glutamyltransferase
1521	 38.38	0	1393972..1394328	+	118	33240972	-	Pro1523	-	hypothetical protein
1522	 36.61	0	1394488..1395066	+	192	33240973	-	Pro1524	-	hypothetical protein
1523	 42.81	+1	1395300..1395974	+	224	33240974	-	Pro1525	-	hypothetical protein
1524	 35.03	0	1396058..1396234	+	58	33240975	-	Pro1526	-	hypothetical protein
1525	 36.07	0	1396295..1397062	-	255	33240976	kch	Pro1527	-	Kef-type K+ transporter NAD-binding component
1526	 43.52	+1	1397333..1397440	+	35	33240977	hli12	Pro1528	-	high light inducible protein hli12
1527	 30.53	-1	1397728..1398618	-	296	33240978	-	Pro1529	-	salt-induced outer membrane prototein
1528	 39.25	0	1398615..1398800	-	61	33240979	-	Pro1530	-	hypothetical protein
1529	 36.11	0	1398832..1399155	+	107	33240980	-	Pro1531	-	hypothetical protein
1530	 34.94	0	1399728..1400039	+	103	33240981	-	Pro1532	-	hypothetical protein
1531	 44.21	+1	1400147..1401139	+	330	33240982	pstS	Pro1533	-	ABC-type phosphate transport system periplasmic component
1532	 33.33	0	1401141..1401356	-	71	33240983	-	Pro1534	-	hypothetical protein
1533	 37.12	0	1401550..1401681	-	43	33240984	-	Pro1535	-	hypothetical protein
1534	 29.69	-1	1402126..1404240	-	704	33240985	-	Pro1536	-	membrane associated acyltransferase
1535	 40.19	0	1404505..1405452	-	315	33240986	por	Pro1537	-	light dependent protochlorophyllide oxido-reductase
1536	 41.29	+1	1405931..1407325	+	464	33240987	alsT	Pro1538	-	Na+/alanine symporter
1537	 41.28	+1	1407516..1408799	-	427	33240988	murA	Pro1539	-	UDP-N-acetylglucosamine enolpyruvyl transferase
1538	 35.96	0	1408874..1409140	-	88	33240989	-	Pro1540	-	hypothetical protein
1539	 41.03	+1	1409143..1409571	-	142	33240990	-	Pro1541	-	hypothetical protein
1540	 38.78	0	1409678..1410265	+	195	33240991	-	Pro1542	-	two-component response regulator
1541	 39.18	0	1410262..1411767	+	501	33240992	-	Pro1543	-	membrane associated sensory histidine kinase
1542	 42.59	+1	1411813..1412082	+	89	33240993	-	Pro1544	-	hypothetical protein
1543	 36.65	0	1412082..1413227	+	381	33240994	-	Pro1545	-	Zn-dependent protease
1544	 39.93	0	1413396..1413668	-	90	33240995	-	Pro1546	-	hypothetical protein
1545	 35.44	0	1414453..1414689	-	78	33240996	-	Pro1547	-	hypothetical protein
1546	 36.39	0	1414690..1415310	-	206	33240997	-	Pro1548	-	hypothetical protein
1547	 36.84	0	1415923..1416150	+	75	33240998	-	Pro1549	-	hypothetical protein
1548	 36.23	0	1416262..1416468	+	68	33240999	-	Pro1550	-	hypothetical protein
1549	 36.97	0	1416584..1416748	+	54	33241000	-	Pro1551	-	hypothetical protein
1550	 40.13	0	1416782..1417693	-	303	33241001	-	Pro1552	-	redox protein
1551	 35.15	0	1417723..1417887	-	54	33241002	-	Pro1553	-	hypothetical protein
1552	 39.12	0	1418096..1418389	+	97	33241003	-	Pro1554	-	hypothetical protein
1553	 37.71	0	1419086..1419382	-	98	33241004	clpS	Pro1555	-	ATP-dependent Clp protease adaptor
1554	 37.44	0	1419437..1419631	-	64	33241005	-	Pro1556	-	hypothetical protein
1555	 38.18	0	1419823..1419987	+	54	33241006	-	Pro1557	-	hypothetical protein
1556	 40.94	0	1420049..1420324	+	91	33241007	-	Pro1558	-	hypothetical protein
1557	 42.71	+1	1420774..1420965	+	63	33241008	-	Pro1559	-	hypothetical protein
1558	 44.27	+1	1421155..1421547	+	130	33241009	-	Pro1560	-	hypothetical protein
1559	 37.40	0	1422025..1422663	+	212	33241010	-	Pro1561	-	hypothetical protein
1560	 41.00	0	1423583..1424221	-	212	33241011	-	Pro1562	-	hypothetical protein
1561	 37.97	0	1424836..1425504	+	222	33241012	-	Pro1563	-	adhesin-like protein
1562	 30.30	-1	1425898..1426029	-	43	33241013	-	Pro1564	-	hypothetical protein
1563	 34.34	0	1426106..1426303	-	65	33241014	-	Pro1565	-	hypothetical protein
1564	 33.33	0	1426348..1426440	-	30	33241015	hli3	Pro1566	-	high light inducible protein hli3
1565	 41.09	+1	1427121..1427906	+	261	33241016	-	Pro1567	-	ATPase
1566	 42.52	+1	1427912..1428727	+	271	33241017	-	Pro1568	-	calcineurin family phosphoesterase
1567	 43.42	+1	1428724..1429437	+	237	33241018	-	Pro1569	-	calcineurin family phosphoesterase
1568	 41.33	+1	1429681..1430868	+	395	33241019	ampC	Pro1570	-	Beta-lactamase class C and other penicillin binding proteins
1569	 37.83	0	1431094..1431471	+	125	33241020	-	Pro1571	-	hypothetical protein
1570	 34.36	0	1431811..1432005	-	64	33241021	-	Pro1572	-	hypothetical protein
1571	 33.71	0	1432160..1432426	+	88	33241022	-	Pro1573	-	hypothetical protein
1572	 37.18	0	1432575..1433198	-	207	33241023	crp	Pro1574	-	cAMP-binding domain-containing protein
1573	 43.74	+1	1433553..1434542	+	329	33241024	pstS	Pro1575	-	ABC-type phosphate transport system periplasmic component
1574	 38.22	0	1434616..1435884	-	422	33241025	proP	Pro1576	-	major facilitator superfamily permease
1575	 39.28	0	1435895..1436920	-	341	33241026	gap3	Pro1577	-	glyceraldehyde-3-phosphate dehydrogenase
1576	 39.42	0	1437040..1437351	+	103	33241027	arsR	Pro1578	-	transcriptional regulator
1577	 36.68	0	1437601..1438347	-	248	33241028	folE	Pro1579	-	GTP cyclohydrolase I
1578	 38.74	0	1438504..1438725	-	73	33241029	-	Pro1580	-	hypothetical protein
1579	 30.80	-1	1438918..1439391	+	157	33241030	-	Pro1581	-	hypothetical protein
1580	 34.07	0	1439395..1439667	-	90	33241031	-	Pro1582	-	hypothetical protein
1581	 38.40	0	1439968..1440342	-	124	33241032	-	Pro1583	-	hypothetical protein
1582	 38.16	0	1440339..1440566	-	75	33241033	rpoZ	Pro1584	-	DNA-directed RNA polymerase subunit omega
1583	 35.67	0	1440663..1442246	+	527	33241034	dnaK	Pro1585	-	molecular chaperone DnaK
1584	 41.21	+1	1442278..1442823	-	181	33241035	pyrR	Pro1586	-	pyrimidine regulatory protein PyrR
37.01	MEAN

3.99	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.