IslandPath Analysis: Prochlorococcus marinus subsp. marinus str. CCMP1375



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.01   STD DEV: 3.99
Prochlorococcus marinus subsp. marinus str. CCMP1375, complete genome - 1..1751080
1883 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1445	 33.64	0	1342211..1342858	-	215	33240896	smtA	Pro1447	-	SAM-dependent methyltransferase
1446	 29.19	-1	1342960..1343442	-	160	33240897	-	Pro1448	-	hypothetical protein
1447	 41.10	+1	1343929..1344147	-	72	33240898	-	Pro1449	-	hypothetical protein
1448	 43.00	+1	1344165..1345250	-	361	33240899	pcbE	Pro1450	-	chlorophyll a/b binding light harvesting protein PcbE
1449	 38.00	0	1345466..1346194	-	242	33240900	guaA	Pro1451	-	GMP synthase glutamine amidotransferase subunit
1450	 40.69	0	1346303..1347634	-	443	33240901	-	Pro1452	-	SNF family Na(+)-dependent transporter
1451	 33.68	0	1347811..1348098	-	95	33240902	-	Pro1453	-	hypothetical protein
1452	 42.53	+1	1348751..1348924	-	57	33240903	-	Pro1454	-	hypothetical protein
1453	 35.86	0	1349413..1349610	+	65	33240904	-	Pro1455	-	hypothetical protein
1454	 33.75	0	1349704..1350894	+	396	33240905	wecE	Pro1456	-	DegT/DnrJ/EryC1/StrS aminotransferase family protein
1455	 36.59	0	1351142..1351417	+	91	33240906	-	Pro1457	-	hypothetical protein
1456	 43.72	+1	1351770..1351952	+	60	33240907	-	Pro1458	-	hypothetical protein
1457	 41.74	+1	1352512..1352868	-	118	33240908	-	Pro1459	-	transciptional regulator
1458	 31.54	-1	1353842..1354342	-	166	33240909	-	Pro1460	-	hypothetical protein
1459	 40.52	0	1355770..1355922	-	50	33240910	-	Pro1461	-	hypothetical protein
1460	 40.42	0	1356227..1357129	+	300	33240911	gloB	Pro1462	-	metallo-beta-lactamase superfamily hydrolase
1461	 37.86	0	1357134..1357751	+	205	33240912	-	Pro1463	-	SAM-dependent methyltransferase
1462	 36.00	0	1357861..1358010	+	49	33240913	-	Pro1464	-	hypothetical protein
1463	 37.53	0	1358173..1358577	-	134	33240914	-	Pro1465	-	hypothetical protein
1464	 37.82	0	1359048..1359560	-	170	33240915	-	Pro1466	-	hypothetical protein
1465	 34.75	0	1360473..1360754	+	93	33240916	-	Pro1467	-	hypothetical protein
1466	 34.17	0	1360831..1361190	-	119	33240917	-	Pro1468	-	hypothetical protein
1467	 25.49	-2	1361334..1361486	+	50	33240918	-	Pro1469	-	hypothetical protein
1468	 35.15	0	1361592..1361756	+	54	33240919	-	Pro1470	-	hypothetical protein
1469	 37.19	0	1362033..1362758	+	241	33240920	-	Pro1471	-	hypothetical protein
1470	 34.41	0	1362868..1363053	-	61	33240921	-	Pro1472	-	hypothetical protein
1471	 33.01	-1	1363484..1363789	+	101	33240922	-	Pro1473	-	hypothetical protein
1472	 36.26	0	1363871..1364041	+	56	33240923	-	Pro1474	-	hypothetical protein
1473	 34.50	0	1364098..1364268	+	56	33240924	-	Pro1475	-	hypothetical protein
1474	 35.00	0	1364365..1364904	+	179	33240925	-	Pro1476	-	hypothetical protein
1475	 33.04	0	1364916..1365590	-	224	33240926	rhaT	Pro1477	-	DMT family permease
1476	 41.52	+1	1365865..1366206	-	113	33240927	-	Pro1478	-	hypothetical protein
1477	 38.81	0	1366361..1366561	-	66	33240928	-	Pro1479	-	hypothetical protein
1478	 41.38	+1	1366724..1367245	-	173	33240929	abrB	Pro1480	-	hypothetical protein
1479	 36.84	0	1367464..1367691	+	75	33240930	-	Pro1481	-	hypothetical protein
1480	 38.79	0	1368037..1368201	-	54	33240931	-	Pro1482	-	hypothetical protein
1481	 32.82	-1	1368430..1368624	-	64	33240932	-	Pro1483	-	hypothetical protein
1482	 34.44	0	1368694..1368873	-	59	33240933	-	Pro1484	-	hypothetical protein
1483	 45.24	+2	1369029..1369196	+	55	33240934	-	Pro1485	-	hypothetical protein
1484	 28.30	-2	1369386..1369544	+	52	33240935	-	Pro1486	-	hypothetical protein
1485	 37.06	0	1369651..1370079	-	142	33240936	-	Pro1487	-	hypothetical protein
1486	 37.75	0	1370461..1370958	+	165	33240937	-	Pro1488	-	hypothetical protein
1487	 34.91	0	1370977..1371420	+	147	33240938	-	Pro1489	-	pyrimidine dimer DNA glycosylase/endonuclease V
1488	 34.03	0	1371586..1371729	-	47	33240939	-	Pro1490	-	hypothetical protein
1489	 40.43	0	1371971..1372252	-	93	33240940	-	Pro1491	-	hypothetical protein
1490	 36.72	0	1372352..1372528	-	58	33240941	-	Pro1492	-	hypothetical protein
1491	 34.48	0	1373189..1373797	+	202	33240942	-	Pro1493	-	hypothetical protein
1492	 35.74	0	1373904..1374194	-	96	33240943	-	Pro1494	-	cytochrome b559 subunit beta
1493	 39.58	0	1374888..1375127	+	79	33240944	-	Pro1495	-	hypothetical protein
1494	 43.97	+1	1375179..1375460	-	93	33240945	-	Pro1496	-	hypothetical protein
1495	 40.80	0	1375405..1375578	+	57	33240946	-	Pro1497	-	hypothetical protein
1496	 40.00	0	1375611..1375865	+	84	33240947	-	Pro1498	-	hypothetical protein
1497	 34.47	0	1376001..1376264	-	87	33240948	-	Pro1499	-	hypothetical protein
1498	 41.53	+1	1376732..1376914	-	60	33240949	-	Pro1500	-	hypothetical protein
1499	 37.75	0	1377714..1378505	-	263	33240950	znuB	Pro1501	-	manganese ABC transporter
1500	 38.73	0	1378553..1378960	+	135	33240951	fur	Pro1502	-	ferric uptake regulator family
1501	 38.46	0	1378977..1379678	-	233	33240952	znuC	Pro1503	-	ABC transporter ATP-binding protein
1502	 37.66	0	1379762..1381264	+	500	33240953	lraI	Pro1504	-	ABC-type metal ion transport system periplasmic component
1503	 30.97	-1	1381308..1381646	+	112	33240954	-	Pro1505	-	hypothetical protein
1504	 43.96	+1	1381643..1383025	+	460	33240955	-	Pro1506	-	G3E family GTPase
1505	 45.62	+2	1383013..1384086	+	357	33240956	-	Pro1507	-	WD-40 repeat-containing protein
1506	 31.13	-1	1384141..1385229	+	362	33240957	-	Pro1508	-	G3E family GTPase
1507	 36.36	0	1385685..1385849	+	54	33240958	-	Pro1509	-	hypothetical protein
1508	 32.69	-1	1385984..1386139	-	51	33240959	-	Pro1510	-	hypothetical protein
1509	 42.44	+1	1386430..1386912	-	160	33240960	-	Pro1511	-	hypothetical protein
1510	 42.50	+1	1387252..1387371	+	39	33240961	hli13	Pro1512	-	high light inducible protein hli13
1511	 39.58	0	1387371..1387514	+	47	33240962	hli10	Pro1513	-	high light inducible protein hli10
1512	 43.52	+1	1387548..1387655	+	35	33240963	hli11	Pro1514	-	high light inducible protein hli11
1513	 37.93	0	1387748..1387921	+	57	33240964	-	Pro1515	-	hypothetical protein
1514	 36.67	0	1388012..1388131	+	39	33240965	hli1	Pro1516	-	high light inducible protein hli1
1515	 41.81	+1	1388593..1388769	+	58	33240966	-	Pro1517	-	hypothetical protein
1516	 37.21	0	1388887..1389015	+	42	33240967	-	Pro1518	-	hypothetical protein
1517	 40.21	0	1389227..1389415	+	62	33240968	-	Pro1519	-	hypothetical protein
1518	 32.03	-1	1389491..1389721	-	76	33240969	-	Pro1520	-	hypothetical protein
1519	 48.21	+2	1390206..1391906	+	566	33240970	-	Pro1521	-	hypothetical protein
1520	 42.20	+1	1391956..1393737	+	593	33240971	ggt	Pro1522	-	gamma-glutamyltransferase
1521	 38.38	0	1393972..1394328	+	118	33240972	-	Pro1523	-	hypothetical protein
1522	 36.61	0	1394488..1395066	+	192	33240973	-	Pro1524	-	hypothetical protein
1523	 42.81	+1	1395300..1395974	+	224	33240974	-	Pro1525	-	hypothetical protein
1524	 35.03	0	1396058..1396234	+	58	33240975	-	Pro1526	-	hypothetical protein
1525	 36.07	0	1396295..1397062	-	255	33240976	kch	Pro1527	-	Kef-type K+ transporter NAD-binding component
1526	 43.52	+1	1397333..1397440	+	35	33240977	hli12	Pro1528	-	high light inducible protein hli12
1527	 30.53	-1	1397728..1398618	-	296	33240978	-	Pro1529	-	salt-induced outer membrane prototein
1528	 39.25	0	1398615..1398800	-	61	33240979	-	Pro1530	-	hypothetical protein
1529	 36.11	0	1398832..1399155	+	107	33240980	-	Pro1531	-	hypothetical protein
1530	 34.94	0	1399728..1400039	+	103	33240981	-	Pro1532	-	hypothetical protein
1531	 44.21	+1	1400147..1401139	+	330	33240982	pstS	Pro1533	-	ABC-type phosphate transport system periplasmic component
1532	 33.33	0	1401141..1401356	-	71	33240983	-	Pro1534	-	hypothetical protein
1533	 37.12	0	1401550..1401681	-	43	33240984	-	Pro1535	-	hypothetical protein
1534	 29.69	-1	1402126..1404240	-	704	33240985	-	Pro1536	-	membrane associated acyltransferase
1535	 40.19	0	1404505..1405452	-	315	33240986	por	Pro1537	-	light dependent protochlorophyllide oxido-reductase
1536	 41.29	+1	1405931..1407325	+	464	33240987	alsT	Pro1538	-	Na+/alanine symporter
1537	 41.28	+1	1407516..1408799	-	427	33240988	murA	Pro1539	-	UDP-N-acetylglucosamine enolpyruvyl transferase
1538	 35.96	0	1408874..1409140	-	88	33240989	-	Pro1540	-	hypothetical protein
1539	 41.03	+1	1409143..1409571	-	142	33240990	-	Pro1541	-	hypothetical protein
1540	 38.78	0	1409678..1410265	+	195	33240991	-	Pro1542	-	two-component response regulator
1541	 39.18	0	1410262..1411767	+	501	33240992	-	Pro1543	-	membrane associated sensory histidine kinase
1542	 42.59	+1	1411813..1412082	+	89	33240993	-	Pro1544	-	hypothetical protein
1543	 36.65	0	1412082..1413227	+	381	33240994	-	Pro1545	-	Zn-dependent protease
1544	 39.93	0	1413396..1413668	-	90	33240995	-	Pro1546	-	hypothetical protein
37.01	MEAN

3.99	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.