IslandPath Analysis: Prochlorococcus marinus subsp. marinus str. CCMP1375



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.01   STD DEV: 3.99
Prochlorococcus marinus subsp. marinus str. CCMP1375, complete genome - 1..1751080
1883 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1419	 38.42	0	1320693..1322030	+	445	33240870	purD	Pro1421	-	phosphoribosylamine--glycine ligase
1420	 35.46	0	1322037..1324109	+	690	33240871	-	Pro1422	-	two-component sensor histidine kinase
1421	 38.18	0	1324116..1325621	-	501	33240872	kaiC	Pro1423	-	circadian clock protein KaiC
1422	 39.55	0	1325722..1326075	-	117	33240873	kaiB	Pro1424	-	circadian clock protein KaiB
1423	 35.95	0	1326239..1326697	+	152	33240874	rplU	Pro1425	-	ribosomal protein L21
1424	 40.91	0	1326721..1326984	+	87	33240875	rpmA	Pro1426	-	50S ribosomal protein L27
1425	 33.47	0	1326981..1327739	-	252	33240876	-	Pro1427	-	SAM-dependent methyltransferase
1426	 36.41	0	1327826..1328767	+	313	33240877	truB	Pro1428	-	pseudouridine synthase
1427	 34.37	0	1328787..1330046	-	419	33240878	spoIID	Pro1429	-	SpoIID protein
1428	 39.88	0	1330159..1331121	+	320	33240879	elaC	Pro1430	-	metallo-beta-lactamase superfamily protein
1429	 38.92	0	1331190..1331744	+	184	33240880	-	Pro1431	-	pentapeptide repeat-containing protein
1430	 45.64	+2	1331835..1332029	-	64	33240881	-	Pro1432	-	hypothetical protein
1431	 42.21	+1	1332225..1332686	-	153	33240882	-	Pro1433	-	hypothetical protein
1432	 43.67	+1	1332720..1333019	-	99	33240883	fdx	Pro1434	-	ferredoxin
1433	 37.27	0	1333186..1334100	-	304	33240884	prmA	Pro1435	-	ribosomal protein L11 methylase
1434	 40.08	0	1334126..1335712	-	528	33240885	serA	Pro1436	-	putative D-3-phosphoglycerate dehydrogenase (PGDH)
1435	 37.23	0	1335813..1336376	+	187	33240886	-	Pro1437	-	hypothetical protein
1436	 35.87	0	1336373..1337161	+	262	33240887	-	Pro1438	-	RNA-binding protein
1437	 36.09	0	1337319..1338731	+	470	33240888	murD	Pro1439	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
1438	 33.97	0	1338872..1339186	+	104	33240889	-	Pro1440	-	hypothetical protein
1439	 33.63	0	1339217..1339555	-	112	33240890	-	Pro1441	-	hypothetical protein
1440	 37.16	0	1339696..1339878	+	60	33240891	-	Pro1442	-	hypothetical protein
1441	 39.88	0	1340096..1340263	+	55	33240892	-	Pro1443	-	hypothetical protein
1442	 38.79	0	1340376..1340540	-	54	33240893	-	Pro1444	-	hypothetical protein
1443	 32.76	-1	1340747..1341265	+	172	33240894	apt	Pro1445	-	adenine phosphoribosyltransferase
1444	 29.25	-1	1341579..1341872	+	97	33240895	-	Pro1446	-	hypothetical protein
1445	 33.64	0	1342211..1342858	-	215	33240896	smtA	Pro1447	-	SAM-dependent methyltransferase
1446	 29.19	-1	1342960..1343442	-	160	33240897	-	Pro1448	-	hypothetical protein
1447	 41.10	+1	1343929..1344147	-	72	33240898	-	Pro1449	-	hypothetical protein
1448	 43.00	+1	1344165..1345250	-	361	33240899	pcbE	Pro1450	-	chlorophyll a/b binding light harvesting protein PcbE
1449	 38.00	0	1345466..1346194	-	242	33240900	guaA	Pro1451	-	GMP synthase glutamine amidotransferase subunit
1450	 40.69	0	1346303..1347634	-	443	33240901	-	Pro1452	-	SNF family Na(+)-dependent transporter
1451	 33.68	0	1347811..1348098	-	95	33240902	-	Pro1453	-	hypothetical protein
1452	 42.53	+1	1348751..1348924	-	57	33240903	-	Pro1454	-	hypothetical protein
1453	 35.86	0	1349413..1349610	+	65	33240904	-	Pro1455	-	hypothetical protein
1454	 33.75	0	1349704..1350894	+	396	33240905	wecE	Pro1456	-	DegT/DnrJ/EryC1/StrS aminotransferase family protein
1455	 36.59	0	1351142..1351417	+	91	33240906	-	Pro1457	-	hypothetical protein
1456	 43.72	+1	1351770..1351952	+	60	33240907	-	Pro1458	-	hypothetical protein
1457	 41.74	+1	1352512..1352868	-	118	33240908	-	Pro1459	-	transciptional regulator
1458	 31.54	-1	1353842..1354342	-	166	33240909	-	Pro1460	-	hypothetical protein
1459	 40.52	0	1355770..1355922	-	50	33240910	-	Pro1461	-	hypothetical protein
1460	 40.42	0	1356227..1357129	+	300	33240911	gloB	Pro1462	-	metallo-beta-lactamase superfamily hydrolase
1461	 37.86	0	1357134..1357751	+	205	33240912	-	Pro1463	-	SAM-dependent methyltransferase
1462	 36.00	0	1357861..1358010	+	49	33240913	-	Pro1464	-	hypothetical protein
1463	 37.53	0	1358173..1358577	-	134	33240914	-	Pro1465	-	hypothetical protein
1464	 37.82	0	1359048..1359560	-	170	33240915	-	Pro1466	-	hypothetical protein
1465	 34.75	0	1360473..1360754	+	93	33240916	-	Pro1467	-	hypothetical protein
1466	 34.17	0	1360831..1361190	-	119	33240917	-	Pro1468	-	hypothetical protein
1467	 25.49	-2	1361334..1361486	+	50	33240918	-	Pro1469	-	hypothetical protein
1468	 35.15	0	1361592..1361756	+	54	33240919	-	Pro1470	-	hypothetical protein
1469	 37.19	0	1362033..1362758	+	241	33240920	-	Pro1471	-	hypothetical protein
1470	 34.41	0	1362868..1363053	-	61	33240921	-	Pro1472	-	hypothetical protein
1471	 33.01	-1	1363484..1363789	+	101	33240922	-	Pro1473	-	hypothetical protein
1472	 36.26	0	1363871..1364041	+	56	33240923	-	Pro1474	-	hypothetical protein
1473	 34.50	0	1364098..1364268	+	56	33240924	-	Pro1475	-	hypothetical protein
1474	 35.00	0	1364365..1364904	+	179	33240925	-	Pro1476	-	hypothetical protein
1475	 33.04	0	1364916..1365590	-	224	33240926	rhaT	Pro1477	-	DMT family permease
1476	 41.52	+1	1365865..1366206	-	113	33240927	-	Pro1478	-	hypothetical protein
1477	 38.81	0	1366361..1366561	-	66	33240928	-	Pro1479	-	hypothetical protein
1478	 41.38	+1	1366724..1367245	-	173	33240929	abrB	Pro1480	-	hypothetical protein
1479	 36.84	0	1367464..1367691	+	75	33240930	-	Pro1481	-	hypothetical protein
1480	 38.79	0	1368037..1368201	-	54	33240931	-	Pro1482	-	hypothetical protein
1481	 32.82	-1	1368430..1368624	-	64	33240932	-	Pro1483	-	hypothetical protein
1482	 34.44	0	1368694..1368873	-	59	33240933	-	Pro1484	-	hypothetical protein
1483	 45.24	+2	1369029..1369196	+	55	33240934	-	Pro1485	-	hypothetical protein
1484	 28.30	-2	1369386..1369544	+	52	33240935	-	Pro1486	-	hypothetical protein
1485	 37.06	0	1369651..1370079	-	142	33240936	-	Pro1487	-	hypothetical protein
1486	 37.75	0	1370461..1370958	+	165	33240937	-	Pro1488	-	hypothetical protein
1487	 34.91	0	1370977..1371420	+	147	33240938	-	Pro1489	-	pyrimidine dimer DNA glycosylase/endonuclease V
1488	 34.03	0	1371586..1371729	-	47	33240939	-	Pro1490	-	hypothetical protein
1489	 40.43	0	1371971..1372252	-	93	33240940	-	Pro1491	-	hypothetical protein
1490	 36.72	0	1372352..1372528	-	58	33240941	-	Pro1492	-	hypothetical protein
1491	 34.48	0	1373189..1373797	+	202	33240942	-	Pro1493	-	hypothetical protein
1492	 35.74	0	1373904..1374194	-	96	33240943	-	Pro1494	-	cytochrome b559 subunit beta
1493	 39.58	0	1374888..1375127	+	79	33240944	-	Pro1495	-	hypothetical protein
1494	 43.97	+1	1375179..1375460	-	93	33240945	-	Pro1496	-	hypothetical protein
1495	 40.80	0	1375405..1375578	+	57	33240946	-	Pro1497	-	hypothetical protein
1496	 40.00	0	1375611..1375865	+	84	33240947	-	Pro1498	-	hypothetical protein
1497	 34.47	0	1376001..1376264	-	87	33240948	-	Pro1499	-	hypothetical protein
1498	 41.53	+1	1376732..1376914	-	60	33240949	-	Pro1500	-	hypothetical protein
1499	 37.75	0	1377714..1378505	-	263	33240950	znuB	Pro1501	-	manganese ABC transporter
1500	 38.73	0	1378553..1378960	+	135	33240951	fur	Pro1502	-	ferric uptake regulator family
1501	 38.46	0	1378977..1379678	-	233	33240952	znuC	Pro1503	-	ABC transporter ATP-binding protein
1502	 37.66	0	1379762..1381264	+	500	33240953	lraI	Pro1504	-	ABC-type metal ion transport system periplasmic component
1503	 30.97	-1	1381308..1381646	+	112	33240954	-	Pro1505	-	hypothetical protein
1504	 43.96	+1	1381643..1383025	+	460	33240955	-	Pro1506	-	G3E family GTPase
1505	 45.62	+2	1383013..1384086	+	357	33240956	-	Pro1507	-	WD-40 repeat-containing protein
1506	 31.13	-1	1384141..1385229	+	362	33240957	-	Pro1508	-	G3E family GTPase
1507	 36.36	0	1385685..1385849	+	54	33240958	-	Pro1509	-	hypothetical protein
1508	 32.69	-1	1385984..1386139	-	51	33240959	-	Pro1510	-	hypothetical protein
1509	 42.44	+1	1386430..1386912	-	160	33240960	-	Pro1511	-	hypothetical protein
1510	 42.50	+1	1387252..1387371	+	39	33240961	hli13	Pro1512	-	high light inducible protein hli13
1511	 39.58	0	1387371..1387514	+	47	33240962	hli10	Pro1513	-	high light inducible protein hli10
1512	 43.52	+1	1387548..1387655	+	35	33240963	hli11	Pro1514	-	high light inducible protein hli11
1513	 37.93	0	1387748..1387921	+	57	33240964	-	Pro1515	-	hypothetical protein
1514	 36.67	0	1388012..1388131	+	39	33240965	hli1	Pro1516	-	high light inducible protein hli1
1515	 41.81	+1	1388593..1388769	+	58	33240966	-	Pro1517	-	hypothetical protein
1516	 37.21	0	1388887..1389015	+	42	33240967	-	Pro1518	-	hypothetical protein
1517	 40.21	0	1389227..1389415	+	62	33240968	-	Pro1519	-	hypothetical protein
1518	 32.03	-1	1389491..1389721	-	76	33240969	-	Pro1520	-	hypothetical protein
37.01	MEAN

3.99	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.