IslandPathversion 1.0

IslandPath Analysis: Prochlorococcus marinus subsp. marinus str. CCMP1375



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.01 STD DEV: 3.99
Prochlorococcus marinus subsp. marinus str. CCMP1375, complete genome - 1..1751080
1883 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1345	 38.34	0	1250700..1251617	+	305	33240796	ribF	Pro1347	-	putative riboflavin kinase/FAD synthase
1346	 35.25	0	1251780..1252820	+	346	33240797	thiE	Pro1348	-	thiamine-phosphate pyrophosphorylase
1347	 34.74	0	1252817..1253029	+	70	33240798	thiS	Pro1349	-	sulfur transfer protein
1348	 41.67	+1	1253279..1253446	+	55	33240799	-	Pro1350	-	hypothetical protein
1349	 39.26	0	1253515..1253649	+	44	33240800	-	Pro1351	-	hypothetical protein
1350	 40.48	0	1253660..1254331	-	223	33240801	-	Pro1352	-	circadian phase modifier CpmA-like protein
1351	 34.44	0	1254328..1254777	-	149	33240802	-	Pro1353	-	hypothetical protein
1352	 39.54	0	1254780..1256003	-	407	33240803	trmD/ispF	Pro1354	-	tRNA-(guanine-N1)-methyltransferase fused to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
1353	 38.41	0	1256009..1256953	-	314	33240804	era	Pro1355	-	GTP-binding protein Era
1354	 37.38	0	1257003..1257521	+	172	33240805	-	Pro1356	-	hypothetical protein
1355	 41.06	+1	1257588..1258325	-	245	33240806	-	Pro1357	-	integral membrane protein, interacts with FtsH
1356	 40.02	0	1258398..1259369	-	323	33240807	phoH	Pro1358	-	phosphate starvation-inducible protein PhoH
1357	 42.42	+1	1259377..1259772	-	131	33240808	rpsP	Pro1359	-	30S ribosomal protein S16
1358	 42.87	+1	1259847..1261304	-	485	33240809	ffh	Pro1360	-	signal recognition particle protein
1359	 36.98	0	1261377..1263434	-	685	33240810	-	Pro1361	-	cell division protein Ftn2
1360	 41.64	+1	1263536..1264630	+	364	33240811	acoA	Pro1362	-	pyruvate dehydrogenase E1 alpha subunit
1361	 39.17	0	1264686..1265627	-	313	33240812	rpoD	Pro1363	-	DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
1362	 38.65	0	1265759..1267318	-	519	33240813	-	Pro1364	-	fused sugar kinase/uncharacterized domain-containing protein
1363	 38.57	0	1267363..1268583	+	406	33240814	trmU	Pro1365	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
1364	 40.27	0	1268586..1270070	-	494	33240815	lnt	Pro1366	-	putative apolipoprotein n-acyltransferase
1365	 41.58	+1	1270179..1270772	+	197	33240816	fkpA	Pro1367	-	FKBP-type peptidyl-prolyl cis-trans isomerase (PPIase)
1366	 40.93	0	1270861..1271334	+	157	33240817	-	Pro1368	-	putative nickel-containing superoxide dismutase precursor (NISOD)
1367	 29.92	-1	1271423..1271686	+	87	33240818	-	Pro1369	-	Signal peptidase I
1368	 39.16	0	1271704..1272372	-	222	33240819	-	Pro1370	-	hydrogenase accessory protein
1369	 37.07	0	1272471..1273352	-	293	33240820	trpC	Pro1371	-	indole-3-glycerol-phosphate synthase
1370	 40.80	0	1273375..1274820	-	481	33240821	lpd	Pro1372	-	dihydrolipoamide dehydrogenase
1371	 40.88	0	1274836..1275630	-	264	33240822	spoU	Pro1373	-	rRNA methylase
1372	 39.59	0	1276078..1277451	+	457	33240823	murA	Pro1374	-	UDP-N-acetylglucosamine enolpyruvyl transferase
1373	 37.04	0	1277574..1278761	+	395	33240824	argD	Pro1375	-	acetylornithine aminotransferase
1374	 35.52	0	1278758..1279993	+	411	33240825	folC	Pro1376	-	folylpolyglutamate synthase
1375	 38.40	0	1279998..1281338	-	446	33240826	glcD	Pro1377	-	FAD/FMN-containing dehydrogenase
1376	 38.88	0	1281331..1282629	-	432	33240827	ssnA	Pro1378	-	putative cytosine deaminase
1377	 37.04	0	1282845..1284245	+	466	33240828	miaB	Pro1379	-	2-methylthioadenine synthetase
1378	 36.27	0	1284301..1285356	+	351	33240829	ddlA	Pro1380	-	D-alanine-D-alanine ligase and related ATP-grasp enzyme
1379	 44.28	+1	1285410..1285820	+	136	33240830	-	Pro1381	-	hypothetical protein
1380	 34.92	0	1285778..1286596	+	272	33240831	ftsQ	Pro1382	-	cell division protein FtsQ
1381	 44.18	+1	1286755..1287870	+	371	33240832	ftsZ	Pro1383	-	cell division protein FtsZ
1382	 41.25	+1	1288028..1288798	+	256	33240833	panB	Pro1384	-	ketopantoate hydroxymethyltransferase
1383	 35.89	0	1288767..1290017	-	416	33240834	hemN	Pro1385	-	putative oxygen-independent coproporphyrinogen III oxidase
1384	 36.49	0	1290126..1291235	+	369	33240835	-	Pro1386	-	hypothetical protein
1385	 39.64	0	1291274..1291939	+	221	33240836	clpP	Pro1387	-	ATP-dependent Clp protease-like protein
1386	 40.96	0	1291982..1292584	+	200	33240837	clpP	Pro1388	-	ATP-dependent Clp protease proteolytic subunit
1387	 40.96	0	1292746..1293741	+	331	33240838	ilvC	Pro1389	-	ketol-acid reductoisomerase
1388	 34.47	0	1293786..1294754	+	322	33240839	cbiB	Pro1390	-	cobalamin biosynthesis protein CobD/CbiB
1389	 35.91	0	1294762..1295499	-	245	33240840	wcaJ	Pro1391	-	sugar transferase
1390	 37.71	0	1295550..1296761	-	403	33240841	rfaG	Pro1392	-	glycosyltransferase
1391	 31.08	-1	1296804..1297247	-	147	33240842	-	Pro1393	-	NAD(P)H-quinone oxidoreductase NdhF subunit, fragment
1392	 24.24	-2	1297539..1297703	+	54	33240843	-	Pro1394	-	hypothetical protein
1393	 34.46	0	1297722..1297988	+	88	33240844	hli6	Pro1395	-	high light inducible protein hli6
1394	 31.37	-1	1298052..1298255	+	67	33240845	-	Pro1396	-	hypothetical protein
1395	 35.77	0	1298276..1298521	-	81	33240846	-	Pro1397	-	hypothetical protein
1396	 36.70	0	1299121..1299417	-	98	33240847	-	Pro1398	-	hypothetical protein
1397	 28.93	-2	1299542..1299904	-	120	33240848	-	Pro1399	-	hypothetical protein
1398	 32.91	-1	1299901..1300851	-	316	33240849	glnS	Pro1400	-	glutamyl/glutaminyl-tRNA synthetase
1399	 43.84	+1	1300942..1301217	-	91	33240850	himA	Pro1401	-	histone-like DNA-binding protein
1400	 40.72	0	1301377..1302012	-	211	33240851	gloB	Pro1402	-	metallo-beta-lactamase superfamily hydrolase
1401	 35.94	0	1302061..1304166	+	701	33240852	pulA	Pro1403	-	putative isoamylase
1402	 39.22	0	1304392..1305750	+	452	33240853	melB	Pro1404	-	putative GPH family sugar transporter
1403	 41.50	+1	1305747..1306493	+	248	33240854	ttg2B	Pro1405	-	putative transporter, membrane component
1404	 32.60	-1	1306499..1306906	+	135	33240855	-	Pro1406	-	hypothetical protein
1405	 36.91	0	1306946..1307980	+	344	33240856	-	Pro1407	-	hypothetical protein
1406	 36.08	0	1307980..1308597	+	205	33240857	-	Pro1408	-	hypothetical protein
1407	 37.07	0	1308589..1309311	-	240	33240858	pyrF	Pro1409	-	orotidine-5'-phosphate decarboxylase
1408	 37.57	0	1309332..1310582	-	416	33240859	tyrS	Pro1410	-	tyrosyl-tRNA synthetase
1409	 34.89	0	1310635..1310955	-	106	33240860	-	Pro1411	-	hypothetical protein
1410	 35.66	0	1311115..1311717	+	200	33240861	-	Pro1412	-	hypothetical protein
1411	 40.58	0	1311756..1313246	+	496	33240862	pepB	Pro1413	-	leucyl aminopeptidase
1412	 34.27	0	1313262..1313900	-	212	33240863	msrA	Pro1414	-	peptide methionine sulfoxide reductase
1413	 37.08	0	1313900..1315072	-	390	33240864	lpxB	Pro1415	-	lipid-A-disaccharide synthase
1414	 39.53	0	1315075..1315929	-	284	33240865	lpxA	Pro1416	-	UDP-N-acetylglucosamine acyltransferase
1415	 39.04	0	1315934..1316389	-	151	33240866	fabZ	Pro1417	-	(3R)-hydroxymyristoyl-ACP dehydratase
1416	 40.25	0	1316382..1317248	-	288	33240867	lpxC	Pro1418	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
1417	 36.18	0	1317250..1319742	-	830	33240868	-	Pro1419	-	import-associated channel, chloroplast protein IAP75
1418	 35.92	0	1319802..1320536	-	244	33240869	purC	Pro1420	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
1419	 38.42	0	1320693..1322030	+	445	33240870	purD	Pro1421	-	phosphoribosylamine--glycine ligase
1420	 35.46	0	1322037..1324109	+	690	33240871	-	Pro1422	-	two-component sensor histidine kinase
1421	 38.18	0	1324116..1325621	-	501	33240872	kaiC	Pro1423	-	circadian clock protein KaiC
1422	 39.55	0	1325722..1326075	-	117	33240873	kaiB	Pro1424	-	circadian clock protein KaiB
1423	 35.95	0	1326239..1326697	+	152	33240874	rplU	Pro1425	-	ribosomal protein L21
1424	 40.91	0	1326721..1326984	+	87	33240875	rpmA	Pro1426	-	50S ribosomal protein L27
1425	 33.47	0	1326981..1327739	-	252	33240876	-	Pro1427	-	SAM-dependent methyltransferase
1426	 36.41	0	1327826..1328767	+	313	33240877	truB	Pro1428	-	pseudouridine synthase
1427	 34.37	0	1328787..1330046	-	419	33240878	spoIID	Pro1429	-	SpoIID protein
1428	 39.88	0	1330159..1331121	+	320	33240879	elaC	Pro1430	-	metallo-beta-lactamase superfamily protein
1429	 38.92	0	1331190..1331744	+	184	33240880	-	Pro1431	-	pentapeptide repeat-containing protein
1430	 45.64	+2	1331835..1332029	-	64	33240881	-	Pro1432	-	hypothetical protein
1431	 42.21	+1	1332225..1332686	-	153	33240882	-	Pro1433	-	hypothetical protein
1432	 43.67	+1	1332720..1333019	-	99	33240883	fdx	Pro1434	-	ferredoxin
1433	 37.27	0	1333186..1334100	-	304	33240884	prmA	Pro1435	-	ribosomal protein L11 methylase
1434	 40.08	0	1334126..1335712	-	528	33240885	serA	Pro1436	-	putative D-3-phosphoglycerate dehydrogenase (PGDH)
1435	 37.23	0	1335813..1336376	+	187	33240886	-	Pro1437	-	hypothetical protein
1436	 35.87	0	1336373..1337161	+	262	33240887	-	Pro1438	-	RNA-binding protein
1437	 36.09	0	1337319..1338731	+	470	33240888	murD	Pro1439	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
1438	 33.97	0	1338872..1339186	+	104	33240889	-	Pro1440	-	hypothetical protein
1439	 33.63	0	1339217..1339555	-	112	33240890	-	Pro1441	-	hypothetical protein
1440	 37.16	0	1339696..1339878	+	60	33240891	-	Pro1442	-	hypothetical protein
1441	 39.88	0	1340096..1340263	+	55	33240892	-	Pro1443	-	hypothetical protein
1442	 38.79	0	1340376..1340540	-	54	33240893	-	Pro1444	-	hypothetical protein
1443	 32.76	-1	1340747..1341265	+	172	33240894	apt	Pro1445	-	adenine phosphoribosyltransferase
1444	 29.25	-1	1341579..1341872	+	97	33240895	-	Pro1446	-	hypothetical protein
37.01	MEAN

3.99	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.