IslandPathversion 1.0

IslandPath Analysis: Prochlorococcus marinus subsp. marinus str. CCMP1375



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.01 STD DEV: 3.99
Prochlorococcus marinus subsp. marinus str. CCMP1375, complete genome - 1..1751080
1883 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1261	 34.99	0	1163358..1163720	-	120	33240712	-	Pro1263	-	hypothetical protein
1262	 29.77	-1	1163872..1164573	+	233	33240713	-	Pro1264	-	hypothetical protein
1263	 30.20	-1	1164742..1167198	+	818	33240714	-	Pro1265	-	hypothetical protein
1264	 29.11	-1	1167199..1167885	+	228	33240715	-	Pro1266	-	hypothetical protein
1265	 27.10	-2	1167975..1168856	+	293	33240716	-	Pro1267	-	calcineurin family phosphoesterase
1266	 37.60	0	1168897..1169787	+	296	33240717	glyQ	Pro1268	-	glycyl-tRNA synthetase subunit alpha
1267	 44.40	+1	1169899..1171452	+	517	33240718	-	Pro1269	-	porin-like protein
1268	 42.39	+1	1171620..1171862	-	80	33240719	-	Pro1270	-	hypothetical protein
1269	 36.19	0	1171958..1172623	-	221	33240720	piuC	Pro1271	-	putative hydroxylase
1270	 37.71	0	1172770..1173798	+	342	33240721	afuA	Pro1272	-	ABC-type Fe3+ transport system periplasmic component
1271	 28.16	-2	1174268..1174828	-	186	33240722	-	Pro1273	-	hypothetical protein
1272	 32.04	-1	1174866..1176800	+	644	33240723	-	Pro1274	-	DNA helicase
1273	 36.78	0	1177065..1177238	-	57	33240724	-	Pro1275	-	hypothetical protein
1274	 33.70	0	1177675..1178226	+	183	33240725	-	Pro1276	-	hypothetical protein
1275	 31.75	-1	1178442..1179323	+	293	33240726	smtA	Pro1277	-	SAM-dependent methyltransferase
1276	 31.97	-1	1179653..1180312	+	219	33240727	-	Pro1278	-	HAD superfamily hydrolase
1277	 30.30	-1	1180290..1181246	+	318	33240728	-	Pro1279	-	HAD superfamily hydrolase
1278	 34.32	0	1181185..1181991	+	268	33240729	-	Pro1280	-	transketolase
1279	 33.44	0	1182001..1182927	+	308	33240730	-	Pro1281	-	1-deoxy-xylulose 5-phosphate synthase
1280	 32.41	-1	1182924..1183790	+	288	33240731	wcaG	Pro1282	-	NAD dependent epimerase/dehydratase
1281	 31.15	-1	1183902..1184678	+	258	33240732	-	Pro1283	-	2OG-Fe(II) dioxygenase superfamily protein
1282	 31.18	-1	1184675..1185091	+	138	33240733	-	Pro1284	-	hypothetical protein
1283	 33.33	0	1185095..1185754	+	219	33240734	smtA	Pro1285	-	SAM-dependent methyltransferase
1284	 35.76	0	1185806..1186918	+	370	33240735	glf	Pro1286	-	UDP-galactopyranose mutase
1285	 28.26	-2	1186958..1188259	+	433	33240736	-	Pro1287	-	hypothetical protein
1286	 42.25	+1	1188562..1189626	+	354	33240737	pcbF	Pro1288	-	chlorophyll a/b binding light harvesting protein PcbF
1287	 37.56	0	1189952..1190803	-	283	33240738	-	Pro1289	-	hypothetical protein
1288	 38.21	0	1190861..1191823	-	320	33240739	-	Pro1290	-	hypothetical protein
1289	 40.31	0	1191765..1192997	-	410	33240740	-	Pro1291	-	adhesin-like protein
1290	 40.56	0	1193100..1193279	-	59	33240741	-	Pro1292	-	hypothetical protein
1291	 34.21	0	1193707..1195527	-	606	33240742	arnT	Pro1293	-	glycosyl transferase family protein
1292	 39.21	0	1195563..1196651	-	362	33240743	rfaG	Pro1294	-	glycosyltransferase
1293	 38.21	0	1196648..1197610	-	320	33240744	rhaT	Pro1295	-	DMT family permease
1294	 41.73	+1	1197664..1198473	+	269	33240745	sppA	Pro1296	-	signal peptide peptidase SppA (protease IV)
1295	 39.94	0	1198498..1198860	+	120	33240746	aroH	Pro1297	-	chorismate mutase
1296	 35.56	0	1198942..1199526	+	194	33240747	-	Pro1298	-	hypothetical protein
1297	 39.86	0	1199583..1199720	+	45	33240748	rpmH	Pro1299	-	50S ribosomal protein L34
1298	 34.90	0	1199779..1200162	+	127	33240749	rnpA	Pro1300	-	ribonuclease P protein component
1299	 39.05	0	1200162..1200563	+	133	33240750	-	Pro1301	-	hypothetical protein
1300	 38.82	0	1200654..1201802	+	382	33240751	yidC	Pro1302	-	putative inner membrane protein translocase component YidC
1301	 40.57	0	1201885..1203363	+	492	33240752	spoVK	Pro1303	-	AAA family ATPase
1302	 37.40	0	1203372..1204649	+	425	33240753	serS	Pro1304	-	seryl-tRNA synthetase
1303	 36.20	0	1204654..1205736	+	360	33240754	-	Pro1305	-	membrane-associated Zn-dependent protease
1304	 41.67	+1	1205795..1206094	+	99	33240755	rpsN	Pro1306	-	30S ribosomal protein S14
1305	 40.30	0	1206287..1208455	+	722	33240756	pnp	Pro1307	-	polynucleotide phosphorylase/polyadenylase
1306	 39.34	0	1208471..1209385	-	304	33240757	cysQ	Pro1308	-	3'-phosphoadenosine 5'-phosphosulfate 3'-phosphatase
1307	 37.36	0	1209387..1210304	+	305	33240758	-	Pro1309	-	tetrapyrrole methylase family protein
1308	 32.07	-1	1210325..1210561	+	78	33240759	-	Pro1310	-	hypothetical protein
1309	 35.40	0	1210574..1211299	-	241	33240760	-	Pro1311	-	hypothetical protein
1310	 34.32	0	1212167..1213582	-	471	33240761	ugd	Pro1312	-	UDP-glucose 6-dehydrogenase
1311	 35.82	0	1213586..1214509	-	307	33240762	wcaG	Pro1313	-	NAD dependent epimerase/dehydratase
1312	 35.63	0	1214631..1215674	-	347	33240763	galE	Pro1314	-	UDP-glucose 4-epimerase
1313	 35.19	0	1215866..1216891	-	341	33240764	wcaG	Pro1315	-	NAD dependent epimerase/dehydratase
1314	 33.09	0	1217122..1218336	+	404	33240765	wza	Pro1316	-	polysaccharide export-related periplasmic protein
1315	 35.07	0	1218351..1219040	-	229	33240766	-	Pro1317	-	protein distantly related to SAM-dependent methyltransferase
1316	 32.27	-1	1219466..1220125	+	219	33240767	hisB	Pro1318	-	HAD family phosphatase
1317	 34.15	0	1220127..1221353	+	408	33240768	-	Pro1319	-	FAD dependent oxidoreductase
1318	 35.25	0	1221358..1222086	+	242	33240769	GCD1	Pro1320	-	nucleotidyl transferase family enzyme
1319	 34.35	0	1222089..1222679	+	196	33240770	gmhA	Pro1321	-	phosphoheptose isomerase
1320	 34.85	0	1222693..1224207	+	504	33240771	rfaE	Pro1322	-	ADP-heptose synthase
1321	 33.23	0	1224296..1225243	+	315	33240772	wcaG	Pro1323	-	NAD dependent epimerase/dehydratase
1322	 27.75	-2	1225302..1226018	+	238	33240773	-	Pro1324	-	SAM-dependent methyltransferase
1323	 31.19	-1	1226040..1226924	+	294	33240774	wcaA	Pro1325	-	glycosyltransferase
1324	 29.69	-1	1226928..1227887	+	319	33240775	wcaA	Pro1326	-	glycosyltransferase
1325	 33.15	0	1227921..1229027	+	368	33240776	rfaG	Pro1327	-	glycosyltransferase
1326	 30.28	-1	1229035..1230018	+	327	33240777	wcaA	Pro1328	-	glycosyltransferase
1327	 29.22	-1	1230051..1231217	+	388	33240778	rfaG	Pro1329	-	glycosyltransferase
1328	 34.24	0	1231308..1233065	+	585	33240779	gumC	Pro1330	-	hypothetical protein
1329	 31.23	-1	1233124..1234359	+	411	33240780	-	Pro1331	-	hypothetical protein
1330	 32.55	-1	1234364..1236145	-	593	33240781	mdlB	Pro1332	-	ABC-type multidrug transport system ATPase and permease components
1331	 29.51	-1	1236299..1237162	-	287	33240782	smtA	Pro1333	-	SAM-dependent methyltransferase
1332	 30.52	-1	1237463..1238422	+	319	33240783	-	Pro1334	-	beta-1,4-N-acetylglucosaminyltransferase
1333	 31.65	-1	1238448..1240286	-	612	33240784	-	Pro1335	-	hypothetical protein
1334	 42.36	+1	1240339..1240947	-	202	33240785	lexA	Pro1336	-	SOS function regulatory protein, LexA repressor
1335	 38.77	0	1241014..1241970	-	318	33240786	argF	Pro1337	-	ornithine carbamoyltransferase
1336	 39.07	0	1242030..1243895	-	621	33240787	ftsH	Pro1338	-	cell division protein FtsH3
1337	 40.58	0	1243991..1245094	-	367	33240788	ribD	Pro1339	-	pyrimidine reductase
1338	 33.90	0	1245084..1245614	-	176	33240789	-	Pro1340	-	hypothetical protein
1339	 40.07	0	1245607..1245873	-	88	33240790	-	Pro1341	-	hypothetical protein
1340	 36.02	0	1245934..1247238	+	434	33240791	cobL	Pro1342	-	precorrin-6B methylase 2
1341	 43.89	+1	1247256..1248164	-	302	33240792	ppnK	Pro1343	-	inorganic polyphosphate/ATP-NAD kinase
1342	 38.49	0	1248203..1249210	-	335	33240793	pheS	Pro1344	-	phenylalanyl-tRNA synthetase alpha chain
1343	 40.18	0	1249282..1250070	+	262	33240794	surE	Pro1345	-	survival protein SurE
1344	 42.91	+1	1250076..1250639	-	187	33240795	-	Pro1346	-	hypothetical protein
1345	 38.34	0	1250700..1251617	+	305	33240796	ribF	Pro1347	-	putative riboflavin kinase/FAD synthase
1346	 35.25	0	1251780..1252820	+	346	33240797	thiE	Pro1348	-	thiamine-phosphate pyrophosphorylase
1347	 34.74	0	1252817..1253029	+	70	33240798	thiS	Pro1349	-	sulfur transfer protein
1348	 41.67	+1	1253279..1253446	+	55	33240799	-	Pro1350	-	hypothetical protein
1349	 39.26	0	1253515..1253649	+	44	33240800	-	Pro1351	-	hypothetical protein
1350	 40.48	0	1253660..1254331	-	223	33240801	-	Pro1352	-	circadian phase modifier CpmA-like protein
1351	 34.44	0	1254328..1254777	-	149	33240802	-	Pro1353	-	hypothetical protein
1352	 39.54	0	1254780..1256003	-	407	33240803	trmD/ispF	Pro1354	-	tRNA-(guanine-N1)-methyltransferase fused to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
1353	 38.41	0	1256009..1256953	-	314	33240804	era	Pro1355	-	GTP-binding protein Era
1354	 37.38	0	1257003..1257521	+	172	33240805	-	Pro1356	-	hypothetical protein
1355	 41.06	+1	1257588..1258325	-	245	33240806	-	Pro1357	-	integral membrane protein, interacts with FtsH
1356	 40.02	0	1258398..1259369	-	323	33240807	phoH	Pro1358	-	phosphate starvation-inducible protein PhoH
1357	 42.42	+1	1259377..1259772	-	131	33240808	rpsP	Pro1359	-	30S ribosomal protein S16
1358	 42.87	+1	1259847..1261304	-	485	33240809	ffh	Pro1360	-	signal recognition particle protein
1359	 36.98	0	1261377..1263434	-	685	33240810	-	Pro1361	-	cell division protein Ftn2
1360	 41.64	+1	1263536..1264630	+	364	33240811	acoA	Pro1362	-	pyruvate dehydrogenase E1 alpha subunit
37.01	MEAN

3.99	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.