IslandPathversion 1.0

IslandPath Analysis: Prochlorococcus marinus subsp. marinus str. CCMP1375



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.01 STD DEV: 3.99
Prochlorococcus marinus subsp. marinus str. CCMP1375, complete genome - 1..1751080
1883 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1200	 34.31	0	1112424..1113344	+	306	33240651	-	Pro1201	-	permease
1201	 36.18	0	1113529..1113774	+	81	33240652	-	Pro1202	-	hypothetical protein
1202	 37.16	0	1113963..1115270	+	435	33240653	mntH	Pro1203	-	Mn2+/Fe2+ transporter
1203	 37.17	0	1115324..1115662	-	112	33240654	-	Pro1204	-	MIF/phenylpyruvate tautomerase family protein
1204	 37.15	0	1115755..1116147	-	130	33240655	-	Pro1205	-	hypothetical protein
1205	 40.17	0	1116150..1116266	-	38	33240656	-	Pro1206	-	hypothetical protein
1206	 34.48	0	1116464..1116724	-	86	33240657	-	Pro1207	-	hypothetical protein
1207	 36.21	0	1116904..1118016	-	370	33240658	desA	Pro1208	-	Fatty acid desaturase
1208	 32.13	-1	1118372..1118620	-	82	33240659	-	Pro1209	-	hypothetical protein
1209	 39.35	0	1119024..1119488	-	154	33240660	-	Pro1210	-	nucleoside 2-deoxyribosyltransferase
1210	 39.28	0	1119493..1119879	-	128	33240661	-	Pro1211	-	phosphoribosyltransferase
1211	 33.74	0	1119968..1120459	-	163	33240662	-	Pro1212	-	hypothetical protein
1212	 32.90	-1	1120744..1120974	-	76	33240663	-	Pro1213	-	hypothetical protein
1213	 39.57	0	1121144..1122250	-	368	33240664	desA	Pro1214	-	Fatty acid desaturase
1214	 33.78	0	1122633..1122854	+	73	33240665	-	Pro1215	-	hypothetical protein
1215	 36.34	0	1122990..1123322	-	110	33240666	-	Pro1216	-	hypothetical protein
1216	 39.39	0	1123812..1124009	+	65	33240667	-	Pro1217	-	hypothetical protein
1217	 37.55	0	1124543..1124803	+	86	33240668	-	Pro1218	-	hypothetical protein
1218	 38.10	0	1124867..1125454	+	195	33240669	-	Pro1219	-	hypothetical protein
1219	 33.16	0	1125517..1126104	-	195	33240670	glpG	Pro1220	-	rhomboid family membrane serine protease
1220	 36.88	0	1126114..1126593	-	159	33240671	ctuE	Pro1221	-	glutathione peroxidase
1221	 33.95	0	1126677..1126838	+	53	33240672	-	Pro1222	-	hypothetical protein
1222	 37.31	0	1127426..1127827	+	133	33240673	-	Pro1223	-	hypothetical protein
1223	 33.33	0	1127972..1128268	-	98	33240674	-	Pro1224	-	hypothetical protein
1224	 35.19	0	1128356..1128787	+	143	33240675	prfB	Pro1225	-	hypothetical protein
1225	 40.62	0	1129473..1129760	-	95	33240676	-	Pro1226	-	hypothetical protein
1226	 39.31	0	1130027..1130746	-	239	33240677	kch	Pro1227	-	Kef-type K+ transporter NAD-binding component
1227	 33.33	0	1130800..1131051	-	83	33240678	-	Pro1228	-	hypothetical protein
1228	 36.57	0	1131357..1132253	+	298	33240679	mmsB	Pro1229	-	3-hydroxyisobutyrate dehydrogenase
1229	 32.56	-1	1132446..1132703	+	85	33240680	tatA	Pro1230	-	Sec-independent protein secretion pathway component TatA
1230	 35.11	0	1133344..1133961	+	205	33240681	-	Pro1231	-	hypothetical protein
1231	 37.73	0	1134012..1135103	-	363	33240682	-	Pro1232	-	translation-associated GTPase
1232	 36.53	0	1135226..1136287	+	353	33240683	acrA	Pro1233	-	HlyD family secretion protein
1233	 37.56	0	1136320..1139277	+	985	33240684	polA	Pro1234	-	DNA polymerase I
1234	 37.73	0	1139321..1140820	+	499	33240685	cysS	Pro1235	-	cysteinyl-tRNA synthetase
1235	 41.32	+1	1140924..1142162	+	412	33240686	dxr	Pro1236	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
1236	 38.66	0	1142159..1142515	+	118	33240687	-	Pro1237	-	ferredoxin
1237	 37.29	0	1142495..1143607	-	370	33240688	-	Pro1238	-	alpha/beta fold family hydrolase
1238	 40.28	0	1143594..1145033	-	479	33240689	pntB	Pro1239	-	putative nicotinamide nucleotide transhydrogenase, subunit beta
1239	 41.16	+1	1145046..1145339	-	97	33240690	pntA	Pro1240	-	putative nicotinamide nucleotide transhydrogenase, subunit alpha 2 (A2)
1240	 40.86	0	1145339..1146481	-	380	33240691	pntA	Pro1241	-	putative nicotinamide nucleotide transhydrogenase, subunit alpha 1 (A1)
1241	 31.71	-1	1146508..1146630	-	40	33240692	-	Pro1242	-	hypothetical protein
1242	 41.24	+1	1146615..1147196	+	193	33240693	-	Pro1243	-	hypothetical protein
1243	 33.74	0	1147398..1147640	+	80	33240694	-	Pro1244	-	hypothetical protein
1244	 37.75	0	1147746..1149104	+	452	33240695	trxB	Pro1245	-	thioredoxin reductase
1245	 44.68	+1	1149118..1149399	-	93	33240696	infA	Pro1246	-	translation initiation factor IF-1
1246	 34.72	0	1149471..1149686	-	71	33240697	-	Pro1247	-	hypothetical protein
1247	 38.63	0	1149747..1150709	-	320	33240698	-	Pro1248	-	putative chaperon-like protein for quinone binding in photosystem II
1248	 48.48	+2	1150769..1150867	-	32	33240699	petM	Pro1249	-	cytochrome b6-f complex subunit PetM
1249	 36.62	0	1151116..1152090	+	324	33240700	mhpC	Pro1250	-	alpha/beta fold family hydrolase
1250	 40.04	0	1152087..1152593	+	168	33240701	ilvH	Pro1251	-	acetolactate synthase 3 regulatory subunit
1251	 28.77	-2	1152648..1153349	-	233	33240702	ppiB	Pro1252	-	peptidyl-prolyl cis-trans isomerase
1252	 36.43	0	1153349..1153930	-	193	33240703	-	Pro1253	-	photosystem I assembly protein Ycf4
1253	 44.48	+1	1154108..1155184	+	358	33240704	psbD	Pro1254	-	photosystem II reaction center D2
1254	 43.46	+1	1155168..1156550	+	460	33240705	psbC	Pro1255	-	photosystem II PsbC protein (CP43)
1255	 33.81	0	1156646..1157272	-	208	33240706	maf	Pro1257	-	nucleotide-binding protein implicated in inhibition of septum formation
1256	 29.90	-1	1157248..1157655	+	135	33240707	-	Pro1258	-	hypothetical protein
1257	 37.47	0	1157652..1159175	+	507	33240708	cobQ	Pro1259	-	cobyric acid synthase
1258	 37.40	0	1159172..1159417	+	81	33240709	fdx	Pro1260	-	hypothetical protein
1259	 32.49	-1	1159507..1160925	-	472	33240710	-	Pro1261	-	Zn-dependent hydrolase of the beta-lactamase fold, partial
1260	 31.04	-1	1160963..1163053	-	696	33240711	-	Pro1262	-	membrane associated acyltransferase
1261	 34.99	0	1163358..1163720	-	120	33240712	-	Pro1263	-	hypothetical protein
1262	 29.77	-1	1163872..1164573	+	233	33240713	-	Pro1264	-	hypothetical protein
1263	 30.20	-1	1164742..1167198	+	818	33240714	-	Pro1265	-	hypothetical protein
1264	 29.11	-1	1167199..1167885	+	228	33240715	-	Pro1266	-	hypothetical protein
1265	 27.10	-2	1167975..1168856	+	293	33240716	-	Pro1267	-	calcineurin family phosphoesterase
1266	 37.60	0	1168897..1169787	+	296	33240717	glyQ	Pro1268	-	glycyl-tRNA synthetase subunit alpha
1267	 44.40	+1	1169899..1171452	+	517	33240718	-	Pro1269	-	porin-like protein
1268	 42.39	+1	1171620..1171862	-	80	33240719	-	Pro1270	-	hypothetical protein
1269	 36.19	0	1171958..1172623	-	221	33240720	piuC	Pro1271	-	putative hydroxylase
1270	 37.71	0	1172770..1173798	+	342	33240721	afuA	Pro1272	-	ABC-type Fe3+ transport system periplasmic component
1271	 28.16	-2	1174268..1174828	-	186	33240722	-	Pro1273	-	hypothetical protein
1272	 32.04	-1	1174866..1176800	+	644	33240723	-	Pro1274	-	DNA helicase
1273	 36.78	0	1177065..1177238	-	57	33240724	-	Pro1275	-	hypothetical protein
1274	 33.70	0	1177675..1178226	+	183	33240725	-	Pro1276	-	hypothetical protein
1275	 31.75	-1	1178442..1179323	+	293	33240726	smtA	Pro1277	-	SAM-dependent methyltransferase
1276	 31.97	-1	1179653..1180312	+	219	33240727	-	Pro1278	-	HAD superfamily hydrolase
1277	 30.30	-1	1180290..1181246	+	318	33240728	-	Pro1279	-	HAD superfamily hydrolase
1278	 34.32	0	1181185..1181991	+	268	33240729	-	Pro1280	-	transketolase
1279	 33.44	0	1182001..1182927	+	308	33240730	-	Pro1281	-	1-deoxy-xylulose 5-phosphate synthase
1280	 32.41	-1	1182924..1183790	+	288	33240731	wcaG	Pro1282	-	NAD dependent epimerase/dehydratase
1281	 31.15	-1	1183902..1184678	+	258	33240732	-	Pro1283	-	2OG-Fe(II) dioxygenase superfamily protein
1282	 31.18	-1	1184675..1185091	+	138	33240733	-	Pro1284	-	hypothetical protein
1283	 33.33	0	1185095..1185754	+	219	33240734	smtA	Pro1285	-	SAM-dependent methyltransferase
1284	 35.76	0	1185806..1186918	+	370	33240735	glf	Pro1286	-	UDP-galactopyranose mutase
1285	 28.26	-2	1186958..1188259	+	433	33240736	-	Pro1287	-	hypothetical protein
1286	 42.25	+1	1188562..1189626	+	354	33240737	pcbF	Pro1288	-	chlorophyll a/b binding light harvesting protein PcbF
1287	 37.56	0	1189952..1190803	-	283	33240738	-	Pro1289	-	hypothetical protein
1288	 38.21	0	1190861..1191823	-	320	33240739	-	Pro1290	-	hypothetical protein
1289	 40.31	0	1191765..1192997	-	410	33240740	-	Pro1291	-	adhesin-like protein
1290	 40.56	0	1193100..1193279	-	59	33240741	-	Pro1292	-	hypothetical protein
1291	 34.21	0	1193707..1195527	-	606	33240742	arnT	Pro1293	-	glycosyl transferase family protein
1292	 39.21	0	1195563..1196651	-	362	33240743	rfaG	Pro1294	-	glycosyltransferase
1293	 38.21	0	1196648..1197610	-	320	33240744	rhaT	Pro1295	-	DMT family permease
1294	 41.73	+1	1197664..1198473	+	269	33240745	sppA	Pro1296	-	signal peptide peptidase SppA (protease IV)
1295	 39.94	0	1198498..1198860	+	120	33240746	aroH	Pro1297	-	chorismate mutase
1296	 35.56	0	1198942..1199526	+	194	33240747	-	Pro1298	-	hypothetical protein
1297	 39.86	0	1199583..1199720	+	45	33240748	rpmH	Pro1299	-	50S ribosomal protein L34
1298	 34.90	0	1199779..1200162	+	127	33240749	rnpA	Pro1300	-	ribonuclease P protein component
1299	 39.05	0	1200162..1200563	+	133	33240750	-	Pro1301	-	hypothetical protein
37.01	MEAN

3.99	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.