IslandPathversion 1.0

IslandPath Analysis: Prochlorococcus marinus subsp. marinus str. CCMP1375



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.01 STD DEV: 3.99
Prochlorococcus marinus subsp. marinus str. CCMP1375, complete genome - 1..1751080
1883 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1140	 33.17	0	1072868..1073470	+	200	33240591	-	Pro1141	-	N6-adenine-specific methylase
1141	 44.17	+1	1073451..1073570	-	39	33240592	petG	Pro1142	-	cytochrome b6-f complex subunit PetG
1142	 36.21	0	1073603..1074019	+	138	33240593	cccA	Pro1143	-	cytochrome C
1143	 33.06	0	1074016..1074756	+	246	33240594	lasT	Pro1144	-	rRNA methylase
1144	 33.24	0	1074790..1075827	+	345	33240595	penP	Pro1145	-	Beta-lactamase class A
1145	 42.06	+1	1075942..1077030	+	362	33240596	chlI	Pro1146	-	protoporphyrin IX magnesium chelatase subunit ChlI
1146	 38.46	0	1077035..1077502	+	155	33240597	ruvC	Pro1147	-	Holliday junction resolvasome endonuclease subunit
1147	 33.86	0	1077541..1078107	+	188	33240598	-	Pro1148	-	5-formyltetrahydrofolate cyclo-ligase
1148	 35.14	0	1078158..1078601	+	147	33240599	-	Pro1149	-	SufE protein
1149	 37.50	0	1078642..1079961	+	439	33240600	thrA	Pro1150	-	homoserine dehydrogenase
1150	 38.31	0	1080082..1080282	+	66	33240601	-	Pro1151	-	hypothetical protein
1151	 32.77	-1	1080330..1081931	+	533	33240602	ddpA	Pro1152	-	ABC transporter substrate-binding protein
1152	 37.84	0	1081924..1082943	+	339	33240603	dppB	Pro1153	-	ABC-type oligopeptide transport system permease
1153	 35.42	0	1082940..1084571	-	543	33240604	-	Pro1154	-	serine peptidase
1154	 34.59	0	1084544..1085818	+	424	33240605	proP	Pro1155	-	major facilitator superfamily permease
1155	 36.36	0	1085824..1086120	-	98	33240606	-	Pro1156	-	hypothetical protein
1156	 40.48	0	1086518..1087342	+	274	33240607	rbsK	Pro1157	-	ribokinase family sugar kinase
1157	 19.61	-2	1087360..1087563	+	67	33240608	-	Pro1158	-	hypothetical protein
1158	 33.33	0	1087742..1088026	-	94	33240609	-	Pro1159	-	hypothetical protein
1159	 35.38	0	1088118..1088312	-	64	33240610	-	Pro1160	-	hypothetical protein
1160	 39.86	0	1088437..1088988	-	183	33240611	-	Pro1161	-	pentapeptide repeat-containing protein
1161	 35.52	0	1089113..1089295	-	60	33240612	-	Pro1162	-	hypothetical protein
1162	 34.80	0	1089611..1089814	+	67	33240613	-	Pro1163	-	hypothetical protein
1163	 39.46	0	1089871..1090392	-	173	33240614	isiB	Pro1164	-	flavodoxin FldA
1164	 35.58	0	1090497..1090763	-	88	33240615	-	Pro1165	-	hypothetical protein
1165	 32.64	-1	1090875..1091018	-	47	33240616	-	Pro1166	-	hypothetical protein
1166	 42.45	+1	1091282..1092367	-	361	33240617	pcbD	Pro1167	-	chlorophyll a/b-binding light-harvesting protein PcbD
1167	 39.35	0	1092962..1093177	+	71	33240618	-	Pro1168	-	hypothetical protein
1168	 43.62	+1	1093355..1094404	-	349	33240619	pcbB	Pro1169	-	chlorophyll a/b binding light harvesting protein PcbB
1169	 31.37	-1	1094438..1094743	+	101	33240620	-	Pro1170	-	hypothetical protein
1170	 33.33	0	1094967..1095203	+	78	33240621	-	Pro1171	-	hypothetical protein
1171	 38.68	0	1095230..1095472	+	80	33240622	-	Pro1172	-	hypothetical protein
1172	 41.67	+1	1095606..1095773	+	55	33240623	-	Pro1173	-	hypothetical protein
1173	 42.12	+1	1095893..1096951	-	352	33240624	pcbH	Pro1174	-	chlorophyll a/b binding light harvesting protein PcbH
1174	 45.37	+2	1097458..1097565	+	35	33240625	hli8	Pro1175	-	high light inducible protein hli8
1175	 39.05	0	1097580..1097789	+	69	33240626	hli7	Pro1176	-	high light inducible protein hli7
1176	 40.74	0	1098074..1098397	+	107	33240627	-	Pro1177	-	hypothetical protein
1177	 36.36	0	1098837..1099067	+	76	33240628	-	Pro1178	-	hypothetical protein
1178	 36.11	0	1099132..1099347	-	71	33240629	-	Pro1179	-	hypothetical protein
1179	 34.83	0	1099484..1099750	-	88	33240630	hugZ	Pro1180	-	putative heme iron utilization protein
1180	 31.83	-1	1099793..1100455	-	220	33240631	-	Pro1181	-	hypothetical protein
1181	 27.94	-2	1100638..1100841	+	67	33240632	-	Pro1182	-	hypothetical protein
1182	 36.11	0	1100854..1101069	-	71	33240633	-	Pro1183	-	hypothetical protein
1183	 34.52	0	1101411..1102592	+	393	33240634	purT	Pro1184	-	phosphoribosylglycinamide formyltransferase 2
1184	 37.29	0	1102737..1103039	+	100	33240635	-	Pro1185	-	hypothetical protein
1185	 37.50	0	1103247..1103366	+	39	33240636	-	Pro1186	-	hypothetical protein
1186	 36.27	0	1103408..1104157	-	249	33240637	-	Pro1187	-	hypothetical protein
1187	 28.49	-2	1104450..1104635	+	61	33240638	-	Pro1188	-	hypothetical protein
1188	 28.63	-2	1104601..1104834	+	77	33240639	-	Pro1189	-	hypothetical protein
1189	 32.77	-1	1104944..1105120	-	58	33240640	-	Pro1190	-	hypothetical protein
1190	 35.22	0	1105175..1105651	-	158	33240641	-	Pro1191	-	hypothetical protein
1191	 36.67	0	1105916..1106875	+	319	33240642	tas	Pro1192	-	oxidoreductase
1192	 31.52	-1	1106880..1107155	-	91	33240643	-	Pro1193	-	hypothetical protein
1193	 33.91	0	1107344..1107517	-	57	33240644	-	Pro1194	-	hypothetical protein
1194	 37.42	0	1107661..1107978	+	105	33240645	-	Pro1195	-	hypothetical protein
1195	 35.71	0	1108136..1110067	+	643	33240646	uup	Pro1196	-	ABC transporter ATPase
1196	 40.40	0	1110206..1110502	-	98	33240647	-	Pro1197	-	RNA-binding protein
1197	 33.80	0	1110734..1111165	+	143	33240648	-	Pro1198	-	hypothetical protein
1198	 35.71	0	1111490..1111699	+	69	33240649	-	Pro1199	-	hypothetical protein
1199	 37.91	0	1111747..1112379	+	210	33240650	-	Pro1200	-	dioxygenase
1200	 34.31	0	1112424..1113344	+	306	33240651	-	Pro1201	-	permease
1201	 36.18	0	1113529..1113774	+	81	33240652	-	Pro1202	-	hypothetical protein
1202	 37.16	0	1113963..1115270	+	435	33240653	mntH	Pro1203	-	Mn2+/Fe2+ transporter
1203	 37.17	0	1115324..1115662	-	112	33240654	-	Pro1204	-	MIF/phenylpyruvate tautomerase family protein
1204	 37.15	0	1115755..1116147	-	130	33240655	-	Pro1205	-	hypothetical protein
1205	 40.17	0	1116150..1116266	-	38	33240656	-	Pro1206	-	hypothetical protein
1206	 34.48	0	1116464..1116724	-	86	33240657	-	Pro1207	-	hypothetical protein
1207	 36.21	0	1116904..1118016	-	370	33240658	desA	Pro1208	-	Fatty acid desaturase
1208	 32.13	-1	1118372..1118620	-	82	33240659	-	Pro1209	-	hypothetical protein
1209	 39.35	0	1119024..1119488	-	154	33240660	-	Pro1210	-	nucleoside 2-deoxyribosyltransferase
1210	 39.28	0	1119493..1119879	-	128	33240661	-	Pro1211	-	phosphoribosyltransferase
1211	 33.74	0	1119968..1120459	-	163	33240662	-	Pro1212	-	hypothetical protein
1212	 32.90	-1	1120744..1120974	-	76	33240663	-	Pro1213	-	hypothetical protein
1213	 39.57	0	1121144..1122250	-	368	33240664	desA	Pro1214	-	Fatty acid desaturase
1214	 33.78	0	1122633..1122854	+	73	33240665	-	Pro1215	-	hypothetical protein
1215	 36.34	0	1122990..1123322	-	110	33240666	-	Pro1216	-	hypothetical protein
1216	 39.39	0	1123812..1124009	+	65	33240667	-	Pro1217	-	hypothetical protein
1217	 37.55	0	1124543..1124803	+	86	33240668	-	Pro1218	-	hypothetical protein
1218	 38.10	0	1124867..1125454	+	195	33240669	-	Pro1219	-	hypothetical protein
1219	 33.16	0	1125517..1126104	-	195	33240670	glpG	Pro1220	-	rhomboid family membrane serine protease
1220	 36.88	0	1126114..1126593	-	159	33240671	ctuE	Pro1221	-	glutathione peroxidase
1221	 33.95	0	1126677..1126838	+	53	33240672	-	Pro1222	-	hypothetical protein
1222	 37.31	0	1127426..1127827	+	133	33240673	-	Pro1223	-	hypothetical protein
1223	 33.33	0	1127972..1128268	-	98	33240674	-	Pro1224	-	hypothetical protein
1224	 35.19	0	1128356..1128787	+	143	33240675	prfB	Pro1225	-	hypothetical protein
1225	 40.62	0	1129473..1129760	-	95	33240676	-	Pro1226	-	hypothetical protein
1226	 39.31	0	1130027..1130746	-	239	33240677	kch	Pro1227	-	Kef-type K+ transporter NAD-binding component
1227	 33.33	0	1130800..1131051	-	83	33240678	-	Pro1228	-	hypothetical protein
1228	 36.57	0	1131357..1132253	+	298	33240679	mmsB	Pro1229	-	3-hydroxyisobutyrate dehydrogenase
1229	 32.56	-1	1132446..1132703	+	85	33240680	tatA	Pro1230	-	Sec-independent protein secretion pathway component TatA
1230	 35.11	0	1133344..1133961	+	205	33240681	-	Pro1231	-	hypothetical protein
1231	 37.73	0	1134012..1135103	-	363	33240682	-	Pro1232	-	translation-associated GTPase
1232	 36.53	0	1135226..1136287	+	353	33240683	acrA	Pro1233	-	HlyD family secretion protein
1233	 37.56	0	1136320..1139277	+	985	33240684	polA	Pro1234	-	DNA polymerase I
1234	 37.73	0	1139321..1140820	+	499	33240685	cysS	Pro1235	-	cysteinyl-tRNA synthetase
1235	 41.32	+1	1140924..1142162	+	412	33240686	dxr	Pro1236	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
1236	 38.66	0	1142159..1142515	+	118	33240687	-	Pro1237	-	ferredoxin
1237	 37.29	0	1142495..1143607	-	370	33240688	-	Pro1238	-	alpha/beta fold family hydrolase
1238	 40.28	0	1143594..1145033	-	479	33240689	pntB	Pro1239	-	putative nicotinamide nucleotide transhydrogenase, subunit beta
1239	 41.16	+1	1145046..1145339	-	97	33240690	pntA	Pro1240	-	putative nicotinamide nucleotide transhydrogenase, subunit alpha 2 (A2)
37.01	MEAN

3.99	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.