IslandPathversion 1.0

IslandPath Analysis: Prochlorococcus marinus subsp. marinus str. CCMP1375



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.01 STD DEV: 3.99
Prochlorococcus marinus subsp. marinus str. CCMP1375, complete genome - 1..1751080
1883 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1060	 38.68	0	978296..979642	-	448	33240511	-	Pro1061	-	hypothetical protein
1061	 39.47	0	979891..980460	+	189	33240512	-	Pro1062	-	hypothetical protein
1062	 31.67	-1	980466..981485	+	339	33240513	trpS	Pro1063	-	tryptophanyl-tRNA synthetase
1063	 33.64	0	981485..983416	+	643	33240514	thrS	Pro1064	-	threonyl-tRNA synthetase
1064	 35.05	0	983438..984484	+	348	33240515	glk	Pro1065	-	glucokinase
1065	 41.14	+1	984498..985445	+	315	33240516	thrB	Pro1066	-	homoserine kinase
1066	 35.81	0	985503..987074	+	523	33240517	ndhD	Pro1067	-	NAD(P)H-quinone oxidoreductase subunit 4
1067	 36.15	0	987084..989210	+	708	33240518	dcp	Pro1068	-	peptidase family M3
1068	 35.74	0	989172..989795	-	207	33240519	lipA	Pro1069	-	alpha/beta fold family lipase
1069	 34.64	0	989799..990182	-	127	33240520	folB	Pro1070	-	dihydroneopterin aldolase
1070	 38.52	0	990188..991498	-	436	33240521	proA	Pro1071	-	gamma-glutamyl phosphate reductase
1071	 31.43	-1	991574..991993	-	139	33240522	nagC	Pro1072	-	sugar kinase
1072	 35.17	0	991996..995925	-	1309	33240523	-	Pro1073	-	hypothetical protein
1073	 39.23	0	996048..996641	+	197	33240524	-	Pro1074	-	hypothetical protein
1074	 31.49	-1	996619..997053	+	144	33240525	-	Pro1075	-	hypothetical protein
1075	 27.34	-2	997118..997384	+	88	33240526	-	Pro1076	-	hypothetical protein
1076	 39.24	0	997399..999006	+	535	33240527	-	Pro1077	-	alpha/beta fold family hydrolase
1077	 38.40	0	999042..1001309	+	755	33240528	glgB	Pro1078	-	glycogen branching enzyme
1078	 38.73	0	1001451..1002506	+	351	33240529	hemE	Pro1079	-	uroporphyrinogen decarboxylase
1079	 35.09	0	1002503..1003525	+	340	33240530	wcaG	Pro1080	-	NAD dependent epimerase/dehydratase
1080	 44.17	+1	1003534..1003893	+	119	33240531	petE	Pro1081	-	plastocyanin
1081	 32.64	-1	1004268..1006862	+	864	33240532	clpA	Pro1082	-	ATPase with chaperone activity ATP-binding subunit
1082	 45.93	+2	1006867..1007628	-	253	33240533	ompR	Pro1083	-	two-component response regulator
1083	 34.07	0	1007703..1007975	+	90	33240534	-	Pro1084	-	hypothetical protein
1084	 35.80	0	1007980..1008303	-	107	33240535	-	Pro1085	-	glutaredoxin-like protein
1085	 39.39	0	1008319..1008549	-	76	33240536	colA	Pro1086	-	BolA-like protein
1086	 35.40	0	1008601..1009131	-	176	33240537	-	Pro1087	-	hypothetical protein
1087	 39.47	0	1009168..1009851	-	227	33240538	plsC	Pro1088	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
1088	 38.33	0	1010005..1010745	+	246	33240539	pdxJ	Pro1089	-	pyridoxal phosphate biosynthetic protein PdxJ
1089	 35.69	0	1010770..1014081	+	1103	33240540	recC	Pro1090	-	exonuclease V gamma subunit
1090	 30.73	-1	1014078..1014614	+	178	33240541	STE14	Pro1091	-	S-isoprenylcysteine O-methyltransferase related enzyme
1091	 36.62	0	1014658..1018428	+	1256	33240542	recB	Pro1092	-	ATP-dependent exoDNAse beta subunit
1092	 34.57	0	1018431..1020125	+	564	33240543	recD	Pro1093	-	ATP-dependent exoDNAse alpha subunit
1093	 37.91	0	1020284..1022095	+	603	33240544	srmB	Pro1094	-	superfamily II DNA/RNA helicase
1094	 34.68	0	1022105..1022401	+	98	33240545	-	Pro1095	-	hypothetical protein
1095	 35.35	0	1022433..1024214	+	593	33240546	mdlB	Pro1096	-	ABC-type multidrug transport system ATPase and permease components
1096	 36.38	0	1024233..1024790	-	185	33240547	psbP	Pro1097	-	photosystem II oxygen evolving complex protein PsbP
1097	 37.84	0	1024995..1025504	+	169	33240548	recR	Pro1098	-	recombinational DNA repair protein
1098	 38.40	0	1025520..1026446	+	308	33240549	lipA	Pro1099	-	lipoyl synthase
1099	 38.86	0	1026443..1026967	-	174	33240550	-	Pro1100	-	hypothetical protein
1100	 37.58	0	1026964..1027929	-	321	33240551	-	Pro1101	-	sulfurtransferase
1101	 40.74	0	1027922..1028920	-	332	33240552	cioB	Pro1102	-	biotin synthase
1102	 39.33	0	1028932..1029732	-	266	33240553	uppS	Pro1103	-	undecaprenyl pyrophosphate synthase
1103	 38.38	0	1029745..1030635	-	296	33240554	-	Pro1104	-	hypothetical protein
1104	 36.99	0	1030664..1032031	-	455	33240555	lysA	Pro1105	-	diaminopimelate decarboxylase
1105	 32.68	-1	1032104..1032565	+	153	33240556	rimI	Pro1106	-	acetyltransferase
1106	 37.07	0	1032758..1035328	+	856	33240557	clpA	Pro1107	-	Clp protease ATP-binding subunit
1107	 34.30	0	1035363..1036496	+	377	33240558	gldA	Pro1108	-	glycerol dehydrogenase family protein
1108	 36.05	0	1036509..1037390	+	293	33240559	-	Pro1109	-	alpha/beta fold family hydrolase
1109	 26.45	-2	1037394..1038032	+	212	33240560	-	Pro1110	-	hypothetical protein
1110	 33.45	0	1038029..1038919	-	296	33240561	cdsA	Pro1111	-	CDP-diglyceride synthetase
1111	 38.32	0	1038919..1040241	-	440	33240562	ldcC	Pro1112	-	lysine decarboxylase
1112	 32.12	-1	1040409..1042055	+	548	33240563	aarF	Pro1113	-	protein kinase
1113	 31.23	-1	1042125..1042838	+	237	33240564	rsuA	Pro1114	-	16S rRNA pseudouridylate synthase
1114	 30.51	-1	1042850..1043344	+	164	33240565	-	Pro1115	-	hypothetical protein
1115	 36.75	0	1043407..1044957	-	516	33240566	malQ	Pro1116	-	putative 4-alpha-glucanotransferase
1116	 37.00	0	1045272..1045817	-	181	33240567	-	Pro1117	-	hypothetical protein
1117	 37.91	0	1045915..1046898	+	327	33240568	prsA	Pro1118	-	ribose-phosphate pyrophosphokinase
1118	 36.32	0	1046909..1047343	-	144	33240569	-	Pro1119	-	hypothetical protein
1119	 31.35	-1	1047452..1048006	-	184	33240570	-	Pro1120	-	hypothetical protein
1120	 37.70	0	1048119..1049264	+	381	33240571	-	Pro1121	-	adaptive-response sensory kinase
1121	 35.06	0	1049395..1049916	-	173	33240572	-	Pro1122	-	oligoketide cyclase family protein
1122	 38.54	0	1050143..1051237	+	364	33240573	petH	Pro1123	-	ferredoxin-NADP oxidoreductase (FNR)
1123	 39.84	0	1051431..1052951	+	506	33240574	zwf	Pro1124	-	glucose-6-phosphate 1-dehydrogenase
1124	 39.80	0	1052991..1054304	+	437	33240575	-	Pro1125	-	putative glucose 6-phosphate dehydrogenase effector OpcA
1125	 36.10	0	1054324..1055733	+	469	33240576	cobB	Pro1126	-	cobyrinic acid a,c-diamide synthase
1126	 37.01	0	1055744..1057183	-	479	33240577	-	Pro1127	-	DNA helicase related to phage enzyme
1127	 39.34	0	1057180..1057695	-	171	33240578	-	Pro1128	-	hypothetical protein
1128	 40.86	0	1057692..1058594	-	300	33240579	ispA	Pro1129	-	polyprenyl synthetase
1129	 38.50	0	1058637..1059545	-	302	33240580	folD	Pro1130	-	5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase
1130	 37.34	0	1059598..1061718	+	706	33240581	-	Pro1131	-	HD superfamily hydrolase
1131	 36.39	0	1061781..1062173	-	130	33240582	-	Pro1132	-	hypothetical protein
1132	 40.51	0	1062277..1062513	-	78	33240583	-	Pro1133	-	hypothetical protein
1133	 40.04	0	1062576..1064186	-	536	33240584	leuA	Pro1134	-	2-isopropylmalate synthase
1134	 35.95	0	1064271..1065836	+	521	33240585	-	Pro1135	-	hypothetical protein
1135	 36.50	0	1065842..1067071	-	409	33240586	lcyB	Pro1136	-	lycopene beta cyclase related dehydrogenase
1136	 37.86	0	1067068..1069695	-	875	33240587	gyrA	Pro1137	-	DNA gyrase subunit A
1137	 41.49	+1	1070538..1071701	+	387	33240588	guaB	Pro1138	-	inositol-5-monophosphate dehydrogenase
1138	 43.52	+1	1071876..1072199	+	107	33240589	trxA	Pro1139	-	thioredoxin family protein
1139	 34.42	0	1072230..1072871	+	213	33240590	hisH	Pro1140	-	glutamine amidotransferase
1140	 33.17	0	1072868..1073470	+	200	33240591	-	Pro1141	-	N6-adenine-specific methylase
1141	 44.17	+1	1073451..1073570	-	39	33240592	petG	Pro1142	-	cytochrome b6-f complex subunit PetG
1142	 36.21	0	1073603..1074019	+	138	33240593	cccA	Pro1143	-	cytochrome C
1143	 33.06	0	1074016..1074756	+	246	33240594	lasT	Pro1144	-	rRNA methylase
1144	 33.24	0	1074790..1075827	+	345	33240595	penP	Pro1145	-	Beta-lactamase class A
1145	 42.06	+1	1075942..1077030	+	362	33240596	chlI	Pro1146	-	protoporphyrin IX magnesium chelatase subunit ChlI
1146	 38.46	0	1077035..1077502	+	155	33240597	ruvC	Pro1147	-	Holliday junction resolvasome endonuclease subunit
1147	 33.86	0	1077541..1078107	+	188	33240598	-	Pro1148	-	5-formyltetrahydrofolate cyclo-ligase
1148	 35.14	0	1078158..1078601	+	147	33240599	-	Pro1149	-	SufE protein
1149	 37.50	0	1078642..1079961	+	439	33240600	thrA	Pro1150	-	homoserine dehydrogenase
1150	 38.31	0	1080082..1080282	+	66	33240601	-	Pro1151	-	hypothetical protein
1151	 32.77	-1	1080330..1081931	+	533	33240602	ddpA	Pro1152	-	ABC transporter substrate-binding protein
1152	 37.84	0	1081924..1082943	+	339	33240603	dppB	Pro1153	-	ABC-type oligopeptide transport system permease
1153	 35.42	0	1082940..1084571	-	543	33240604	-	Pro1154	-	serine peptidase
1154	 34.59	0	1084544..1085818	+	424	33240605	proP	Pro1155	-	major facilitator superfamily permease
1155	 36.36	0	1085824..1086120	-	98	33240606	-	Pro1156	-	hypothetical protein
1156	 40.48	0	1086518..1087342	+	274	33240607	rbsK	Pro1157	-	ribokinase family sugar kinase
1157	 19.61	-2	1087360..1087563	+	67	33240608	-	Pro1158	-	hypothetical protein
1158	 33.33	0	1087742..1088026	-	94	33240609	-	Pro1159	-	hypothetical protein
1159	 35.38	0	1088118..1088312	-	64	33240610	-	Pro1160	-	hypothetical protein
37.01	MEAN

3.99	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.