IslandPath Analysis: Prochlorococcus marinus subsp. marinus str. CCMP1375



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.01   STD DEV: 3.99
Prochlorococcus marinus subsp. marinus str. CCMP1375, complete genome - 1..1751080
1883 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
58	 31.25	-1	64567..66531	-	654	33239510	asnB	Pro0058	-	asparagine synthetase
59	 30.21	-1	66592..68190	+	532	33239511	arnT	Pro0059	-	glycosyl transferase family protein
60	 34.27	0	68269..69663	+	464	33239512	wcaA	Pro0060	-	glycosyltransferase
61	 31.32	-1	69664..70605	+	313	33239513	-	Pro0061	-	hypothetical protein
62	 29.96	-1	70715..73054	+	779	33239514	arnT	Pro0062	-	glycosyl transferase family protein
63	 38.83	0	73141..74268	+	375	33239515	gmd	Pro0063	-	GDP-D-mannose dehydratase
64	 32.15	-1	74274..75287	+	337	33239516	wcaG	Pro0064	-	NAD dependent epimerase/dehydratase
65	 33.25	0	75660..76808	+	382	33239517	-	Pro0065	-	putative RNA methylase
66	 33.85	0	76805..77191	-	128	33239518	-	Pro0066	-	hypothetical protein
67	 39.78	0	77192..77656	-	154	33239519	-	Pro0067	-	hypothetical protein
68	 43.94	+1	77901..78032	+	43	33239520	-	Pro0068	-	hypothetical protein
69	 26.57	-2	78177..78383	+	68	33239521	-	Pro0069	-	hypothetical protein
70	 40.42	0	78441..78821	+	126	33239522	-	Pro0070	-	hypothetical protein
71	 36.88	0	78939..82493	+	1184	33239523	smc	Pro0071	-	chromosome segregation ATPase
72	 37.24	0	82558..83631	+	357	33239524	-	Pro0072	-	PRC-barrel domain-containing protein
73	 35.96	0	83662..84957	-	431	33239525	-	Pro0073	-	hypothetical protein
74	 40.81	0	85161..86510	+	449	33239526	accC	Pro0074	-	acetyl-CoA carboxylase biotin carboxylase subunit
75	 34.89	0	86523..86843	-	106	33239527	-	Pro0075	-	YGGT family membrane protein
76	 47.62	+2	86930..87097	+	55	33239528	psbX	Pro0076	-	photosystem II protein X PsbX
77	 40.79	0	87184..88242	+	352	33239529	-	Pro0077	-	hypothetical protein
78	 38.96	0	88280..88528	-	82	33239530	hli5	Pro0078	-	high light inducible protein hli5
79	 33.03	0	88537..90525	-	662	33239531	-	Pro0079	-	ABC transporter ATP-binding protein
80	 36.26	0	90732..91073	-	113	33239532	hit	Pro0080	-	HIT family hydrolase
81	 36.76	0	91268..91879	-	203	33239533	def	Pro0081	-	peptide deformylase
82	 33.84	0	91942..93900	+	652	33239534	DAP2	Pro0082	-	dipeptidyl aminopeptidase family protein
83	 32.93	-1	93897..95150	-	417	33239535	csdB	Pro0083	-	selenocysteine lyase
84	 29.80	-1	95159..96376	-	405	33239536	sufB	Pro0084	-	ABC-type transport system involved in Fe-S cluster assembly permease component
85	 32.58	-1	96384..97175	-	263	33239537	sufC	Pro0085	-	ABC-type transport system involved in Fe-S cluster assembly ATPase component
86	 33.89	0	97172..98614	-	480	33239538	sufB	Pro0086	-	cysteine desulfurase activator complex subunit SufB
87	 36.77	0	98697..99074	+	125	33239539	-	Pro0087	-	hypothetical protein
88	 39.16	0	99371..100468	+	365	33239540	-	Pro0088	-	hypothetical protein
89	 40.94	0	100490..100660	+	56	33239541	-	Pro0089	-	hypothetical protein
90	 39.06	0	100718..102376	+	552	33239542	pgm	Pro0090	-	phosphoglucomutase
91	 38.93	0	102410..103750	+	446	33239543	mGS1	Pro0091	-	recombination factor protein RarA
92	 31.35	-1	103816..104472	-	218	33239544	-	Pro0092	-	putative 4'-phosphopantetheinyl transferase family protein
93	 35.26	0	104471..104938	+	155	33239545	ccp	Pro0093	-	peroxiredoxin
94	 38.46	0	104886..105626	-	246	33239546	-	Pro0094	-	transcriptional regulator
95	 36.86	0	105629..106393	-	254	33239547	cysH	Pro0095	-	phosphoadenosine phosphosulfate reductase
96	 35.78	0	106440..107624	+	394	33239548	ndh	Pro0096	-	NADH dehydrogenase, FAD-containing subunit
97	 39.70	0	107726..109546	+	606	33239549	citT	Pro0097	-	putative sodium/sulfate transporter, DASS family
98	 37.46	0	109600..111003	+	467	33239550	trkG	Pro0098	-	putative sodium transporter, Trk family
99	 40.71	0	111000..111731	+	243	33239551	trkA	Pro0099	-	putative potassium channel, VIC family
100	 38.01	0	111732..112865	+	377	33239552	anmK	Pro0100	-	anhydro-N-acetylmuramic acid kinase
101	 42.67	+1	112874..113173	-	99	33239553	-	Pro0101	-	hypothetical protein
102	 39.34	0	113338..113703	+	121	33239554	-	Pro0102	-	hypothetical protein
103	 42.42	+1	113736..113966	+	76	33239555	-	Pro0103	-	hypothetical protein
104	 40.56	0	113950..114129	-	59	33239556	-	Pro0104	-	hypothetical protein
105	 34.33	0	114223..115932	+	569	33239557	uup	Pro0105	-	ABC transporter ATP-binding protein
106	 34.27	0	115973..117148	-	391	33239558	degQ	Pro0106	-	periplasmic trypsin-like serine protease
107	 26.55	-2	117173..117349	+	58	33239559	-	Pro0107	-	hypothetical protein
108	 38.58	0	117397..117663	+	88	33239560	-	Pro0108	-	hypothetical protein
109	 41.93	+1	117721..118104	+	127	33239561	-	Pro0109	-	hypothetical protein
110	 37.33	0	118186..118335	+	49	33239562	hli4	Pro0110	-	high light inducible protein hli4
111	 36.97	0	118373..119527	+	384	33239563	xseA	Pro0111	-	exonuclease VII, large subunit
112	 25.26	-2	119561..119845	+	94	33239564	xseB	Pro0112	-	exodeoxyribonuclease VII small subunit
113	 30.91	-1	119846..120175	-	109	33239565	-	Pro0113	-	hypothetical protein
114	 35.03	0	120179..121120	-	313	33239566	rbn	Pro0114	-	serum resistance locus BrkB-like protein
115	 34.56	0	121260..122072	-	270	33239567	-	Pro0115	-	inositol monophosphate family protein
116	 29.27	-1	122083..123708	-	541	33239568	tolC	Pro0116	-	Outer membrane efflux protein
117	 37.20	0	123683..125080	-	465	33239569	-	Pro0117	-	putative Fe-S oxidoreductase
118	 39.70	0	125392..126051	+	219	33239570	-	Pro0118	-	hypothetical protein
119	 39.72	0	126070..127728	+	552	33239571	nadB	Pro0119	-	L-aspartate oxidase
120	 34.39	0	127743..128684	-	313	33239572	-	Pro0120	-	hypothetical protein
121	 37.47	0	128876..130180	+	434	33239573	miaB	Pro0121	-	2-methylthioadenine synthetase
122	 35.48	0	130282..130374	-	30	161407961	petL	Pro0122	-	cytochrome b6-f complex subunit PetL
123	 36.87	0	130443..130838	-	131	33239575	folP	Pro0123	-	hypothetical protein
124	 21.93	-2	130998..131225	-	75	33239576	-	Pro0124	-	hypothetical protein
125	 34.69	0	131248..132423	-	391	33239577	-	Pro0125	-	hypothetical protein
126	 37.05	0	132420..133091	-	223	33239578	ribD	Pro0126	-	pyrimidine reductase
127	 37.73	0	133098..134006	-	302	33239579	-	Pro0127	-	6-pyruvoyl tetrahydropterin synthase
128	 36.82	0	134061..134633	+	190	33239580	aroK	Pro0128	-	shikimate kinase
129	 35.98	0	134614..134877	-	87	33239581	-	Pro0129	-	hypothetical protein
130	 37.05	0	134889..135614	-	241	33239582	gst	Pro0130	-	putative glutathione S-transferase
131	 35.75	0	135674..135880	+	68	33239583	-	Pro0131	-	hypothetical protein
132	 38.17	0	135883..136275	+	130	33239584	rbfA	Pro0132	-	ribosome-binding factor A
133	 38.36	0	136278..137927	+	549	33239585	cglX	Pro0133	-	Beta-glucosidase-related glycosidase
134	 34.95	0	137961..138764	+	267	33239586	hemD	Pro0134	-	putative uroporphyrinogen III synthase
135	 33.98	0	138772..139233	-	153	33239587	-	Pro0135	-	putative integral membrane protein
136	 38.88	0	139235..140695	-	486	33239588	crtQ	Pro0136	-	zeta-carotene desaturase
137	 39.90	0	140806..141201	+	131	33239589	iscA	Pro0137	-	hypothetical protein
138	 36.67	0	141244..141663	+	139	33239590	-	Pro0138	-	hypothetical protein
139	 39.48	0	141665..142867	+	400	33239591	-	Pro0139	-	hypothetical protein
140	 39.72	0	142902..143840	-	312	33239592	-	Pro0140	-	putative cell division inhibitor
141	 41.00	0	143921..144181	+	86	33239593	-	Pro0141	-	hypothetical protein
142	 33.18	0	144198..144854	-	218	33239594	cbpA	Pro0142	-	putative heat shock protein DnaJ
143	 41.38	+1	144878..145846	-	322	33239595	cysK	Pro0143	-	cysteine synthase
144	 41.67	+1	145956..146219	+	87	33239596	-	Pro0144	-	hypothetical protein
145	 38.34	0	146225..146923	+	232	33239597	cbiO	Pro0145	-	ABC-type cobalt transport system ATPase component
146	 32.30	-1	147584..147970	-	128	33239598	-	Pro0146	-	hypothetical protein
147	 34.44	0	148013..148735	-	240	33239599	-	Pro0147	-	hypothetical protein
148	 27.60	-2	148813..149457	-	214	33239600	-	Pro0148	-	hypothetical protein
149	 34.94	0	149466..150461	-	331	33239601	-	Pro0149	-	membrane protease family stomatin/prohibitin-like protein
150	 38.67	0	150619..151386	+	255	33239602	ompR	Pro0150	-	two-component response regulator
151	 29.97	-1	151418..152368	-	316	33239603	holB	Pro0151	-	DNA polymerase III subunit delta'
152	 34.69	0	152355..153017	-	220	33239604	tmk	Pro0152	-	thymidylate kinase
153	 35.61	0	153014..155338	-	774	33239605	zntA	Pro0153	-	putative P-type ATPase transporter for copper
154	 36.97	0	155480..156001	+	173	33239606	-	Pro0154	-	photosystem I assembly protein Ycf3
155	 39.25	0	156021..157406	-	461	33239607	sms	Pro0155	-	DNA repair protein RadA
156	 42.61	+1	157514..158257	+	247	33239608	ompR	Pro0156	-	two-component response regulator
157	 40.73	0	158268..159578	+	436	33239609	plsX	Pro0157	-	putative glycerol-3-phosphate acyltransferase PlsX
37.01	MEAN

3.99	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.