IslandPathversion 1.0

IslandPath Analysis: Propionibacterium acnes KPA171202



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.05 STD DEV: 3.20
Propionibacterium acnes KPA171202, complete genome - 1..2560265
2297 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
940	 60.47	0	1033805..1034563	+	252	50842436	-	PPA0952	-	succinate dehydrogenase/fumarate reductase iron-sulfur subunit
941	 65.99	+1	1034762..1036528	-	588	50842437	-	PPA0953	-	phosphoribosyltransferase
942	 61.25	0	1036576..1037811	+	411	50842438	-	PPA0954	-	NifR3 family TIM-barrel protein
943	 59.82	0	1037869..1038978	+	369	50842439	-	PPA0955	-	deoxyguanosinetriphosphate triphosphohydrolase
944	 60.17	0	1038998..1039720	-	240	50842440	-	PPA0956	-	hypothetical protein
945	 59.46	0	1039796..1041667	+	623	50842441	dnaG	PPA0957	-	DNA primase
946	 58.67	0	1041754..1042566	+	270	50842442	-	PPA0958	-	RNA polymerase sigma factor
947	 60.16	0	1042580..1043086	+	168	50842443	-	PPA0959	-	hypothetical protein
948	 61.26	0	1043400..1044380	-	326	50842444	-	PPA0960	-	putative luciferase-like monooxygenase
949	 59.69	0	1044422..1045825	-	467	50842445	-	PPA0961	-	alpha,alpha-trehalose-phosphate synthase
950	 59.58	0	1045785..1046843	+	352	50842446	-	PPA0962	-	phosphatase, putative trehalose-6-phosphatase
951	 60.47	0	1047389..1048324	+	311	50842447	-	PPA0963	-	cysteine synthase
952	 64.05	+1	1048386..1049798	-	470	50842448	-	PPA0964	-	transcriptional regulator
953	 61.97	0	1049873..1050787	+	304	50842449	-	PPA0965	-	pyridoxine biosynthesis protein
954	 62.38	0	1050789..1051394	+	201	50842450	-	PPA0966	-	glutamine amidotransferase subunit PdxT
955	 61.40	0	1051546..1052817	+	423	50842451	-	PPA0967	-	adenosylmethionine-8-amino-7-oxononanoate aminotransferase
956	 60.43	0	1052814..1053518	+	234	50842452	-	PPA0968	-	dethiobiotin synthetase
957	 58.88	0	1053515..1054876	+	453	50842453	-	PPA0969	-	putative amino acid permease
958	 54.55	-1	1054901..1055098	-	65	50842454	-	PPA0970	-	putative membrane efflux protein
959	 60.75	0	1055539..1055724	+	61	50842455	-	PPA0971	-	hypothetical protein
960	 60.57	0	1056051..1056296	-	81	50842456	-	PPA0972	-	hypothetical protein
961	 60.28	0	1056842..1057639	-	265	50842457	-	PPA0973	-	putative hydrolase
962	 62.38	0	1057639..1058571	-	310	50842458	-	PPA2378	-	hypothetical protein
963	 59.34	0	1058723..1059841	+	372	50842459	-	PPA0974	-	MoxR-like ATPase
964	 61.97	0	1059852..1060895	+	347	50842460	-	PPA0975	-	putative MoxR
965	 59.44	0	1060892..1061860	+	322	50842461	-	PPA0976	-	aerotolerance protein BatA
966	 58.20	0	1061857..1062813	+	318	50842462	-	PPA0977	-	aerotolerance protein BatA
967	 57.18	0	1062862..1063578	+	238	50842463	-	PPA0978	-	hypothetical protein
968	 61.24	0	1063656..1064153	+	165	50842464	-	PPA0979	-	hypothetical protein
969	 61.32	0	1064239..1065510	-	423	50842465	-	PPA0980	-	3-oxoacyl-[acyl-carrier-protein] synthase 1
970	 54.88	-1	1065584..1065829	-	81	50842466	acpP	PPA0982	-	acyl carrier protein
971	 62.16	0	1065912..1066910	-	332	50842467	-	PPA0983	-	3-oxoacyl-(acyl-carrier-protein) synthase III
972	 62.87	0	1066907..1067908	-	333	50842468	-	PPA0984	-	acyl-carrier-protein S-malonyltransferase
973	 60.33	0	1067968..1068882	-	304	50842469	-	PPA0985	-	2-dehydropantoate 2-reductase
974	 60.38	0	1068879..1069244	-	121	50842470	-	PPA0986	-	hypothetical protein
975	 54.50	-1	1069407..1070852	+	481	50842471	-	PPA0987	-	galactose-proton symporter
976	 61.76	0	1070881..1072122	-	413	50842472	-	PPA0988	-	hypothetical protein
977	 60.93	0	1072364..1075117	+	917	50842473	aceE	PPA0989	-	pyruvate dehydrogenase subunit E1
978	 55.12	-1	1075289..1076197	+	302	50842474	-	PPA0990	-	endo-beta-N-acetylglucosaminidase H
979	 59.26	0	1076302..1076706	+	134	50842475	-	PPA0991	-	hypothetical protein
980	 65.04	+1	1076718..1076963	-	81	50842476	-	PPA0992	-	beta-glucosidase fragment
981	 58.76	0	1077237..1077818	-	193	50842477	-	PPA0993	-	pyrazinamidase/nicotinamidase
982	 57.07	0	1077863..1078873	+	336	50842478	-	PPA0994	-	putative oxidoreductase protein
983	 58.68	0	1079025..1079600	+	191	50842479	-	PPA0995	-	pyrimidine regulatory protein PyrR
984	 56.19	-1	1079597..1080541	+	314	50842480	pyrB	PPA0997	-	aspartate carbamoyltransferase catalytic subunit
985	 64.57	+1	1080538..1081875	+	445	50842481	-	PPA0998	-	dihydroorotase
986	 60.51	0	1081872..1082960	+	362	50842482	-	PPA0999	-	carbamoyl phosphate synthase small subunit
987	 59.34	0	1082960..1086166	+	1068	50842483	carB	PPA1000	-	carbamoyl phosphate synthase large subunit
988	 60.88	0	1086166..1086960	+	264	50842484	-	PPA1001	-	dihydroorotate dehydrogenase electron transfer subunit
989	 59.63	0	1086957..1087880	+	307	50842485	-	PPA1002	-	dihydroorotate dehydrogenase B, catalytic subunit
990	 61.60	0	1087906..1088616	+	236	50842486	-	PPA1003	-	orotidine 5'-phosphate decarboxylase
991	 60.98	0	1088644..1089294	+	216	50842487	-	PPA1004	-	orotate phosphoribosyltransferase
992	 63.44	+1	1089675..1090481	-	268	50842488	-	PPA1005	-	putative fructosamine kinase
993	 60.58	0	1090492..1091937	+	481	50842489	-	PPA1006	-	radical SAM superfamily protein
994	 55.61	-1	1092046..1092660	+	204	50842490	-	PPA1007	-	phosphatidylglycerophosphate synthase
995	 60.49	0	1092657..1093142	+	161	50842491	-	PPA1008	-	putative competence-damage inducible protein
996	 56.88	0	1093244..1093519	+	91	50842492	-	PPA1009	-	transcriptional regulator
997	 59.95	0	1093621..1094424	-	267	50842493	-	PPA1010	-	putative transcriptional regulatory protein
998	 61.67	0	1094790..1094969	+	59	50842494	-	PPA1011	-	hypothetical protein
999	 58.64	0	1095280..1096326	+	348	50842495	-	PPA1012	-	RecA protein
1000	 60.08	0	1096356..1096871	+	171	50842496	recX	PPA1013	-	recombination regulator RecX
1001	 59.67	0	1096975..1098603	+	542	50842497	-	PPA1014	-	hypothetical protein
1002	 59.44	0	1098644..1099543	-	299	50842498	-	PPA1015	-	putative aldose-1-epimerase
1003	 52.53	-2	1099707..1101248	+	513	50842499	-	PPA1016	-	putative C4-dicarboxylate anaerobic carrier DcuC
1004	 57.78	0	1101309..1102793	+	494	50842500	-	PPA1017	-	MiaB family protein
1005	 59.70	0	1102944..1103144	-	66	50842501	-	PPA1018	-	hypothetical protein
1006	 58.75	0	1103263..1104222	+	319	50842502	miaA	PPA1019	-	tRNA delta(2)-isopentenylpyrophosphate transferase
1007	 60.10	0	1104227..1105048	+	273	50842503	dapF	PPA1020	-	diaminopimelate epimerase
1008	 57.16	0	1105133..1106584	+	483	50842504	-	PPA1021	-	GTP-binding protein
1009	 59.35	0	1106574..1108622	+	682	50842505	-	PPA1022	-	putative ATP-dependent helicase
1010	 58.22	0	1108732..1109406	-	224	50842506	-	PPA1023	-	LexA repressor
1011	 62.03	0	1109551..1110024	+	157	50842507	-	PPA1024	-	hypothetical protein
1012	 57.06	0	1110246..1110755	+	169	50842508	-	PPA1025	-	transcriptional regulator NrdR
1013	 57.13	0	1110837..1113689	+	950	50842509	-	PPA1026	-	vitamin B12-dependent ribonucleotide reductase
1014	 57.98	0	1113850..1114782	+	310	50842510	-	PPA1027	-	hypothetical protein
1015	 62.22	0	1114866..1115720	+	284	50842511	-	PPA1028	-	putative universal stress protein UspA
1016	 61.33	0	1116155..1120240	+	1361	50842512	-	PPA1029	-	ATP-dependent helicase HrpA
1017	 61.32	0	1120404..1121300	+	298	50842513	-	PPA1030	-	acyl-CoA thioesterase II
1018	 62.62	0	1121357..1122295	-	312	50842514	-	PPA1031	-	RNA polymerase principal sigma factor HrdD
1019	 58.91	0	1122642..1124162	+	506	50842515	-	PPA1032	-	RNA polymerase sigma factor
1020	 60.06	0	1124235..1126808	-	857	50842516	-	PPA1033	-	beta-mannosidase
1021	 60.10	0	1126914..1127522	+	202	50842517	-	PPA1034	-	transcriptional regulator
1022	 60.53	0	1127466..1128752	-	428	50842518	-	PPA1035	-	putative lipase
1023	 59.04	0	1128805..1129053	+	82	50842519	-	PPA1036	-	hypothetical protein
1024	 60.54	0	1129193..1129975	+	260	50842520	-	PPA1037	-	hypothetical protein
1025	 66.67	+2	1129953..1130246	+	97	50842521	-	PPA1038	-	hypothetical protein
1026	 60.31	0	1130324..1131598	+	424	50842522	-	PPA1039	-	putative aminooxidase
1027	 59.79	0	1131717..1132298	+	193	50842523	-	PPA1040	-	hypothetical protein
1028	 59.66	0	1132798..1134894	+	698	50842524	-	PPA1042	-	DNA topoisomerase IV subunit B
1029	 59.32	0	1135240..1136559	+	439	50842525	-	PPA1043	-	anaerobic C4-dicarboxylate transporter
1030	 58.04	0	1136612..1137955	+	447	50842526	-	PPA1044	-	major facilitator superfamily permease
1031	 60.99	0	1138134..1140668	-	844	50842527	-	PPA1045	-	DNA topoisomerase IV subunit A
1032	 59.63	0	1140732..1141826	-	364	50842528	-	PPA1046	-	hypothetical protein
1033	 59.46	0	1141873..1142469	+	198	50842529	-	PPA1047	-	hypothetical protein
1034	 60.20	0	1142466..1143593	+	375	50842530	-	PPA1048	-	type I phosphodiesterase / nucleotide pyrophosphatase
1035	 59.29	0	1143596..1144246	+	216	50842531	-	PPA1049	-	thymidine kinase
1036	 63.61	+1	1144304..1145383	-	359	50842532	-	PPA1050	-	hypothetical protein
1037	 56.57	-1	1145592..1145888	+	98	50842533	-	PPA1051	-	hypothetical protein
1038	 56.00	-1	1145958..1146257	-	99	50842534	-	PPA1052	-	hypothetical protein
1039	 58.38	0	1146299..1146829	+	176	50842535	-	PPA1053	-	hypothetical protein
60.05	MEAN

3.20	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.