IslandPathversion 1.0

IslandPath Analysis: Propionibacterium acnes KPA171202



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.05 STD DEV: 3.20
Propionibacterium acnes KPA171202, complete genome - 1..2560265
2297 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
908	 60.70	0	1002250..1002651	-	133	50842404	-	PPA0920	-	hypothetical protein
909	 61.92	0	1002813..1004963	-	716	50842405	-	PPA0921	-	ATP-dependent DNA helicase
910	 60.02	0	1005046..1006263	-	405	50842406	-	PPA0922	-	putative UDP-N-acetylglucosamine pyrophosphorylase
911	 62.38	0	1006306..1007145	-	279	50842407	-	PPA0923	-	hypothetical protein
912	 61.27	0	1007244..1008485	+	413	50842408	-	PPA0924	-	queuine/archaeosine tRNA-ribosyltransferase
913	 62.37	0	1008533..1009882	+	449	50842409	-	PPA0925	-	putative two-component system sensor kinase
914	 63.17	0	1009882..1010538	+	218	50842410	-	PPA0926	-	putative two-component response regulator
915	 62.00	0	1010623..1011543	+	306	50842411	-	PPA0927	-	ABC transporter, ATP-binding protein
916	 57.94	0	1011540..1012307	+	255	50842412	-	PPA0928	-	putative ABC transporter
917	 58.39	0	1012329..1012751	+	140	50842413	-	PPA0929	-	putative ABC transporter permease protein
918	 57.41	0	1012748..1012963	+	71	50842414	-	PPA0930	-	hypothetical protein
919	 57.88	0	1012933..1013751	-	272	50842415	-	PPA0931	-	hypothetical protein
920	 60.71	0	1013723..1014646	+	307	50842416	-	PPA0932	-	proline iminopeptidase
921	 47.10	-2	1015023..1015298	-	91	50842417	-	PPA0933	-	hypothetical protein
922	 58.51	0	1015295..1016017	-	240	50842418	-	PPA0934	-	hypothetical protein
923	 60.09	0	1016060..1016485	-	141	50842419	-	PPA0935	-	hypothetical protein
924	 59.12	0	1016522..1017541	+	339	50842420	-	PPA0936	-	PhoH-like protein
925	 58.33	0	1017538..1018005	+	155	50842421	-	PPA0937	-	putative metalloprotease
926	 58.74	0	1018002..1019300	+	432	50842422	-	PPA0938	-	putative hemolysin
927	 58.75	0	1019293..1020315	+	340	50842423	era	PPA0939	-	GTP-binding protein Era
928	 62.51	0	1020344..1021834	-	496	50842424	-	PPA0940	-	putative metal-dependent hydrolase
929	 59.10	0	1022078..1023781	+	567	161621797	-	PPA0941	-	2-isopropylmalate synthase
930	 61.09	0	1023790..1024596	-	268	50842426	-	PPA0942	-	undecaprenyl pyrophosphate synthetase
931	 57.66	0	1024698..1025363	-	221	50842427	-	PPA0943	-	hypothetical protein
932	 61.27	0	1025484..1026224	+	246	50842428	recO	PPA0944	-	DNA repair protein RecO
933	 56.79	-1	1026322..1027485	-	387	50842429	-	PPA0945	-	putative histidine kinase
934	 56.77	-1	1027539..1027730	-	63	50842430	-	PPA0946	-	hypothetical protein
935	 55.21	-1	1028068..1028739	+	223	50842431	-	PPA0947	-	two-component system response regulator
936	 57.00	0	1028740..1029153	-	137	50842432	-	PPA0948	-	metal uptake regulation protein
937	 57.59	0	1029249..1030769	+	506	50842433	-	PPA0949	-	glycyl-tRNA synthetase
938	 56.42	-1	1030909..1031679	+	256	50842434	-	PPA0950	-	putative succinate dehydrogenase subunit C
939	 61.46	0	1031676..1033808	+	710	50842435	sdhA	PPA0951	-	succinate dehydrogenase flavoprotein subunit
940	 60.47	0	1033805..1034563	+	252	50842436	-	PPA0952	-	succinate dehydrogenase/fumarate reductase iron-sulfur subunit
941	 65.99	+1	1034762..1036528	-	588	50842437	-	PPA0953	-	phosphoribosyltransferase
942	 61.25	0	1036576..1037811	+	411	50842438	-	PPA0954	-	NifR3 family TIM-barrel protein
943	 59.82	0	1037869..1038978	+	369	50842439	-	PPA0955	-	deoxyguanosinetriphosphate triphosphohydrolase
944	 60.17	0	1038998..1039720	-	240	50842440	-	PPA0956	-	hypothetical protein
945	 59.46	0	1039796..1041667	+	623	50842441	dnaG	PPA0957	-	DNA primase
946	 58.67	0	1041754..1042566	+	270	50842442	-	PPA0958	-	RNA polymerase sigma factor
947	 60.16	0	1042580..1043086	+	168	50842443	-	PPA0959	-	hypothetical protein
948	 61.26	0	1043400..1044380	-	326	50842444	-	PPA0960	-	putative luciferase-like monooxygenase
949	 59.69	0	1044422..1045825	-	467	50842445	-	PPA0961	-	alpha,alpha-trehalose-phosphate synthase
950	 59.58	0	1045785..1046843	+	352	50842446	-	PPA0962	-	phosphatase, putative trehalose-6-phosphatase
951	 60.47	0	1047389..1048324	+	311	50842447	-	PPA0963	-	cysteine synthase
952	 64.05	+1	1048386..1049798	-	470	50842448	-	PPA0964	-	transcriptional regulator
953	 61.97	0	1049873..1050787	+	304	50842449	-	PPA0965	-	pyridoxine biosynthesis protein
954	 62.38	0	1050789..1051394	+	201	50842450	-	PPA0966	-	glutamine amidotransferase subunit PdxT
955	 61.40	0	1051546..1052817	+	423	50842451	-	PPA0967	-	adenosylmethionine-8-amino-7-oxononanoate aminotransferase
956	 60.43	0	1052814..1053518	+	234	50842452	-	PPA0968	-	dethiobiotin synthetase
957	 58.88	0	1053515..1054876	+	453	50842453	-	PPA0969	-	putative amino acid permease
958	 54.55	-1	1054901..1055098	-	65	50842454	-	PPA0970	-	putative membrane efflux protein
959	 60.75	0	1055539..1055724	+	61	50842455	-	PPA0971	-	hypothetical protein
960	 60.57	0	1056051..1056296	-	81	50842456	-	PPA0972	-	hypothetical protein
961	 60.28	0	1056842..1057639	-	265	50842457	-	PPA0973	-	putative hydrolase
962	 62.38	0	1057639..1058571	-	310	50842458	-	PPA2378	-	hypothetical protein
963	 59.34	0	1058723..1059841	+	372	50842459	-	PPA0974	-	MoxR-like ATPase
964	 61.97	0	1059852..1060895	+	347	50842460	-	PPA0975	-	putative MoxR
965	 59.44	0	1060892..1061860	+	322	50842461	-	PPA0976	-	aerotolerance protein BatA
966	 58.20	0	1061857..1062813	+	318	50842462	-	PPA0977	-	aerotolerance protein BatA
967	 57.18	0	1062862..1063578	+	238	50842463	-	PPA0978	-	hypothetical protein
968	 61.24	0	1063656..1064153	+	165	50842464	-	PPA0979	-	hypothetical protein
969	 61.32	0	1064239..1065510	-	423	50842465	-	PPA0980	-	3-oxoacyl-[acyl-carrier-protein] synthase 1
970	 54.88	-1	1065584..1065829	-	81	50842466	acpP	PPA0982	-	acyl carrier protein
971	 62.16	0	1065912..1066910	-	332	50842467	-	PPA0983	-	3-oxoacyl-(acyl-carrier-protein) synthase III
972	 62.87	0	1066907..1067908	-	333	50842468	-	PPA0984	-	acyl-carrier-protein S-malonyltransferase
973	 60.33	0	1067968..1068882	-	304	50842469	-	PPA0985	-	2-dehydropantoate 2-reductase
974	 60.38	0	1068879..1069244	-	121	50842470	-	PPA0986	-	hypothetical protein
975	 54.50	-1	1069407..1070852	+	481	50842471	-	PPA0987	-	galactose-proton symporter
976	 61.76	0	1070881..1072122	-	413	50842472	-	PPA0988	-	hypothetical protein
977	 60.93	0	1072364..1075117	+	917	50842473	aceE	PPA0989	-	pyruvate dehydrogenase subunit E1
978	 55.12	-1	1075289..1076197	+	302	50842474	-	PPA0990	-	endo-beta-N-acetylglucosaminidase H
979	 59.26	0	1076302..1076706	+	134	50842475	-	PPA0991	-	hypothetical protein
980	 65.04	+1	1076718..1076963	-	81	50842476	-	PPA0992	-	beta-glucosidase fragment
981	 58.76	0	1077237..1077818	-	193	50842477	-	PPA0993	-	pyrazinamidase/nicotinamidase
982	 57.07	0	1077863..1078873	+	336	50842478	-	PPA0994	-	putative oxidoreductase protein
983	 58.68	0	1079025..1079600	+	191	50842479	-	PPA0995	-	pyrimidine regulatory protein PyrR
984	 56.19	-1	1079597..1080541	+	314	50842480	pyrB	PPA0997	-	aspartate carbamoyltransferase catalytic subunit
985	 64.57	+1	1080538..1081875	+	445	50842481	-	PPA0998	-	dihydroorotase
986	 60.51	0	1081872..1082960	+	362	50842482	-	PPA0999	-	carbamoyl phosphate synthase small subunit
987	 59.34	0	1082960..1086166	+	1068	50842483	carB	PPA1000	-	carbamoyl phosphate synthase large subunit
988	 60.88	0	1086166..1086960	+	264	50842484	-	PPA1001	-	dihydroorotate dehydrogenase electron transfer subunit
989	 59.63	0	1086957..1087880	+	307	50842485	-	PPA1002	-	dihydroorotate dehydrogenase B, catalytic subunit
990	 61.60	0	1087906..1088616	+	236	50842486	-	PPA1003	-	orotidine 5'-phosphate decarboxylase
991	 60.98	0	1088644..1089294	+	216	50842487	-	PPA1004	-	orotate phosphoribosyltransferase
992	 63.44	+1	1089675..1090481	-	268	50842488	-	PPA1005	-	putative fructosamine kinase
993	 60.58	0	1090492..1091937	+	481	50842489	-	PPA1006	-	radical SAM superfamily protein
994	 55.61	-1	1092046..1092660	+	204	50842490	-	PPA1007	-	phosphatidylglycerophosphate synthase
995	 60.49	0	1092657..1093142	+	161	50842491	-	PPA1008	-	putative competence-damage inducible protein
996	 56.88	0	1093244..1093519	+	91	50842492	-	PPA1009	-	transcriptional regulator
997	 59.95	0	1093621..1094424	-	267	50842493	-	PPA1010	-	putative transcriptional regulatory protein
998	 61.67	0	1094790..1094969	+	59	50842494	-	PPA1011	-	hypothetical protein
999	 58.64	0	1095280..1096326	+	348	50842495	-	PPA1012	-	RecA protein
1000	 60.08	0	1096356..1096871	+	171	50842496	recX	PPA1013	-	recombination regulator RecX
1001	 59.67	0	1096975..1098603	+	542	50842497	-	PPA1014	-	hypothetical protein
1002	 59.44	0	1098644..1099543	-	299	50842498	-	PPA1015	-	putative aldose-1-epimerase
1003	 52.53	-2	1099707..1101248	+	513	50842499	-	PPA1016	-	putative C4-dicarboxylate anaerobic carrier DcuC
1004	 57.78	0	1101309..1102793	+	494	50842500	-	PPA1017	-	MiaB family protein
1005	 59.70	0	1102944..1103144	-	66	50842501	-	PPA1018	-	hypothetical protein
1006	 58.75	0	1103263..1104222	+	319	50842502	miaA	PPA1019	-	tRNA delta(2)-isopentenylpyrophosphate transferase
1007	 60.10	0	1104227..1105048	+	273	50842503	dapF	PPA1020	-	diaminopimelate epimerase
60.05	MEAN

3.20	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.