IslandPath Analysis: Propionibacterium acnes KPA171202



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 60.05   STD DEV: 3.20
Propionibacterium acnes KPA171202, complete genome - 1..2560265
2297 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
46	 61.19	0	50197..50871	-	224	50841542	-	PPA0052	-	hypothetical protein
47	 59.95	0	51068..53539	-	823	50841543	-	PPA0053	-	ABC transporter associated permease
48	 60.97	0	53539..54573	-	344	50841544	-	PPA0054	-	ABC transporter ATP-binding protein
49	 60.43	0	54681..55337	-	218	50841545	-	PPA0055	-	two-component response regulator
50	 55.23	-1	55356..55967	-	203	50841546	-	PPA0056	-	hypothetical protein
51	 57.64	0	56040..56870	-	276	50841547	-	PPA0057	-	sugar transport permease BglB
52	 54.96	-1	56867..57763	-	298	50841548	-	PPA0058	-	transport permease
53	 61.38	0	57848..59152	-	434	50841549	-	PPA0059	-	sugar-binding protein
54	 55.21	-1	59132..59323	+	63	50841550	-	PPA2395	-	hypothetical protein
55	 61.14	0	59565..60251	+	228	50841551	-	PPA0060	-	DeoR family transcriptional regulator
56	 63.64	+1	60248..61636	+	462	50841552	-	PPA0061	-	putative glucosidase
57	 63.69	+1	61629..64757	+	1042	50841553	-	PPA0062	-	glycosyl hydrolase
58	 66.67	+2	64754..65809	+	351	50841554	-	PPA0063	-	hypothetical protein
59	 63.88	+1	65803..66447	+	214	50841555	-	PPA0064	-	putative hydrolase
60	 63.50	+1	66444..67739	+	431	50841556	-	PPA0065	-	hypothetical protein
61	 64.39	+1	67723..69261	-	512	50841557	-	PPA0066	-	glycosyl hydrolase
62	 64.21	+1	69367..70302	+	311	50841558	-	PPA0067	-	putative carbohydrate kinase
63	 63.97	+1	70321..71691	-	456	50841559	-	PPA0068	-	putative two component sensor kinase
64	 59.09	0	71871..72860	+	329	50841560	-	PPA0069	-	UDP-glucose 4-epimerase
65	 61.52	0	72933..73748	-	271	50841561	-	PPA0070	-	transcriptional regulator
66	 62.82	0	73685..76414	+	909	50841562	-	PPA0071	-	putative membrane transport protein
67	 64.77	+1	76411..78780	+	789	50841563	-	PPA0072	-	membrane associated protein
68	 61.76	0	78966..80411	-	481	50841564	-	PPA0073	-	hypothetical protein
69	 61.81	0	80414..81175	-	253	50841565	-	PPA0074	-	ABC transporter, ATP-binding protein
70	 58.06	0	81438..82250	+	270	50841566	-	PPA0075	-	hypothetical protein
71	 49.36	-2	82471..83481	+	336	50841567	-	PPA0076	-	periplasmic binding protein
72	 54.94	-1	83628..84650	+	340	50841568	-	PPA0077	-	ABC transporter
73	 53.65	-2	84643..85410	+	255	50841569	-	PPA0078	-	permease
74	 61.52	0	85493..86950	+	485	50841570	-	PPA0079	-	aldehyde dehydrogenase
75	 63.95	+1	86995..88281	+	428	50841571	-	PPA0080	-	chloride channel protein
76	 58.39	0	88336..90702	+	788	50841572	-	PPA0081	-	carbohydrate phosphorylase
77	 65.25	+1	91144..91779	-	211	50841573	-	PPA0082	-	hypothetical protein
78	 63.28	+1	91967..94183	-	738	50841574	-	PPA0083	-	hypothetical protein
79	 63.45	+1	94313..95524	-	403	50841575	-	PPA0084	-	ROK family transcriptional regulator
80	 58.71	0	95889..97232	+	447	50841576	-	PPA0085	-	periplasmic protein
81	 56.52	-1	97276..98211	+	311	50841577	-	PPA0086	-	putative permease protein
82	 59.86	0	98211..99092	+	293	50841578	-	PPA0087	-	permease protein
83	 65.95	+1	99230..100351	+	373	50841579	-	PPA0088	-	putative transcriptional regulator
84	 64.70	+1	100341..102530	+	729	50841580	-	PPA0089	-	glycosyl hydrolase family protein
85	 61.21	0	102809..104017	+	402	50841581	pfkA	PPA0090	-	6-phosphofructokinase
86	 65.12	+1	104055..104636	-	193	50841582	-	PPA0091	-	putative regulatory protein
87	 62.62	0	104633..107374	-	913	50841583	-	PPA0092	-	hypothetical protein
88	 64.81	+1	107367..108500	-	377	50841584	-	PPA0093	-	hypothetical protein
89	 53.84	-1	108930..110402	+	490	50841585	aspA	PPA0094	-	aspartate ammonia-lyase
90	 58.12	0	110409..111707	+	432	50841586	-	PPA0095	-	anaerobic C4-dicarboxylate transporter
91	 57.73	0	111808..112098	-	96	50841587	-	PPA0096	-	hypothetical protein
92	 59.37	0	112227..113678	+	483	50841588	-	PPA0097	-	catalase
93	 66.67	+2	113716..115461	-	581	50841589	-	PPA0098	-	ABC transporter
94	 67.12	+2	115458..117224	-	588	50841590	-	PPA0099	-	ABC transporter
95	 65.15	+1	117221..118207	-	328	50841591	-	PPA0100	-	magnesium-chelatase subunit ChlI
96	 66.82	+2	118209..120173	-	654	50841592	-	PPA0101	-	magnesium-chelatase 67 kDa subunit
97	 65.52	+1	120173..124195	-	1340	50841593	-	PPA0102	-	cobalamin biosynthesis protein CobN
98	 66.85	+2	124075..125169	-	364	50841594	-	PPA0103	-	radical SAM superfamily protein
99	 67.47	+2	125166..126167	-	333	50841595	-	PPA0104	-	ABC transporter
100	 65.18	+1	126164..127303	-	379	50841596	-	PPA0105	-	transporter (putative iron (III) permease)
101	 62.17	0	127386..128630	-	414	50841597	-	PPA0106	-	periplasmic-binding protein of ABC transporter
102	 62.17	0	128687..129955	-	422	50841598	-	PPA0107	-	periplasmic-binding protein
103	 65.63	+1	130239..131012	-	257	50841599	-	PPA0108	-	hypothetical protein
104	 59.10	0	131052..132836	-	594	50841600	-	PPA0109	-	myosin-crossreactive antigen
105	 64.15	+1	132955..134664	+	569	50841601	-	PPA0110	-	thiamine-phosphate pyrophosphorylase
106	 65.80	+1	134788..135018	+	76	50841602	-	PPA0111	-	hypothetical protein
107	 65.90	+1	135027..135680	+	217	50841603	thiE	PPA0112	-	thiamine-phosphate pyrophosphorylase
108	 62.60	0	135938..136897	-	319	50841604	-	PPA0113	-	hypothetical protein
109	 62.72	0	137230..137457	+	75	50841605	-	PPA0114	-	hypothetical protein
110	 61.34	0	137543..139213	+	556	50841606	-	PPA0115	-	potassium-transporting ATPase subunit A
111	 62.74	0	139216..141330	+	704	50841607	-	PPA0116	-	potassium-transporting ATPase B chain
112	 61.72	0	141343..141948	+	201	50841608	-	PPA0117	-	potassium-transporting ATPase C chain
113	 64.26	+1	141989..144481	+	830	50841609	-	PPA0118	-	two-component sensor, KdpD
114	 60.53	0	144478..145161	+	227	50841610	-	PPA0119	-	two-component response regulator, KdpE
115	 54.67	-1	145165..145689	+	174	50841611	-	PPA0120	-	hypothetical protein
116	 55.56	-1	145752..145958	+	68	50841612	-	PPA0121	-	hypothetical protein
117	 65.57	+1	146394..147767	-	457	50841613	-	PPA0122	-	M16 family peptidase
118	 63.79	+1	149143..149664	+	173	50841614	-	PPA0125	-	hypothetical protein
119	 59.80	0	149657..152002	+	781	50841615	-	PPA0126	-	putative penicillin-binding protein
120	 61.69	0	152012..153559	+	515	50841616	-	PPA0127	-	membrane spanning protein
121	 61.31	0	153556..154731	+	391	50841617	-	PPA0128	-	membrane spanning protein
122	 62.33	0	154728..156065	+	445	50841618	-	PPA0129	-	hypothetical protein
123	 61.44	0	156026..157288	-	420	50841619	-	PPA0130	-	putative glycosyl transferase
124	 61.97	0	157556..158683	+	375	50841620	-	PPA0131	-	putative glycosyl transferase
125	 60.70	0	158680..160002	+	440	50841621	-	PPA0132	-	hypothetical protein
126	 64.22	+1	159976..160752	-	258	50841622	-	PPA0133	-	hypothetical protein
127	 62.78	0	160926..161543	+	205	50841623	-	PPA0134	-	putative acetyltransferase
128	 62.08	0	161627..162739	+	370	50841624	-	PPA0135	-	aspartate aminotransferase
129	 62.94	0	162739..163731	+	330	50841625	-	PPA0136	-	NAD-dependent dehydrogenase
130	 58.28	0	163833..165215	+	460	50841626	-	PPA0137	-	hypothetical protein
131	 59.32	0	165419..166996	+	525	50841627	-	PPA0138	-	dipeptide/tripeptide permease
132	 62.39	0	167045..168424	+	459	50841628	-	PPA0139	-	reductase, ferredoxin
133	 61.55	0	168440..169240	+	266	50841629	-	PPA0140	-	putative ketoacyl reductase
134	 62.79	0	169304..169561	-	85	50841630	-	PPA0141	-	hypothetical protein
135	 63.93	+1	169597..171609	-	670	50841631	-	PPA0142	-	phosphotransferase system
136	 65.72	+1	171619..172569	-	316	50841632	-	PPA0143	-	putative phosphofructokinase
137	 60.37	0	172897..173658	-	253	50841633	-	PPA0144	-	DeoR family transcriptional regulator
138	 61.82	0	173823..175121	+	432	50841634	-	PPA0145	-	putative UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase
139	 61.75	0	175105..176364	+	419	50841635	-	PPA0146	-	hypothetical protein
140	 59.23	0	176483..177598	+	371	50841636	-	PPA0147	-	putative glycosyl transferase
141	 64.25	+1	177696..178769	+	357	50841637	-	PPA0148	-	putative UDP-N-acetylglucosamine 2-epimerase
142	 62.75	0	178769..179890	+	373	50841638	-	PPA0149	-	putative glycosyl transferase group 1
143	 58.87	0	180035..181060	+	341	50841639	-	PPA0150	-	hypothetical protein
144	 59.60	0	181406..181702	-	98	50841640	-	PPA0151	-	hypothetical protein
145	 61.82	0	181699..183081	-	460	50841641	-	PPA0152	-	putative NADH dehydrogenase
60.05	MEAN

3.20	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.