IslandPath Analysis: Propionibacterium acnes KPA171202



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 60.05   STD DEV: 3.20
Propionibacterium acnes KPA171202, complete genome - 1..2560265
2297 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
783	 57.14	0	874573..875370	-	265	50842279	-	PPA0792	-	iron(III) dicitrate transport system permease protein FecE
784	 57.20	0	875384..876196	-	270	50842280	-	PPA0793	-	iron(III) dicitrate transport system permease protein
785	 48.72	-2	876424..877203	-	259	50842281	-	PPA0794	-	periplasmic binding protein
786	 51.67	-2	877356..877595	+	79	50842282	-	PPA2406	-	hypothetical protein
787	 59.42	0	877803..878078	+	91	50842283	-	PPA0795	-	hypothetical protein
788	 58.33	0	878164..878439	-	91	50842284	-	PPA0796	-	ABC transporter ATP-binding protein
789	 59.57	0	878530..878811	-	93	50842285	-	PPA0797	-	ABC transporter ATP-binding protein
790	 59.61	0	878852..879361	-	169	50842286	-	PPA0798	-	putative permease
791	 59.38	0	879385..879864	-	159	50842287	-	PPA0799	-	hypothetical protein
792	 56.56	-1	879902..880663	-	253	50842288	-	PPA0800	-	hypothetical protein
793	 57.80	0	880966..881247	-	93	50842289	-	PPA0802	-	hypothetical protein
794	 58.12	0	881422..883527	+	701	50842290	-	PPA0803	-	excinuclease ABC subunit B
795	 56.26	-1	883718..884707	+	329	50842291	-	PPA0804	-	TerC family membrane protein
796	 58.90	0	884716..885372	-	218	50842292	-	PPA0805	-	Zn-dependent hydrolase
797	 63.44	+1	885418..886161	-	247	50842293	-	PPA0806	-	mycothiol-dependent maleylpyruvate isomerase
798	 60.10	0	886303..889272	+	989	50842294	uvrA	PPA0807	-	excinuclease ABC subunit A
799	 61.27	0	889287..889694	-	135	50842295	-	PPA0808	-	Rieske iron-sulfur protein
800	 60.51	0	889710..890456	-	248	50842296	-	PPA0809	-	putative phosphoglycerate mutase/fructose-2,6-bisphosphatase
801	 56.01	-1	890633..891796	+	387	50842297	-	PPA0810	-	hypothetical protein
802	 56.35	-1	891905..892282	+	125	50842298	-	PPA0811	-	hypothetical protein
803	 59.10	0	892433..894493	+	686	50842299	uvrC	PPA0812	-	excinuclease ABC subunit C
804	 60.50	0	894512..895387	+	291	50842300	-	PPA0813	-	hypothetical protein
805	 60.27	0	895384..896352	+	322	50842301	-	PPA0814	-	hypothetical protein
806	 61.52	0	896409..897398	+	329	50842302	-	PPA0815	-	hypothetical protein
807	 61.01	0	897632..898639	+	335	50842303	-	PPA0816	-	glyceraldehyde-3-phosphate dehydrogenase
808	 60.46	0	898762..899970	+	402	50842304	pgk	PPA0817	-	phosphoglycerate kinase
809	 60.90	0	899970..900749	+	259	50842305	tpiA	PPA0818	-	triosephosphate isomerase
810	 57.00	0	900850..901149	+	99	50842306	secG	PPA0819	-	preprotein translocase subunit SecG
811	 63.87	+1	901267..901623	+	118	50842307	-	PPA0820	-	electron transport protein
812	 60.44	0	901620..903065	+	481	50842308	-	PPA0821	-	folylpolyglutamate synthase
813	 57.62	0	903062..903448	+	128	50842309	-	PPA0822	-	hypothetical protein
814	 58.28	0	903470..903898	+	142	50842310	-	PPA0823	-	nucleoside diphosphate kinase
815	 58.12	0	903944..905896	+	650	50842311	-	PPA0824	-	Fe-S oxidoreductase family protein 2
816	 61.63	0	905899..906633	+	244	50842312	-	PPA0825	-	hypothetical protein
817	 60.84	0	906906..909530	+	874	50842313	-	PPA0826	-	putative ribonuclease
818	 60.84	0	909691..909999	+	102	50842314	rplU	PPA0827	-	50S ribosomal protein L21
819	 63.33	+1	910011..910280	+	89	50842315	rpmA	PPA0829	-	50S ribosomal protein L27
820	 65.00	+1	910531..911130	+	199	50842316	-	PPA0830	-	hypothetical protein
821	 61.08	0	911231..911839	+	202	50842317	-	PPA0831	-	TetR family transcriptional regulator
822	 60.15	0	911934..913697	+	587	50842318	-	PPA0832	-	major facilitator superfamily permease
823	 62.12	0	913800..915317	+	505	50842319	obgE	PPA0833	-	GTPase ObgE
824	 62.86	0	915250..916485	+	411	50842320	-	PPA0834	-	gamma-glutamyl kinase
825	 60.02	0	916534..917781	+	415	50842321	-	PPA0835	-	gamma-glutamyl phosphate reductase
826	 60.37	0	917747..918619	+	290	50842322	nadD	PPA0836	-	nicotinic acid mononucleotide adenylyltransferase
827	 57.78	0	918616..919020	+	134	50842323	-	PPA0837	-	hypothetical protein
828	 61.39	0	919101..919688	+	195	50842324	-	PPA0838	-	phosphoglycerate mutase/fructose-2,6-bisphosphatase
829	 67.95	+2	919867..921351	-	494	50842325	-	PPA0839	-	putative N-acetylmuramoyl-L-alanine amidase
830	 65.05	+1	921750..922058	+	102	50842326	-	PPA0840	-	hypothetical protein
831	 68.97	+2	922028..922375	+	115	50842327	-	PPA0841	-	hypothetical protein
832	 69.20	+2	922490..922726	+	78	50842328	-	PPA0842	-	hypothetical protein
833	 68.69	+2	923204..923599	-	131	50842329	-	PPA0843	-	ABC transporter ATP-binding protein fragment
834	 66.17	+1	923606..924205	-	199	50842330	-	PPA0844	-	ABC transporter ATP-binding protein fragment
835	 64.98	+1	924060..924593	-	177	50842331	-	PPA0845	-	ABC transporter ATP-binding protein fragment
836	 64.05	+1	924721..925026	+	101	50842332	-	PPA0846	-	conjugal transfer protein (TraA-like protein) fragment
837	 63.70	+1	924900..925169	+	89	50842333	-	PPA0847	-	conjugal transfer protein (TraA-like protein) fragment
838	 68.00	+2	925182..925556	+	124	50842334	-	PPA0848	-	conjugal transfer protein (TraA-like protein) fragment
839	 67.97	+2	925604..927295	+	563	50842335	-	PPA0849	-	transfer protein homolog TraA
840	 66.27	+1	927480..927977	-	165	50842336	-	PPA0850	-	putative DNA processing Smf-family protein
841	 59.95	0	928266..929873	+	535	50842337	-	PPA0851	-	hypothetical protein
842	 56.60	-1	929874..931562	+	562	50842338	-	PPA0852	-	putative ATP-dependent DNA helicase PcrA
843	 47.18	-2	932989..933183	-	64	50842339	-	PPA0853	-	hypothetical protein
844	 47.77	-2	933340..933630	-	96	50842340	-	PPA0854	-	hypothetical protein
845	 48.26	-2	933712..933912	+	66	50842341	-	PPA0855	-	hypothetical protein
846	 50.00	-2	934056..934355	-	99	50842342	-	PPA0856	-	hypothetical protein
847	 65.96	+1	935053..935337	+	94	50842343	-	PPA2354	-	putative transposase
848	 61.14	0	935472..935996	+	174	50842344	-	PPA0858	-	putative transposase subunit
849	 51.01	-2	936198..938810	+	870	50842345	-	PPA0859	-	putative lanthionine biosynthesis protein
850	 55.56	-1	938791..939744	+	317	50842346	-	PPA0860	-	putative lanthionine biosynthesis protein
851	 51.25	-2	939741..940823	+	360	50842347	-	PPA0861	-	hypothetical protein
852	 53.26	-2	940823..942142	+	439	50842348	-	PPA0862	-	hypothetical protein
853	 54.65	-1	942173..942763	+	196	50842349	-	PPA0863	-	hypothetical protein
854	 52.90	-2	942787..944355	+	522	50842350	-	PPA0864	-	hypothetical protein
855	 53.84	-1	944352..945068	+	238	50842351	-	PPA0865	-	hypothetical protein
856	 51.22	-2	945258..945503	+	81	50842352	-	PPA0866	-	hypothetical protein
857	 48.72	-2	946094..946366	-	90	50842353	-	PPA0867	-	hypothetical protein
858	 56.49	-1	946715..946999	-	94	50842354	-	PPA2400	-	hypothetical protein
859	 65.96	+1	947043..947327	-	94	50842355	-	PPA2355	-	hypothetical protein
860	 54.44	-1	947633..948139	-	168	50842356	-	PPA0869	-	transcriptional regulator
861	 58.97	0	948169..948480	-	103	50842357	-	PPA0870	-	hypothetical protein
862	 51.11	-2	948499..948768	-	89	50842358	-	PPA0871	-	hypothetical protein
863	 53.97	-1	948738..948926	-	62	50842359	-	PPA0873	-	hypothetical protein
864	 56.42	-1	949031..949723	-	230	50842360	-	PPA0874	-	hypothetical protein
865	 58.32	0	949848..951236	+	462	50842361	-	PPA0875	-	GntR family regulatory protein
866	 62.08	0	951486..951725	+	79	50842362	-	PPA0876	-	putative transposase subunit
867	 56.45	-1	952257..954596	-	779	50842363	-	PPA0877	-	UvrA-like ABC transporter
868	 53.15	-2	954589..955017	-	142	50842364	-	PPA2399	-	transcriptional repressor, MarR family
869	 60.74	0	955443..956387	-	314	50842365	-	PPA0878	-	SorC family transcriptional regulator
870	 59.92	0	956567..957559	+	330	50842366	-	PPA0879	-	putative phosphotriesterase
871	 62.39	0	957565..958218	+	217	50842367	ulaD	PPA0880	-	3-keto-L-gulonate-6-phosphate decarboxylase
872	 61.60	0	958215..959102	+	295	50842368	-	PPA0881	-	L-xylulose 5-phosphate 3-epimerase
873	 59.04	0	959190..959858	+	222	50842369	-	PPA0882	-	L-ribulose-5-phosphate 4-epimerase
874	 59.62	0	959855..960805	+	316	50842370	-	PPA0883	-	2-keto-3-deoxygluconate kinase
875	 56.73	-1	960840..962198	+	452	50842371	-	PPA0884	-	sugar transporter, permease protein
876	 62.88	0	962597..963625	+	342	50842372	-	PPA0885	-	hydroxyethylthiazole kinase
877	 63.35	+1	963450..964262	+	270	50842373	-	PPA0886	-	thiamin-phosphate pyrophosphorylase
878	 60.06	0	964375..965343	+	322	50842374	-	PPA0887	-	L-lactate dehydrogenase
879	 59.70	0	965386..967092	+	568	50842375	-	PPA0888	-	malate dehydrogenase
880	 60.90	0	967162..967716	-	184	50842376	-	PPA0889	-	putative glucoamylase S1/S2 precursor
881	 58.65	0	967856..968878	+	340	50842377	-	PPA0891	-	hypothetical protein
882	 62.23	0	968888..969946	-	352	50842378	-	PPA0892	-	mebrane associated protein, DUF125
60.05	MEAN

3.20	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.