IslandPathversion 1.0

IslandPath Analysis: Propionibacterium acnes KPA171202



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.05 STD DEV: 3.20
Propionibacterium acnes KPA171202, complete genome - 1..2560265
2297 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
559	 63.14	0	628653..629900	-	415	50842055	xseA	PPA0569	-	exodeoxyribonuclease VII large subunit
560	 58.87	0	629981..631507	-	508	50842056	-	PPA0570	-	putative phosphoesterase
561	 60.69	0	631516..632787	-	423	50842057	-	PPA0571	-	WD40 domain-containing protein
562	 61.01	0	632907..633878	+	323	50842058	ispH	PPA0572	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
563	 63.23	0	633882..635102	-	406	50842059	-	PPA0573	-	DNA recombination protein RmuC-like protein
564	 61.62	0	635181..636467	+	428	50842060	-	PPA0574	-	putative aminopeptidase 2
565	 57.73	0	636616..637689	+	357	50842061	-	PPA0575	-	translation-associated GTPase
566	 57.32	0	637820..638557	+	245	50842062	-	PPA0576	-	hypothetical protein
567	 58.12	0	638635..639102	-	155	50842063	-	PPA0577	-	hypothetical protein
568	 61.61	0	639165..640391	-	408	50842064	-	PPA0578	-	transporter, putative fucose permease
569	 59.22	0	640458..641075	-	205	50842065	-	PPA0579	-	MarR family transcriptional regulator
570	 64.10	+1	641010..641438	+	142	50842066	-	PPA0580	-	stress-induced protein
571	 61.59	0	641558..642247	+	229	50842067	-	PPA0581	-	NonF-related protein
572	 56.34	-1	643038..644519	+	493	50842068	-	PPA0582	-	arginine/ornithine antiporter
573	 58.47	0	644650..645894	+	414	50842069	-	PPA0583	-	arginine deiminase
574	 60.20	0	645968..646972	+	334	50842070	-	PPA0584	-	ornithine carbamoyltransferase, catabolic
575	 60.71	0	646993..647898	+	301	50842071	-	PPA0585	-	carbamate kinase
576	 53.72	-1	648015..648578	+	187	50842072	-	PPA0586	-	arginine repressor
577	 61.24	0	648760..649422	+	220	50842073	-	PPA0587	-	hypothetical protein
578	 58.38	0	649446..649964	+	172	50842074	-	PPA0588	-	hypothetical protein
579	 59.55	0	649990..650958	+	322	50842075	-	PPA0589	-	oxidoreductase, putative aldo/keto reductase
580	 57.54	0	651011..651514	+	167	50842076	-	PPA0590	-	thiol peroxidase
581	 57.89	0	651675..653099	+	474	50842077	-	PPA0591	-	lysine-specific permease
582	 60.11	0	653144..654379	+	411	50842078	-	PPA0592	-	alpha-amylase 3
583	 58.78	0	654404..655570	-	388	50842079	-	PPA0593	-	UDP-glucose 6-dehydrogenase
584	 62.83	0	655713..656651	-	312	50842080	-	PPA0594	-	putative lysophospholipase
585	 61.17	0	657197..659107	+	636	50842081	-	PPA0595	-	methylmalonyl-CoA mutase small subunit
586	 60.91	0	659104..661293	+	729	50842082	-	PPA0596	-	methylmalonyl-CoA mutase
587	 59.69	0	661447..662493	+	348	50842083	-	PPA0597	-	arginine/ornithine transport system ATPase
588	 60.83	0	662715..664187	+	490	50842084	-	PPA0598	-	serine protease
589	 63.20	0	664267..664497	-	76	50842085	-	PPA0599	-	hypothetical protein
590	 58.43	0	664528..665328	-	266	50842086	-	PPA0600	-	ABC-transporter, ATPase component
591	 59.02	0	665325..665873	-	182	50842087	-	PPA0601	-	ABC-type transporter, permease component
592	 56.16	-1	665919..666251	-	110	50842088	-	PPA0602	-	hypothetical protein
593	 62.06	0	666300..667298	-	332	50842089	-	PPA0603	-	putative transcriptional regulator
594	 58.31	0	667515..668735	+	406	50842090	-	PPA0604	-	putative sugar binding protein
595	 52.16	-2	668823..669146	+	107	50842091	-	PPA2403	-	hypothetical protein
596	 53.29	-2	669182..669667	+	161	50842092	-	PPA0605	-	putative sugar transport protein
597	 57.91	0	669695..670585	+	296	50842093	-	PPA0606	-	putative transport system permease protein
598	 59.74	0	670670..672040	+	456	50842094	-	PPA0607	-	glycosyl hydrolase, putative alpha-L-fucosidase
599	 60.59	0	672188..672763	+	191	50842095	-	PPA0608	-	L-fucose isomerase
600	 61.46	0	672646..673701	+	351	50842096	-	PPA0609	-	L-fucose isomerase
601	 60.27	0	673809..674105	+	98	50842097	-	PPA0610	-	class II aldolase and adducin N-terminal domain-containing protein
602	 63.36	+1	674068..674490	-	140	50842098	-	PPA0611	-	hypothetical protein
603	 60.39	0	674491..675255	+	254	50842099	-	PPA0612	-	ABC transporter, ATP-binding protein
604	 62.16	0	675252..677426	+	724	50842100	-	PPA0613	-	putative permease
605	 56.27	-1	677448..677726	+	92	50842101	-	PPA0614	-	hypothetical protein
606	 55.91	-1	677784..678638	-	284	50842102	-	PPA0615	-	ABC-type transporter, permease components
607	 63.18	0	678653..679456	-	267	50842103	-	PPA0616	-	ABC transporter, ATP-binding protein
608	 57.95	0	679498..680415	-	305	50842104	-	PPA0617	-	solute binding protein
609	 60.14	0	680534..681085	-	183	50842105	-	PPA0618	-	hydrolase, putative isochorismatase
610	 58.20	0	681082..682545	-	487	50842106	-	PPA0619	-	transport-protein, putative permease for cytosine/purines
611	 61.03	0	682635..686093	+	1152	50842107	-	PPA0620	-	NAD-dependent aldehyde dehydrogenase
612	 62.67	0	686124..687173	-	349	50842108	-	PPA0621	-	zinc-binding dehydrogenase
613	 62.74	0	687293..689023	+	576	50842109	-	PPA0622	-	putative dihydroxyacetone (glycerone) kinase protein
614	 59.92	0	689014..689517	-	167	50842110	-	PPA0623	-	putative purine phosphoribosyltransferase
615	 59.08	0	689607..690107	-	166	50842111	-	PPA0624	-	N-acetyltransferase
616	 60.78	0	690354..692018	+	554	50842112	pntA	PPA0625	-	NAD(P) transhydrogenase subunit alpha
617	 57.45	0	692022..693443	+	473	50842113	-	PPA0626	-	NAD(P) transhydrogenase subunit beta
618	 61.37	0	693589..693909	+	106	50842114	-	PPA0627	-	ferredoxin
619	 60.96	0	693906..695009	+	367	50842115	-	PPA0628	-	N-succinyldiaminopimelate aminotransferase
620	 62.09	0	695010..695948	-	312	50842116	-	PPA0629	-	putative lipoprotein
621	 61.68	0	695950..696912	-	320	50842117	-	PPA0630	-	transferase, putative tetrahydrodipicolinate N-succinyltransferase
622	 57.24	0	697007..697303	-	98	50842118	-	PPA0631	-	hypothetical protein
623	 55.79	-1	697293..698423	+	376	50842119	-	PPA0632	-	glycine amidinotransferase
624	 53.20	-2	698547..699608	+	353	50842120	-	PPA0633	-	putative permease
625	 57.95	0	699624..700919	+	431	50842121	-	PPA0634	-	proline/betaine transporter
626	 56.32	-1	700932..701540	-	202	50842122	-	PPA0635	-	putative regulator
627	 60.74	0	701664..702743	+	359	50842123	-	PPA0636	-	dipeptidase
628	 60.46	0	702788..703093	+	101	50842124	-	PPA0637	-	hypothetical protein
629	 60.71	0	703134..703301	+	55	50842125	-	PPA0638	-	hypothetical protein
630	 61.27	0	703365..704549	-	394	50842126	-	PPA0639	-	putative glycosyl transferase
631	 59.17	0	704693..705919	+	408	50842127	glgC	PPA0640	-	glucose-1-phosphate adenylyltransferase
632	 61.62	0	706002..706655	-	217	50842128	-	PPA0641	-	methyltransferase
633	 59.52	0	706725..707606	+	293	50842129	-	PPA0642	-	dihydrodipicolinate synthase
634	 57.97	0	707657..708070	+	137	50842130	-	PPA0643	-	sec-independent translocase
635	 62.10	0	708223..709797	-	524	50842131	-	PPA0644	-	endoglycoceramidase
636	 62.19	0	709853..711013	-	386	50842132	-	PPA0645	-	ATP-binding protein
637	 60.27	0	711075..711590	-	171	50842133	-	PPA0646	-	hypothetical protein
638	 62.64	0	711583..712848	-	421	50842134	-	PPA0647	-	putative magnesium (Mg2+) transporter MgtE
639	 57.45	0	712954..713463	+	169	50842135	-	PPA0648	-	hypothetical protein
640	 61.40	0	713577..714449	+	290	50842136	-	PPA0649	-	putative cytochrome oxidase assembly protein
641	 62.06	0	714480..715976	-	498	50842137	-	PPA0650	-	Xaa-Pro aminopeptidase I
642	 53.78	-1	716602..716958	+	118	50842138	-	PPA2404	-	hypothetical protein
643	 60.98	0	717501..718238	+	245	50842139	-	PPA0651	-	hypothetical protein
644	 62.14	0	718048..718599	-	183	50842140	-	PPA0652	-	hypothetical protein
645	 60.00	0	719343..719537	+	64	50842141	-	PPA0653	-	hypothetical protein
646	 60.48	0	719534..719905	+	123	50842142	-	PPA0655	-	hypothetical protein
647	 59.18	0	720198..721412	+	404	50842143	-	PPA0656	-	iron transport system substrate-binding protein
648	 62.71	0	721409..722443	+	344	50842144	-	PPA0657	-	iron transport system, permease protein
649	 61.76	0	722464..723237	+	257	50842145	-	PPA0658	-	ABC transporter, nucleotide binding/ATPase protein
650	 63.29	+1	723234..723854	+	206	50842146	-	PPA0659	-	putative NADH:ubiquinone oxidoreductase
651	 59.97	0	724101..726386	-	761	50842147	-	PPA0660	-	carbon starvation protein A
652	 60.47	0	726769..727623	-	284	50842148	-	PPA0661	-	methionine aminopeptidase
653	 57.14	0	727635..727865	-	76	50842149	-	PPA0662	-	hypothetical protein
654	 60.57	0	728027..728896	-	289	50842150	-	PPA0663	-	hypothetical protein
655	 56.86	0	728895..730301	+	468	50842151	-	PPA0664	-	glutamine synthetase
656	 60.74	0	730320..731162	-	280	50842152	-	PPA0665	-	hypothetical protein
657	 61.18	0	731253..734204	+	983	50842153	-	PPA0666	-	glutamate-ammonia-ligase adenyltransferase
658	 58.65	0	734198..735520	-	440	50842154	-	PPA0667	-	hypothetical protein
60.05	MEAN

3.20	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.