IslandPathversion 1.0

IslandPath Analysis: Propionibacterium acnes KPA171202



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.05 STD DEV: 3.20
Propionibacterium acnes KPA171202, complete genome - 1..2560265
2297 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
509	 56.51	-1	574652..574966	-	104	50842005	-	PPA0521	-	putative metal-transport protein
510	 59.61	0	575226..576671	-	481	50842006	-	PPA0522	-	putative uracyl permease
511	 60.04	0	576754..578337	-	527	50842007	-	PPA0523	-	putative dolichyl-phosphate-mannose-protein mannosyltransferase
512	 65.97	+1	578398..579258	+	286	50842008	-	PPA0524	-	putative tetrapyrrole (corrin/porphyrin) methylase
513	 61.72	0	579255..580163	+	302	50842009	-	PPA0525	-	DNase
514	 63.43	+1	580160..581056	+	298	50842010	ksgA	PPA0526	-	dimethyladenosine transferase
515	 62.55	0	581080..582051	+	323	50842011	-	PPA0527	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
516	 62.04	0	582048..582587	+	179	50842012	-	PPA0528	-	MarR family regulator
517	 62.28	0	582569..583252	-	227	50842013	-	PPA0529	-	TetR family transcriptional regulator
518	 61.74	0	583502..584800	+	432	50842014	-	PPA0530	-	N-acetylglucosamine-1-phosphate uridyltransferase
519	 57.89	0	584797..585765	+	322	50842015	-	PPA0531	-	ribose-phosphate pyrophosphokinase
520	 60.17	0	585914..587191	+	425	50842016	-	PPA0532	-	hypothetical protein
521	 59.47	0	587227..587796	+	189	50842017	-	PPA0533	-	hypothetical protein
522	 58.79	0	587816..588412	+	198	50842018	-	PPA0534	-	hypothetical protein
523	 60.58	0	588519..589208	+	229	50842019	-	PPA0535	-	ribosomal L25P family protein
524	 61.19	0	589205..589807	+	200	50842020	-	PPA0536	-	peptidyl-tRNA hydrolase
525	 49.79	-2	589847..590089	-	80	50842021	-	PPA0537	-	D-lactate dehydrogenase
526	 57.53	0	590153..590338	-	61	50842022	-	PPA0538	-	putative D-lactate dehydrogenase
527	 60.04	0	590844..591899	-	351	50842023	-	PPA0539	-	alcohol dehydrogenase
528	 58.51	0	592274..593413	-	379	50842024	-	PPA0540	-	hypothetical protein
529	 60.94	0	593435..597103	+	1222	50842025	-	PPA0541	-	transcription-repair coupling factor
530	 59.69	0	597165..597680	+	171	50842026	-	PPA0542	-	hypothetical protein
531	 61.97	0	597689..598327	+	212	50842027	-	PPA0543	-	nucleoside triphosphate pyrophosphohydrolase
532	 60.45	0	598443..598973	+	176	50842028	-	PPA0544	-	hypothetical protein
533	 60.50	0	599061..600341	+	426	50842029	eno	PPA0545	-	phosphopyruvate hydratase
534	 61.47	0	600428..601081	+	217	50842030	-	PPA0546	-	putative septum formation initiator
535	 61.33	0	601089..601631	+	180	50842031	-	PPA0547	-	hypothetical protein
536	 60.24	0	601628..602560	+	310	50842032	-	PPA0548	-	Ppx/GppA phosphatase family hydrolase
537	 58.99	0	602792..603625	+	277	50842033	-	PPA0549	-	membrane spanning protein
538	 63.51	+1	603697..604392	-	231	50842034	-	PPA0550	-	hypothetical protein
539	 56.42	-1	604469..605434	-	321	50842035	-	PPA0551	-	hypothetical protein
540	 52.94	-2	605764..605967	+	67	50842036	-	PPA0552	-	hypothetical protein
541	 58.63	0	611557..612054	-	165	50842037	-	PPA2401	-	hypothetical protein
542	 57.25	0	612064..612201	-	45	50842038	-	PPA2402	-	hypothetical protein
543	 54.17	-1	612190..612621	+	143	50842039	-	PPA0553	-	GtrA family membrane protein
544	 58.92	0	612696..614684	+	662	50842040	-	PPA0554	-	OPT family oligopeptide transporter
545	 61.34	0	614727..615590	-	287	50842041	-	PPA0555	-	aldo/keto reductase
546	 59.56	0	615706..616338	-	210	50842042	-	PPA0556	-	peptide methionine sulfoxide reductase
547	 58.33	0	616495..618114	+	539	50842043	-	PPA0557	-	sodium-and chloride-dependent transporter
548	 58.86	0	618243..618959	-	238	50842044	-	PPA0558	-	uracil-DNA glycosylase
549	 59.82	0	619028..620254	+	408	50842045	-	PPA0559	-	membrane spanning protein
550	 62.60	0	620292..621275	+	327	50842046	-	PPA0560	-	hypothetical protein
551	 60.95	0	621380..621886	-	168	50842047	-	PPA0561	-	transcription elongation factor GreA
552	 63.15	0	621908..622333	-	141	50842048	-	PPA0562	-	hypothetical protein
553	 62.70	0	622629..624644	+	671	50842049	-	PPA0563	-	hypothetical protein
554	 61.56	0	624666..625487	-	273	50842050	-	PPA0564	-	undecaprenyl pyrophosphate synthase
555	 58.48	0	625632..626303	+	223	50842051	-	PPA0565	-	putative hemolysin
556	 61.11	0	626450..627799	+	449	50842052	-	PPA0566	-	ATP-binding protein
557	 60.28	0	627819..628382	+	187	50842053	-	PPA0567	-	hypothetical protein
558	 61.60	0	628420..628656	-	78	50842054	-	PPA0568	-	exodeoxyribonuclease VII small subunit
559	 63.14	0	628653..629900	-	415	50842055	xseA	PPA0569	-	exodeoxyribonuclease VII large subunit
560	 58.87	0	629981..631507	-	508	50842056	-	PPA0570	-	putative phosphoesterase
561	 60.69	0	631516..632787	-	423	50842057	-	PPA0571	-	WD40 domain-containing protein
562	 61.01	0	632907..633878	+	323	50842058	ispH	PPA0572	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
563	 63.23	0	633882..635102	-	406	50842059	-	PPA0573	-	DNA recombination protein RmuC-like protein
564	 61.62	0	635181..636467	+	428	50842060	-	PPA0574	-	putative aminopeptidase 2
565	 57.73	0	636616..637689	+	357	50842061	-	PPA0575	-	translation-associated GTPase
566	 57.32	0	637820..638557	+	245	50842062	-	PPA0576	-	hypothetical protein
567	 58.12	0	638635..639102	-	155	50842063	-	PPA0577	-	hypothetical protein
568	 61.61	0	639165..640391	-	408	50842064	-	PPA0578	-	transporter, putative fucose permease
569	 59.22	0	640458..641075	-	205	50842065	-	PPA0579	-	MarR family transcriptional regulator
570	 64.10	+1	641010..641438	+	142	50842066	-	PPA0580	-	stress-induced protein
571	 61.59	0	641558..642247	+	229	50842067	-	PPA0581	-	NonF-related protein
572	 56.34	-1	643038..644519	+	493	50842068	-	PPA0582	-	arginine/ornithine antiporter
573	 58.47	0	644650..645894	+	414	50842069	-	PPA0583	-	arginine deiminase
574	 60.20	0	645968..646972	+	334	50842070	-	PPA0584	-	ornithine carbamoyltransferase, catabolic
575	 60.71	0	646993..647898	+	301	50842071	-	PPA0585	-	carbamate kinase
576	 53.72	-1	648015..648578	+	187	50842072	-	PPA0586	-	arginine repressor
577	 61.24	0	648760..649422	+	220	50842073	-	PPA0587	-	hypothetical protein
578	 58.38	0	649446..649964	+	172	50842074	-	PPA0588	-	hypothetical protein
579	 59.55	0	649990..650958	+	322	50842075	-	PPA0589	-	oxidoreductase, putative aldo/keto reductase
580	 57.54	0	651011..651514	+	167	50842076	-	PPA0590	-	thiol peroxidase
581	 57.89	0	651675..653099	+	474	50842077	-	PPA0591	-	lysine-specific permease
582	 60.11	0	653144..654379	+	411	50842078	-	PPA0592	-	alpha-amylase 3
583	 58.78	0	654404..655570	-	388	50842079	-	PPA0593	-	UDP-glucose 6-dehydrogenase
584	 62.83	0	655713..656651	-	312	50842080	-	PPA0594	-	putative lysophospholipase
585	 61.17	0	657197..659107	+	636	50842081	-	PPA0595	-	methylmalonyl-CoA mutase small subunit
586	 60.91	0	659104..661293	+	729	50842082	-	PPA0596	-	methylmalonyl-CoA mutase
587	 59.69	0	661447..662493	+	348	50842083	-	PPA0597	-	arginine/ornithine transport system ATPase
588	 60.83	0	662715..664187	+	490	50842084	-	PPA0598	-	serine protease
589	 63.20	0	664267..664497	-	76	50842085	-	PPA0599	-	hypothetical protein
590	 58.43	0	664528..665328	-	266	50842086	-	PPA0600	-	ABC-transporter, ATPase component
591	 59.02	0	665325..665873	-	182	50842087	-	PPA0601	-	ABC-type transporter, permease component
592	 56.16	-1	665919..666251	-	110	50842088	-	PPA0602	-	hypothetical protein
593	 62.06	0	666300..667298	-	332	50842089	-	PPA0603	-	putative transcriptional regulator
594	 58.31	0	667515..668735	+	406	50842090	-	PPA0604	-	putative sugar binding protein
595	 52.16	-2	668823..669146	+	107	50842091	-	PPA2403	-	hypothetical protein
596	 53.29	-2	669182..669667	+	161	50842092	-	PPA0605	-	putative sugar transport protein
597	 57.91	0	669695..670585	+	296	50842093	-	PPA0606	-	putative transport system permease protein
598	 59.74	0	670670..672040	+	456	50842094	-	PPA0607	-	glycosyl hydrolase, putative alpha-L-fucosidase
599	 60.59	0	672188..672763	+	191	50842095	-	PPA0608	-	L-fucose isomerase
600	 61.46	0	672646..673701	+	351	50842096	-	PPA0609	-	L-fucose isomerase
601	 60.27	0	673809..674105	+	98	50842097	-	PPA0610	-	class II aldolase and adducin N-terminal domain-containing protein
602	 63.36	+1	674068..674490	-	140	50842098	-	PPA0611	-	hypothetical protein
603	 60.39	0	674491..675255	+	254	50842099	-	PPA0612	-	ABC transporter, ATP-binding protein
604	 62.16	0	675252..677426	+	724	50842100	-	PPA0613	-	putative permease
605	 56.27	-1	677448..677726	+	92	50842101	-	PPA0614	-	hypothetical protein
606	 55.91	-1	677784..678638	-	284	50842102	-	PPA0615	-	ABC-type transporter, permease components
607	 63.18	0	678653..679456	-	267	50842103	-	PPA0616	-	ABC transporter, ATP-binding protein
608	 57.95	0	679498..680415	-	305	50842104	-	PPA0617	-	solute binding protein
60.05	MEAN

3.20	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.