IslandPath Analysis: Propionibacterium acnes KPA171202



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 60.05   STD DEV: 3.20
Propionibacterium acnes KPA171202, complete genome - 1..2560265
2297 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
453	 58.33	0	513559..514770	+	403	50841949	-	PPA0466	-	putative myo-inositol 2-dehydrogenase
454	 57.56	0	514880..516526	+	548	50841950	-	PPA0467	-	putative sugar transporter YfiG
455	 59.95	0	517136..517999	-	287	50841951	-	PPA0468	-	putative myo-inositol catabolism protein
456	 58.24	0	518116..519183	+	355	50841952	-	PPA0469	-	putative myo-inositol 2-dehydrogenase
457	 59.19	0	519116..520198	+	360	50841953	-	PPA0470	-	hypothetical protein
458	 62.07	0	520176..520871	+	231	50841954	-	PPA0471	-	putative copper homeostasis protein CutC
459	 59.40	0	520885..521889	-	334	50841955	-	PPA0472	-	hypothetical protein
460	 61.29	0	521933..524017	-	694	50841956	-	PPA0473	-	superfamily II DNA/RNA helicase
461	 63.85	+1	524223..526352	-	709	50841957	-	PPA0474	-	DeaD/DeaH box family protein
462	 62.70	0	526349..527104	-	251	50841958	-	PPA0475	-	hypothetical protein
463	 61.32	0	527278..528063	+	261	50841959	nagB	PPA0476	-	glucosamine-6-phosphate deaminase
464	 60.16	0	528210..528593	+	127	50841960	-	PPA0477	-	cold shock protein
465	 62.67	0	528593..529393	+	266	50841961	-	PPA0478	-	hypothetical protein
466	 58.61	0	529431..529703	-	90	50841962	-	PPA0479	-	hypothetical protein
467	 57.87	0	529719..531230	+	503	50841963	-	PPA0480	-	putative xanthine/uracil permease
468	 60.85	0	531205..531840	-	211	50841964	-	PPA0481	-	hypothetical protein
469	 59.24	0	532040..533062	+	340	50841965	-	PPA0482	-	hypothetical protein
470	 61.39	0	533059..534177	-	372	50841966	-	PPA0483	-	phosphoserine aminotransferase
471	 61.45	0	534270..535400	+	376	50841967	-	PPA0484	-	N-acetylglucosamine-6-phosphate deacetylase
472	 60.09	0	535554..536252	+	232	50841968	-	PPA0485	-	repressor
473	 61.77	0	536291..537352	+	353	50841969	-	PPA0486	-	hypothetical protein
474	 56.28	-1	537474..537839	+	121	50841970	-	PPA0487	-	thiol-disulfide isomerase
475	 59.25	0	538011..539627	+	538	50841971	-	PPA0488	-	sugar transporter family protein
476	 57.73	0	540108..541505	+	465	50841972	-	PPA0489	-	UTP--glucose-1-phosphate uridylyltransferase
477	 66.08	+1	541532..541873	+	113	50841973	-	PPA0490	-	hypothetical protein
478	 55.28	-1	541896..542264	-	122	50841974	-	PPA0491	-	large conductance mechanosensitive channel
479	 62.42	0	542376..543035	-	219	50841975	-	PPA0492	-	hypothetical protein
480	 58.75	0	543115..543417	-	100	50841976	-	PPA2407	-	hypothetical protein
481	 62.07	0	543495..544082	-	195	50841977	-	PPA0493	-	5-formyltetrahydrofolate cyclo-ligase
482	 62.39	0	544192..545499	+	435	50841978	-	PPA0494	-	putative molybdopterin biosynthesis enzyme
483	 61.19	0	545537..546211	+	224	50841979	-	PPA0495	-	putative ribosomal-protein-alanine acetyltransferase
484	 60.45	0	546284..547087	+	267	50841980	-	PPA0496	-	hypothetical protein
485	 60.03	0	547811..548488	-	225	50841981	-	PPA0497	-	putative component of anaerobic dehydrogenase
486	 65.02	+1	548485..548970	-	161	50841982	-	PPA0498	-	molybdenum cofactor biosynthesis protein
487	 65.39	+1	548936..550270	-	444	50841983	-	PPA0499	-	molybdenum cofactor biosynthesis protein
488	 64.07	+1	550267..550689	-	140	50841984	-	PPA0500	-	molybdopterin synthase MoaE
489	 61.67	0	550690..550929	-	79	50841985	-	PPA0501	-	putative molybdopterin converting factor
490	 63.21	0	550932..551972	-	346	50841986	moaA	PPA0502	-	molybdenum cofactor biosynthesis protein A
491	 60.14	0	552215..552643	+	142	50841987	-	PPA0503	-	putative molybdopterin-binding protein
492	 60.57	0	552649..553419	+	256	50841988	-	PPA0504	-	putative molybdate-binding protein precursor
493	 60.88	0	553543..555357	+	604	50841989	-	PPA0505	-	ABC transporter, putative molybdenum transport system
494	 59.74	0	555291..555911	-	206	50841990	-	PPA0506	-	putative regulator
495	 56.02	-1	556013..556726	-	237	50841991	-	PPA0507	-	nitrate reductase gamma subunit
496	 59.82	0	556723..557394	-	223	50841992	-	PPA0508	-	nitrate reductase delta subunit
497	 58.99	0	557396..558919	-	507	50841993	-	PPA0509	-	nitrate reductase beta chain
498	 61.56	0	558919..562656	-	1245	50841994	-	PPA0510	-	nitrate reductase alpha chain
499	 59.00	0	562714..564030	-	438	50841995	-	PPA0511	-	nitrate/nitrite transporter
500	 58.96	0	564217..564891	+	224	50841996	-	PPA0512	-	putative molybdopterin-guanine dinucleotide biosynthesis protein A
501	 63.67	+1	565188..565688	+	166	50841997	-	PPA0513	-	molybdenum cofactor biosynthesis protein
502	 58.70	0	565858..566133	+	91	50841998	-	PPA0514	-	putative molybdopterin-guanine dinucleotide biosynthesis protein
503	 58.06	0	566197..567207	-	336	50841999	-	PPA0515	-	anaerobic dimethyl sulfoxide reductase chain C
504	 58.26	0	567207..567848	-	213	50842000	-	PPA0516	-	anaerobic dimethyl sulfoxide reductase, chain B
505	 56.75	-1	568015..570576	-	853	50842001	-	PPA0517	-	anaerobic dimethyl sulfoxide reductase chain A
506	 62.65	0	571030..571875	-	281	50842002	-	PPA0518	-	putative molybdopterin biosynthesis protein MoeB
507	 62.71	0	571872..572705	-	277	50842003	thiG	PPA0519	-	thiazole synthase
508	 62.66	0	573023..574270	-	415	50842004	-	PPA0520	-	FAD dependent oxidoreductase
509	 56.51	-1	574652..574966	-	104	50842005	-	PPA0521	-	putative metal-transport protein
510	 59.61	0	575226..576671	-	481	50842006	-	PPA0522	-	putative uracyl permease
511	 60.04	0	576754..578337	-	527	50842007	-	PPA0523	-	putative dolichyl-phosphate-mannose-protein mannosyltransferase
512	 65.97	+1	578398..579258	+	286	50842008	-	PPA0524	-	putative tetrapyrrole (corrin/porphyrin) methylase
513	 61.72	0	579255..580163	+	302	50842009	-	PPA0525	-	DNase
514	 63.43	+1	580160..581056	+	298	50842010	ksgA	PPA0526	-	dimethyladenosine transferase
515	 62.55	0	581080..582051	+	323	50842011	-	PPA0527	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
516	 62.04	0	582048..582587	+	179	50842012	-	PPA0528	-	MarR family regulator
517	 62.28	0	582569..583252	-	227	50842013	-	PPA0529	-	TetR family transcriptional regulator
518	 61.74	0	583502..584800	+	432	50842014	-	PPA0530	-	N-acetylglucosamine-1-phosphate uridyltransferase
519	 57.89	0	584797..585765	+	322	50842015	-	PPA0531	-	ribose-phosphate pyrophosphokinase
520	 60.17	0	585914..587191	+	425	50842016	-	PPA0532	-	hypothetical protein
521	 59.47	0	587227..587796	+	189	50842017	-	PPA0533	-	hypothetical protein
522	 58.79	0	587816..588412	+	198	50842018	-	PPA0534	-	hypothetical protein
523	 60.58	0	588519..589208	+	229	50842019	-	PPA0535	-	ribosomal L25P family protein
524	 61.19	0	589205..589807	+	200	50842020	-	PPA0536	-	peptidyl-tRNA hydrolase
525	 49.79	-2	589847..590089	-	80	50842021	-	PPA0537	-	D-lactate dehydrogenase
526	 57.53	0	590153..590338	-	61	50842022	-	PPA0538	-	putative D-lactate dehydrogenase
527	 60.04	0	590844..591899	-	351	50842023	-	PPA0539	-	alcohol dehydrogenase
528	 58.51	0	592274..593413	-	379	50842024	-	PPA0540	-	hypothetical protein
529	 60.94	0	593435..597103	+	1222	50842025	-	PPA0541	-	transcription-repair coupling factor
530	 59.69	0	597165..597680	+	171	50842026	-	PPA0542	-	hypothetical protein
531	 61.97	0	597689..598327	+	212	50842027	-	PPA0543	-	nucleoside triphosphate pyrophosphohydrolase
532	 60.45	0	598443..598973	+	176	50842028	-	PPA0544	-	hypothetical protein
533	 60.50	0	599061..600341	+	426	50842029	eno	PPA0545	-	phosphopyruvate hydratase
534	 61.47	0	600428..601081	+	217	50842030	-	PPA0546	-	putative septum formation initiator
535	 61.33	0	601089..601631	+	180	50842031	-	PPA0547	-	hypothetical protein
536	 60.24	0	601628..602560	+	310	50842032	-	PPA0548	-	Ppx/GppA phosphatase family hydrolase
537	 58.99	0	602792..603625	+	277	50842033	-	PPA0549	-	membrane spanning protein
538	 63.51	+1	603697..604392	-	231	50842034	-	PPA0550	-	hypothetical protein
539	 56.42	-1	604469..605434	-	321	50842035	-	PPA0551	-	hypothetical protein
540	 52.94	-2	605764..605967	+	67	50842036	-	PPA0552	-	hypothetical protein
541	 58.63	0	611557..612054	-	165	50842037	-	PPA2401	-	hypothetical protein
542	 57.25	0	612064..612201	-	45	50842038	-	PPA2402	-	hypothetical protein
543	 54.17	-1	612190..612621	+	143	50842039	-	PPA0553	-	GtrA family membrane protein
544	 58.92	0	612696..614684	+	662	50842040	-	PPA0554	-	OPT family oligopeptide transporter
545	 61.34	0	614727..615590	-	287	50842041	-	PPA0555	-	aldo/keto reductase
546	 59.56	0	615706..616338	-	210	50842042	-	PPA0556	-	peptide methionine sulfoxide reductase
547	 58.33	0	616495..618114	+	539	50842043	-	PPA0557	-	sodium-and chloride-dependent transporter
548	 58.86	0	618243..618959	-	238	50842044	-	PPA0558	-	uracil-DNA glycosylase
549	 59.82	0	619028..620254	+	408	50842045	-	PPA0559	-	membrane spanning protein
550	 62.60	0	620292..621275	+	327	50842046	-	PPA0560	-	hypothetical protein
551	 60.95	0	621380..621886	-	168	50842047	-	PPA0561	-	transcription elongation factor GreA
552	 63.15	0	621908..622333	-	141	50842048	-	PPA0562	-	hypothetical protein
60.05	MEAN

3.20	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.