IslandPathversion 1.0

IslandPath Analysis: Propionibacterium acnes KPA171202



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.05 STD DEV: 3.20
Propionibacterium acnes KPA171202, complete genome - 1..2560265
2297 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
368	 64.26	+1	428537..429409	+	290	50841864	-	PPA0381	-	hypothetical protein
369	 64.15	+1	429195..430067	+	290	50841865	-	PPA0382	-	hypothetical protein
370	 65.52	+1	430312..431268	-	318	50841866	-	PPA0383	-	putative tRNA/rRNA methyltransferase
371	 60.08	0	431282..432754	-	490	50841867	cysS	PPA0384	-	cysteinyl-tRNA synthetase
372	 65.30	+1	432761..432979	+	72	50841868	-	PPA0385	-	hypothetical protein
373	 61.38	0	432990..434408	-	472	50841869	-	PPA0386	-	hypothetical protein
374	 57.03	0	434660..435178	+	172	50841870	-	PPA0387	-	hypothetical protein
375	 55.91	-1	435190..435375	+	61	50841871	-	PPA0388	-	hypothetical protein
376	 61.59	0	435375..435788	+	137	50841872	-	PPA0389	-	hypothetical protein
377	 59.82	0	435790..436344	+	184	50841873	-	PPA0390	-	hypothetical protein
378	 60.67	0	436341..437057	+	238	50841874	-	PPA0391	-	hypothetical protein
379	 58.68	0	437114..437689	+	191	50841875	-	PPA0392	-	putative RNA polymerase sigma factor
380	 58.67	0	437680..438204	+	174	50841876	-	PPA0393	-	hypothetical protein
381	 55.93	-1	438197..438550	+	117	50841877	-	PPA0394	-	hypothetical protein
382	 60.61	0	438616..439935	-	439	50841878	-	PPA0395	-	ABC transporter ATP-binding protein
383	 63.05	0	440439..441875	-	478	50841879	-	PPA0396	-	L-serine dehydratase
384	 63.03	0	442217..444526	+	769	50841880	-	PPA0397	-	oxidoreductase
385	 56.46	-1	444549..445841	+	430	50841881	-	PPA0398	-	putative sugar-binding protein
386	 60.61	0	445838..446794	+	318	50841882	-	PPA0399	-	sugar ABC transporter
387	 59.64	0	446796..447677	+	293	50841883	-	PPA0400	-	putative transport system permease protein
388	 59.92	0	448031..449068	+	345	50841884	tdh	PPA0402	-	L-threonine 3-dehydrogenase
389	 59.48	0	449094..450290	+	398	50841885	-	PPA0403	-	2-amino-3-ketobutyrate coenzyme A ligase
390	 58.44	0	450307..451230	-	307	50841886	-	PPA0404	-	putative substrate-binding protein
391	 60.63	0	451252..451947	-	231	50841887	-	PPA0405	-	ABC transporter-associated permease
392	 62.04	0	451944..452591	-	215	50841888	-	PPA0406	-	ABC transporter-associated permease
393	 60.45	0	452588..453424	-	278	50841889	-	PPA0407	-	putative ABC transporter ATP-binding subunit
394	 60.30	0	453574..454374	+	266	50841890	-	PPA0408	-	hypothetical protein
395	 58.33	0	454390..454761	+	123	50841891	-	PPA0409	-	hypothetical protein
396	 62.60	0	454792..455307	-	171	161621800	-	PPA0410	-	hypothetical protein
397	 61.36	0	455425..456441	+	338	50841893	-	PPA0411	-	zinc-binding dehydrogenase
398	 61.54	0	456507..457520	+	337	50841894	-	PPA0412	-	putative ABC transporter ATP-binding protein
399	 59.83	0	457517..458101	+	194	50841895	-	PPA0413	-	putative permease
400	 59.67	0	458088..458387	-	99	50841896	-	PPA0414	-	hypothetical protein
401	 62.55	0	458331..459497	+	388	50841897	-	PPA0415	-	putative sensor histidine kinase, two-component system
402	 64.09	+1	459502..460122	+	206	50841898	-	PPA0416	-	two-component system response regulator
403	 63.14	0	460395..461102	-	235	50841899	-	PPA0417	-	phosphoglycerate mutase family protein
404	 68.03	+2	461019..462047	+	342	50841900	-	PPA0418	-	cobalamin biosynthesis CobD/CbiB protein
405	 63.71	+1	462065..463519	+	484	50841901	-	PPA0419	-	cobyric acid synthase
406	 59.00	0	463550..463849	+	99	50841902	-	PPA2397	-	hypothetical protein
407	 62.57	0	463846..464601	+	251	50841903	-	PPA0420	-	tetrapyrrole methylase, putative precorrin-2 C20-methyltransferase, CbiL
408	 63.27	+1	464598..465569	+	323	50841904	-	PPA0421	-	tetrapyrrole methylase, putative precorrin-3 methylase, CbiF
409	 62.70	0	465566..468136	+	856	50841905	-	PPA0422	-	tetrapyrrole methylase, putative CbiE/G/H fusion protein
410	 64.62	+1	468133..469401	+	422	50841906	-	PPA0423	-	cobalamin synthesis protein, fusion CysG+CbiX
411	 60.67	0	469443..470309	+	288	50841907	-	PPA0424	-	hypothetical protein
412	 60.54	0	470521..470928	-	135	50841908	-	PPA2398	-	hypothetical protein
413	 63.19	0	470958..472022	+	354	50841909	-	PPA0425	-	FecCD-family membrane transport protein
414	 63.01	0	472019..472810	+	263	50841910	-	PPA0426	-	Fe uptake system permease
415	 57.61	0	472812..473882	+	356	50841911	-	PPA0427	-	putative iron transport lipoprotein
416	 58.03	0	473959..475185	-	408	50841912	-	PPA0428	-	AAA family ATPase
417	 60.09	0	475278..475931	-	217	50841913	cobH	PPA0429	-	precorrin-8X methylmutase
418	 58.77	0	476237..476920	+	227	50841914	-	PPA0430	-	cobalt transport protein CbiM
419	 59.77	0	476913..477347	+	144	50841915	-	PPA0432	-	cobalt transport protein CbiN
420	 61.58	0	477344..478189	+	281	50841916	-	PPA0433	-	cobalt transport protein CbiQ
421	 63.20	0	478186..479022	+	278	50841917	-	PPA0434	-	membrane associated cobalt transport protein CbiO
422	 62.90	0	479075..479764	+	229	50841918	-	PPA0435	-	hypothetical protein
423	 64.32	+1	479791..480387	-	198	50841919	-	PPA0436	-	precorrin 8 decarboxylase CbiT
424	 62.76	0	480617..481231	+	204	50841920	-	PPA0437	-	cob(I)yrinic acid a,c-diamide adenosyltransferase
425	 63.86	+1	481231..483654	+	807	50841921	-	PPA0438	-	cobyrinic acid a,c-diamide synthase
426	 63.96	+1	483664..484440	+	258	50841922	-	PPA0439	-	uroporphyrinogen III methyltransferase
427	 63.35	+1	484460..485212	-	250	161621799	-	PPA0440	-	cobalt-precorrin-6x reductase
428	 62.77	0	485439..487106	+	555	50841924	-	PPA0441	-	phosphoribosyltransferase, cobalamin biosynthesis enzyme, fusion CobTU
429	 63.06	0	487055..487942	+	295	50841925	-	PPA0442	-	putative cobalamin-5-phosphate synthase, CobS
430	 61.05	0	487939..488703	+	254	50841926	-	PPA0443	-	metal binding protein
431	 57.08	0	488925..490562	-	545	50841927	-	PPA0444	-	hypothetical protein
432	 51.85	-2	490993..491181	+	62	50841928	-	PPA0445	-	hypothetical protein
433	 60.69	0	491219..492808	-	529	50841929	ulaA	PPA0446	-	ascorbate-specific PTS system enzyme IIC
434	 58.92	0	492858..493787	-	309	50841930	-	PPA0447	-	phosphotransferase system protein, mannitol/fructose-specific IIA subunit
435	 53.01	-2	494686..495183	+	165	50841931	-	PPA0448	-	hypothetical protein
436	 48.99	-2	495192..495638	+	148	50841932	-	PPA0449	-	hypothetical protein
437	 60.04	0	495789..496241	-	150	161621798	-	PPA0450	-	S-ribosylhomocysteinase
438	 60.58	0	496309..497490	-	393	50841934	-	PPA0451	-	phosphomannose isomerase
439	 62.81	0	497535..497819	-	94	50841935	-	PPA0452	-	hypothetical protein
440	 61.96	0	498152..499786	+	544	50841936	groEL	PPA0453	-	chaperonin GroEL
441	 59.42	0	499921..500997	-	358	50841937	-	PPA0454	-	transaldolase
442	 62.63	0	501099..501842	-	247	50841938	-	PPA0455	-	GntR family transcriptional regulator
443	 60.91	0	502057..503046	+	329	50841939	-	PPA0456	-	carbohydrate kinase
444	 61.38	0	502890..503930	+	346	50841940	-	PPA0457	-	hypothetical protein
445	 60.71	0	503927..504799	+	290	50841941	-	PPA0458	-	putative myo-inositol catabolism protein IolB
446	 60.51	0	504802..506700	+	632	50841942	-	PPA0459	-	thiamine pyrophosphate-requiring enzyme, putative acetolactate synthase
447	 57.78	0	506845..507159	-	104	50841943	-	PPA0460	-	hypothetical protein
448	 59.84	0	507448..508941	+	497	50841944	-	PPA0461	-	methylmalonic acid semialdehyde dehydrogenase
449	 62.59	0	509037..510017	+	326	50841945	-	PPA0462	-	LacI family transcription regulator
450	 58.77	0	510154..511368	+	404	50841946	-	PPA0463	-	dehydrogenase, putative myo-inositol 2-dehydrogenase
451	 55.26	-1	511413..512411	+	332	50841947	-	PPA0464	-	sugar phosphate isomerase/epimerase
452	 54.79	-1	512483..513349	+	288	50841948	-	PPA0465	-	myo-inositol catabolism IolH protein
453	 58.33	0	513559..514770	+	403	50841949	-	PPA0466	-	putative myo-inositol 2-dehydrogenase
454	 57.56	0	514880..516526	+	548	50841950	-	PPA0467	-	putative sugar transporter YfiG
455	 59.95	0	517136..517999	-	287	50841951	-	PPA0468	-	putative myo-inositol catabolism protein
456	 58.24	0	518116..519183	+	355	50841952	-	PPA0469	-	putative myo-inositol 2-dehydrogenase
457	 59.19	0	519116..520198	+	360	50841953	-	PPA0470	-	hypothetical protein
458	 62.07	0	520176..520871	+	231	50841954	-	PPA0471	-	putative copper homeostasis protein CutC
459	 59.40	0	520885..521889	-	334	50841955	-	PPA0472	-	hypothetical protein
460	 61.29	0	521933..524017	-	694	50841956	-	PPA0473	-	superfamily II DNA/RNA helicase
461	 63.85	+1	524223..526352	-	709	50841957	-	PPA0474	-	DeaD/DeaH box family protein
462	 62.70	0	526349..527104	-	251	50841958	-	PPA0475	-	hypothetical protein
463	 61.32	0	527278..528063	+	261	50841959	nagB	PPA0476	-	glucosamine-6-phosphate deaminase
464	 60.16	0	528210..528593	+	127	50841960	-	PPA0477	-	cold shock protein
465	 62.67	0	528593..529393	+	266	50841961	-	PPA0478	-	hypothetical protein
466	 58.61	0	529431..529703	-	90	50841962	-	PPA0479	-	hypothetical protein
467	 57.87	0	529719..531230	+	503	50841963	-	PPA0480	-	putative xanthine/uracil permease
60.05	MEAN

3.20	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.