IslandPath Analysis: Propionibacterium acnes KPA171202



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 60.05   STD DEV: 3.20
Propionibacterium acnes KPA171202, complete genome - 1..2560265
2297 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
303	 61.73	0	363162..364559	-	465	50841799	-	PPA0312	-	DNA repair protein RadA
304	 58.77	0	364625..366271	-	548	50841800	-	PPA0313	-	malate dehydrogenase
305	 61.19	0	366335..366973	-	212	50841801	-	PPA0314	-	hypothetical protein
306	 57.77	0	367125..368012	+	295	50841802	-	PPA0315	-	putative AP endonuclease family protein
307	 58.97	0	368075..368971	+	298	50841803	-	PPA0316	-	putative proline dehydrogenase
308	 61.89	0	368971..369807	+	278	50841804	-	PPA0317	-	putative protease
309	 60.96	0	369582..370895	+	437	50841805	-	PPA0318	-	aspartate-semialdehyde dehydrogenase
310	 61.74	0	370892..371683	+	263	50841806	-	PPA0319	-	putative delta-1-pyrroline-5-carboxylate reductase
311	 58.82	0	371819..371920	+	33	50841807	-	PPA0320	-	hypothetical protein
312	 58.48	0	371940..372281	+	113	50841808	-	PPA0321	-	hypothetical protein
313	 60.66	0	372405..374120	+	571	50841809	-	PPA0323	-	uroporphyrinogen-III synthase, HemD
314	 61.73	0	374191..374859	+	222	50841810	-	PPA0324	-	putative phosphoglycerate mutase
315	 59.47	0	374856..375425	+	189	50841811	-	PPA0325	-	hypothetical protein
316	 60.89	0	375422..376183	+	253	50841812	-	PPA0326	-	cytochrome c biogenesis protein
317	 59.06	0	376261..377772	+	503	50841813	-	PPA0327	-	putative c-type cytochrome biogenesis protein
318	 60.88	0	377769..378650	+	293	50841814	-	PPA0328	-	putative cytochrome c biogenesis protein
319	 60.18	0	378637..380100	+	487	50841815	-	PPA0329	-	putative sigma subunit
320	 62.89	0	380112..380906	-	264	50841816	-	PPA0330	-	putative short chain dehydrogenase
321	 43.39	-2	381123..382196	-	357	50841817	-	PPA0331	-	hypothetical protein
322	 61.42	0	382407..383111	-	234	50841818	-	PPA0332	-	hypothetical protein
323	 60.46	0	383235..384635	+	466	50841819	-	PPA0333	-	mycothione/glutathione reductase
324	 59.59	0	384718..385734	-	338	50841820	-	PPA0334	-	putative ABC-type transporter, periplasmic component
325	 61.00	0	385746..386504	-	252	50841821	-	PPA0335	-	ABC-type transporter, ATPase component
326	 63.35	+1	386501..387526	-	341	50841822	-	PPA0336	-	putative permease, FecCD transport family protein
327	 63.85	+1	387764..388651	-	295	50841823	-	PPA0337	-	siderophore-interacting protein
328	 60.10	0	388878..389654	-	258	50841824	-	PPA0338	-	phosphate transport ATP-binding protein PstB
329	 59.22	0	389673..390599	-	308	50841825	-	PPA0339	-	phosphate transport system permease protein PstA
330	 60.30	0	390596..391600	-	334	50841826	-	PPA0340	-	putative phosphate transport system permease protein PstC
331	 60.68	0	391709..392860	-	383	50841827	-	PPA0341	-	phosphate-binding protein
332	 58.81	0	393033..393974	-	313	50841828	-	PPA0342	-	hypothetical protein
333	 61.06	0	393982..396087	-	701	50841829	-	PPA0343	-	polyphosphate kinase
334	 59.80	0	396209..396922	-	237	50841830	-	PPA0344	-	transcriptional regulatory protein
335	 61.81	0	396981..397865	+	294	50841831	-	PPA0345	-	hypothetical protein
336	 64.38	+1	397880..398317	-	145	50841832	-	PPA0346	-	D-tyrosyl-tRNA deacylase
337	 61.88	0	398513..399013	+	166	50841833	-	PPA0347	-	hypothetical protein
338	 64.23	+1	399015..399956	+	313	50841834	-	PPA0348	-	putative glycine cleavage T-protein
339	 51.88	-2	399997..401382	+	461	50841835	-	PPA0349	-	putative glycosyltransferase
340	 61.92	0	401405..402142	-	245	50841836	-	PPA0350	-	short chain dehydrogenase
341	 64.05	+1	402218..403936	-	572	50841837	-	PPA0351	-	putative phosphoenolpyruvate-protein kinase
342	 64.42	+1	403896..404162	-	88	50841838	-	PPA0352	-	phosphocarrier protein HPr
343	 58.92	0	404249..405061	+	270	50841839	-	PPA0353	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
344	 61.14	0	405058..405564	+	168	50841840	ispF	PPA0354	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
345	 57.28	0	405511..405915	-	134	50841841	-	PPA0355	-	putative PTS family protein
346	 56.46	-1	406113..406406	+	97	50841842	-	PPA0356	-	putative phosphotransferase enzyme
347	 53.91	-1	406490..406975	-	161	50841843	-	PPA0357	-	putative transcriptional regulator
348	 59.08	0	407115..407720	+	201	50841844	-	PPA0358	-	hypothetical protein
349	 59.77	0	407773..408453	-	226	50841845	-	PPA0359	-	response regulator
350	 60.32	0	408450..409631	-	393	50841846	-	PPA0360	-	putative sensor kinase
351	 59.84	0	409714..410460	+	248	50841847	-	PPA0361	-	putative phosphate transport system protein
352	 58.82	0	410606..411676	+	356	50841848	-	PPA0363	-	polysaccharide deacetylase
353	 62.13	0	411768..412517	-	249	50841849	-	PPA0364	-	phosphoglyceromutase
354	 57.95	0	412642..413100	-	152	50841850	-	PPA0365	-	putative PTS system
355	 59.52	0	413345..413638	-	97	50841851	-	PPA0366	-	putative phosphotransferase enzyme
356	 59.34	0	413845..414840	-	331	50841852	-	PPA0367	-	L-asparaginase I
357	 60.11	0	414841..416289	-	482	50841853	-	PPA0368	-	amino acid permease
358	 62.94	0	416665..418140	-	491	50841854	glyA	PPA0369	-	serine hydroxymethyltransferase
359	 63.03	0	418254..419354	-	366	50841855	-	PPA0370	-	carbohydrate kinase
360	 67.13	+2	419351..419998	-	215	50841856	-	PPA0371	-	KHG/KDPG aldolase
361	 63.58	+1	420201..420977	+	258	50841857	fabG	PPA0372	-	3-ketoacyl-(acyl-carrier-protein) reductase
362	 64.39	+1	420943..421338	+	131	50841858	-	PPA0373	-	putative oxidoreductase
363	 61.64	0	423025..423681	+	218	50841859	-	PPA0376	-	putative glycosyl hydrolase
364	 66.67	+2	423884..424591	-	235	50841860	-	PPA0377	-	hypothetical protein
365	 62.91	0	424584..425408	-	274	50841861	-	PPA0378	-	putative oxidoreductase
366	 65.36	+1	425575..425880	+	101	50841862	-	PPA0379	-	putative dehydrogenase
367	 64.95	+1	425934..428375	-	813	50841863	-	PPA0380	-	hyalorunate lyase
368	 64.26	+1	428537..429409	+	290	50841864	-	PPA0381	-	hypothetical protein
369	 64.15	+1	429195..430067	+	290	50841865	-	PPA0382	-	hypothetical protein
370	 65.52	+1	430312..431268	-	318	50841866	-	PPA0383	-	putative tRNA/rRNA methyltransferase
371	 60.08	0	431282..432754	-	490	50841867	cysS	PPA0384	-	cysteinyl-tRNA synthetase
372	 65.30	+1	432761..432979	+	72	50841868	-	PPA0385	-	hypothetical protein
373	 61.38	0	432990..434408	-	472	50841869	-	PPA0386	-	hypothetical protein
374	 57.03	0	434660..435178	+	172	50841870	-	PPA0387	-	hypothetical protein
375	 55.91	-1	435190..435375	+	61	50841871	-	PPA0388	-	hypothetical protein
376	 61.59	0	435375..435788	+	137	50841872	-	PPA0389	-	hypothetical protein
377	 59.82	0	435790..436344	+	184	50841873	-	PPA0390	-	hypothetical protein
378	 60.67	0	436341..437057	+	238	50841874	-	PPA0391	-	hypothetical protein
379	 58.68	0	437114..437689	+	191	50841875	-	PPA0392	-	putative RNA polymerase sigma factor
380	 58.67	0	437680..438204	+	174	50841876	-	PPA0393	-	hypothetical protein
381	 55.93	-1	438197..438550	+	117	50841877	-	PPA0394	-	hypothetical protein
382	 60.61	0	438616..439935	-	439	50841878	-	PPA0395	-	ABC transporter ATP-binding protein
383	 63.05	0	440439..441875	-	478	50841879	-	PPA0396	-	L-serine dehydratase
384	 63.03	0	442217..444526	+	769	50841880	-	PPA0397	-	oxidoreductase
385	 56.46	-1	444549..445841	+	430	50841881	-	PPA0398	-	putative sugar-binding protein
386	 60.61	0	445838..446794	+	318	50841882	-	PPA0399	-	sugar ABC transporter
387	 59.64	0	446796..447677	+	293	50841883	-	PPA0400	-	putative transport system permease protein
388	 59.92	0	448031..449068	+	345	50841884	tdh	PPA0402	-	L-threonine 3-dehydrogenase
389	 59.48	0	449094..450290	+	398	50841885	-	PPA0403	-	2-amino-3-ketobutyrate coenzyme A ligase
390	 58.44	0	450307..451230	-	307	50841886	-	PPA0404	-	putative substrate-binding protein
391	 60.63	0	451252..451947	-	231	50841887	-	PPA0405	-	ABC transporter-associated permease
392	 62.04	0	451944..452591	-	215	50841888	-	PPA0406	-	ABC transporter-associated permease
393	 60.45	0	452588..453424	-	278	50841889	-	PPA0407	-	putative ABC transporter ATP-binding subunit
394	 60.30	0	453574..454374	+	266	50841890	-	PPA0408	-	hypothetical protein
395	 58.33	0	454390..454761	+	123	50841891	-	PPA0409	-	hypothetical protein
396	 62.60	0	454792..455307	-	171	161621800	-	PPA0410	-	hypothetical protein
397	 61.36	0	455425..456441	+	338	50841893	-	PPA0411	-	zinc-binding dehydrogenase
398	 61.54	0	456507..457520	+	337	50841894	-	PPA0412	-	putative ABC transporter ATP-binding protein
399	 59.83	0	457517..458101	+	194	50841895	-	PPA0413	-	putative permease
400	 59.67	0	458088..458387	-	99	50841896	-	PPA0414	-	hypothetical protein
401	 62.55	0	458331..459497	+	388	50841897	-	PPA0415	-	putative sensor histidine kinase, two-component system
402	 64.09	+1	459502..460122	+	206	50841898	-	PPA0416	-	two-component system response regulator
60.05	MEAN

3.20	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.