IslandPath Analysis: Propionibacterium acnes KPA171202



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 60.05   STD DEV: 3.20
Propionibacterium acnes KPA171202, complete genome - 1..2560265
2297 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 56.95	0	245..1747	+	500	50841497	-	PPA0001	-	chromosomal replication initiator protein DnaA
2	 58.48	0	2219..3379	+	386	161621802	-	PPA0002	-	DNA polymerase III subunit beta
3	 60.91	0	3666..4169	+	167	50841499	-	PPA0003	-	hypothetical protein
4	 59.58	0	4227..5411	+	394	50841500	recF	PPA0004	-	recombination protein F
5	 61.08	0	5389..5997	+	202	50841501	-	PPA0005	-	hypothetical protein
6	 58.59	0	8304..9491	+	395	50841502	-	PPA0008	-	mannose-6-phosphate isomerase
7	 59.86	0	9733..11805	+	690	50841503	gyrB	PPA0009	-	DNA gyrase subunit B
8	 61.02	0	11847..14522	+	891	50841504	-	PPA0010	-	DNA gyrase subunit A
9	 58.61	0	14515..15147	+	210	50841505	-	PPA0011	-	hypothetical protein
10	 61.82	0	15246..16214	-	322	50841506	-	PPA0012	-	L-lactate dehydrogenase
11	 57.44	0	16412..16606	+	64	50841507	-	PPA0013	-	hypothetical protein
12	 59.23	0	16732..17739	+	335	50841508	-	PPA0014	-	putative transcriptional regulator
13	 58.96	0	17736..19241	+	501	50841509	-	PPA0015	-	ABC transporter protein
14	 54.19	-1	19324..20301	+	325	50841510	-	PPA0016	-	ribose ABC transporter
15	 55.94	-1	20350..21291	+	313	50841511	-	PPA0017	-	periplasmic sugar-binding protein
16	 61.94	0	21288..22217	+	309	50841512	-	PPA0018	-	sugar kinase
17	 57.81	0	22214..22597	+	127	50841513	-	PPA0019	-	D-ribose pyranase
18	 54.81	-1	22780..23049	+	89	50841514	-	PPA0020	-	hypothetical protein
19	 51.15	-2	23201..23677	-	158	50841515	-	PPA0021	-	PTS system, galactitol-specific IIA component
20	 54.18	-1	23734..24990	-	418	50841516	-	PPA0022	-	PTS system, galactitol-specific IIC component
21	 53.47	-2	25011..25313	-	100	50841517	-	PPA0023	-	PTS system, galactitol-specific IIB component
22	 55.99	-1	25303..25686	-	127	50841518	-	PPA0025	-	alcohol dehydrogenase
23	 47.72	-2	28427..28711	-	94	50841519	-	PPA2391	-	hypothetical protein
24	 59.84	0	28718..29083	-	121	50841520	-	PPA2390	-	hypothetical protein
25	 63.24	0	29313..29984	-	223	50841521	-	PPA0029	-	hypothetical protein
26	 66.84	+2	30008..30586	-	192	50841522	-	PPA0030	-	putative phosphatase
27	 62.19	0	30784..31542	+	252	50841523	-	PPA0031	-	transcriptional regulator
28	 53.66	-1	31730..32152	+	140	50841524	-	PPA2392	-	hypothetical protein
29	 57.18	0	32158..32895	-	245	50841525	-	PPA0032	-	hypothetical protein
30	 52.22	-2	32889..33428	-	179	50841526	-	PPA0033	-	hypothetical protein
31	 62.42	0	33561..34619	+	352	50841527	-	PPA0034	-	putative aminotransferase
32	 61.55	0	35552..36118	+	188	50841528	-	PPA0037	-	acetyltransferase
33	 61.21	0	36132..36791	+	219	50841529	-	PPA0038	-	hypothetical protein
34	 61.50	0	37044..37682	+	212	50841530	-	PPA0039	-	hypothetical protein
35	 61.66	0	37682..38500	+	272	50841531	-	PPA0040	-	hypothetical protein
36	 61.19	0	38497..39975	+	492	50841532	-	PPA0041	-	secretion system protein
37	 61.79	0	39966..40847	+	293	50841533	-	PPA0042	-	membrane spanning protein
38	 61.35	0	40840..41742	+	300	50841534	-	PPA0043	-	membrane associated protein
39	 60.18	0	41739..42401	+	220	50841535	-	PPA0044	-	hypothetical protein
40	 61.37	0	42398..42907	+	169	50841536	-	PPA0046	-	hypothetical protein
41	 62.76	0	42904..45666	+	920	50841537	-	PPA0047	-	hypothetical protein
42	 60.86	0	45713..47125	-	470	50841538	-	PPA0048	-	hypothetical protein
43	 60.82	0	47426..49135	+	569	50841539	-	PPA0049	-	formate--tetrahydrofolate ligase
44	 60.63	0	49241..49654	+	137	50841540	-	PPA0050	-	hypothetical protein
45	 58.19	0	49651..50181	-	176	50841541	-	PPA0051	-	hypothetical protein
46	 61.19	0	50197..50871	-	224	50841542	-	PPA0052	-	hypothetical protein
47	 59.95	0	51068..53539	-	823	50841543	-	PPA0053	-	ABC transporter associated permease
48	 60.97	0	53539..54573	-	344	50841544	-	PPA0054	-	ABC transporter ATP-binding protein
49	 60.43	0	54681..55337	-	218	50841545	-	PPA0055	-	two-component response regulator
50	 55.23	-1	55356..55967	-	203	50841546	-	PPA0056	-	hypothetical protein
51	 57.64	0	56040..56870	-	276	50841547	-	PPA0057	-	sugar transport permease BglB
52	 54.96	-1	56867..57763	-	298	50841548	-	PPA0058	-	transport permease
53	 61.38	0	57848..59152	-	434	50841549	-	PPA0059	-	sugar-binding protein
54	 55.21	-1	59132..59323	+	63	50841550	-	PPA2395	-	hypothetical protein
55	 61.14	0	59565..60251	+	228	50841551	-	PPA0060	-	DeoR family transcriptional regulator
56	 63.64	+1	60248..61636	+	462	50841552	-	PPA0061	-	putative glucosidase
57	 63.69	+1	61629..64757	+	1042	50841553	-	PPA0062	-	glycosyl hydrolase
58	 66.67	+2	64754..65809	+	351	50841554	-	PPA0063	-	hypothetical protein
59	 63.88	+1	65803..66447	+	214	50841555	-	PPA0064	-	putative hydrolase
60	 63.50	+1	66444..67739	+	431	50841556	-	PPA0065	-	hypothetical protein
61	 64.39	+1	67723..69261	-	512	50841557	-	PPA0066	-	glycosyl hydrolase
62	 64.21	+1	69367..70302	+	311	50841558	-	PPA0067	-	putative carbohydrate kinase
63	 63.97	+1	70321..71691	-	456	50841559	-	PPA0068	-	putative two component sensor kinase
64	 59.09	0	71871..72860	+	329	50841560	-	PPA0069	-	UDP-glucose 4-epimerase
65	 61.52	0	72933..73748	-	271	50841561	-	PPA0070	-	transcriptional regulator
66	 62.82	0	73685..76414	+	909	50841562	-	PPA0071	-	putative membrane transport protein
67	 64.77	+1	76411..78780	+	789	50841563	-	PPA0072	-	membrane associated protein
68	 61.76	0	78966..80411	-	481	50841564	-	PPA0073	-	hypothetical protein
69	 61.81	0	80414..81175	-	253	50841565	-	PPA0074	-	ABC transporter, ATP-binding protein
70	 58.06	0	81438..82250	+	270	50841566	-	PPA0075	-	hypothetical protein
71	 49.36	-2	82471..83481	+	336	50841567	-	PPA0076	-	periplasmic binding protein
72	 54.94	-1	83628..84650	+	340	50841568	-	PPA0077	-	ABC transporter
73	 53.65	-2	84643..85410	+	255	50841569	-	PPA0078	-	permease
74	 61.52	0	85493..86950	+	485	50841570	-	PPA0079	-	aldehyde dehydrogenase
75	 63.95	+1	86995..88281	+	428	50841571	-	PPA0080	-	chloride channel protein
76	 58.39	0	88336..90702	+	788	50841572	-	PPA0081	-	carbohydrate phosphorylase
77	 65.25	+1	91144..91779	-	211	50841573	-	PPA0082	-	hypothetical protein
78	 63.28	+1	91967..94183	-	738	50841574	-	PPA0083	-	hypothetical protein
79	 63.45	+1	94313..95524	-	403	50841575	-	PPA0084	-	ROK family transcriptional regulator
80	 58.71	0	95889..97232	+	447	50841576	-	PPA0085	-	periplasmic protein
81	 56.52	-1	97276..98211	+	311	50841577	-	PPA0086	-	putative permease protein
82	 59.86	0	98211..99092	+	293	50841578	-	PPA0087	-	permease protein
83	 65.95	+1	99230..100351	+	373	50841579	-	PPA0088	-	putative transcriptional regulator
84	 64.70	+1	100341..102530	+	729	50841580	-	PPA0089	-	glycosyl hydrolase family protein
85	 61.21	0	102809..104017	+	402	50841581	pfkA	PPA0090	-	6-phosphofructokinase
86	 65.12	+1	104055..104636	-	193	50841582	-	PPA0091	-	putative regulatory protein
87	 62.62	0	104633..107374	-	913	50841583	-	PPA0092	-	hypothetical protein
88	 64.81	+1	107367..108500	-	377	50841584	-	PPA0093	-	hypothetical protein
89	 53.84	-1	108930..110402	+	490	50841585	aspA	PPA0094	-	aspartate ammonia-lyase
90	 58.12	0	110409..111707	+	432	50841586	-	PPA0095	-	anaerobic C4-dicarboxylate transporter
91	 57.73	0	111808..112098	-	96	50841587	-	PPA0096	-	hypothetical protein
92	 59.37	0	112227..113678	+	483	50841588	-	PPA0097	-	catalase
93	 66.67	+2	113716..115461	-	581	50841589	-	PPA0098	-	ABC transporter
94	 67.12	+2	115458..117224	-	588	50841590	-	PPA0099	-	ABC transporter
95	 65.15	+1	117221..118207	-	328	50841591	-	PPA0100	-	magnesium-chelatase subunit ChlI
96	 66.82	+2	118209..120173	-	654	50841592	-	PPA0101	-	magnesium-chelatase 67 kDa subunit
97	 65.52	+1	120173..124195	-	1340	50841593	-	PPA0102	-	cobalamin biosynthesis protein CobN
98	 66.85	+2	124075..125169	-	364	50841594	-	PPA0103	-	radical SAM superfamily protein
99	 67.47	+2	125166..126167	-	333	50841595	-	PPA0104	-	ABC transporter
100	 65.18	+1	126164..127303	-	379	50841596	-	PPA0105	-	transporter (putative iron (III) permease)
60.05	MEAN

3.20	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.