IslandPath Analysis: Propionibacterium acnes KPA171202



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 60.05   STD DEV: 3.20
Propionibacterium acnes KPA171202, complete genome - 1..2560265
2297 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
272	 61.31	0	329279..330286	-	335	50841768	-	PPA0279	-	hypothetical protein
273	 56.84	-1	330283..331269	-	328	50841769	-	PPA0280	-	membrane spanning protein
274	 60.65	0	331266..332030	-	254	50841770	-	PPA0281	-	membrane spanning protein
275	 60.57	0	332153..332923	+	256	50841771	-	PPA0282	-	hypothetical protein
276	 60.39	0	332920..333540	+	206	50841772	-	PPA0283	-	allophanate hydrolase subunit 1
277	 62.64	0	333537..334406	+	289	50841773	-	PPA0284	-	allophanate hydrolase subunit 2
278	 58.67	0	334570..336057	+	495	50841774	-	PPA0285	-	putative sugar transporter
279	 59.33	0	336125..337024	+	299	50841775	-	PPA0286	-	putative cell division inhibitor
280	 60.07	0	337021..337929	+	302	50841776	-	PPA0287	-	membrane spanning protein
281	 60.18	0	337947..338501	-	184	50841777	-	PPA0288	-	hypothetical protein
282	 63.17	0	338575..339231	-	218	50841778	-	PPA0289	-	putative two component response regulator
283	 62.12	0	339311..340543	-	410	50841779	-	PPA0290	-	putative two-component sensor kinase
284	 56.20	-1	340694..341314	+	206	50841780	-	PPA0291	-	hypothetical protein
285	 58.99	0	341497..342408	-	303	50841781	-	PPA0292	-	hypothetical protein
286	 64.35	+1	342413..342886	-	157	50841782	-	PPA0293	-	PTS system, glucose/sucrose specific IIA subunit
287	 58.57	0	342898..344577	-	559	50841783	-	PPA0294	-	PTS system sugar-specific EII component
288	 58.11	0	345249..346568	-	439	50841784	-	PPA0295	-	putative sugar transporter
289	 58.69	0	346613..347653	-	346	50841785	-	PPA0296	-	4-hydroxythreonine-4-phosphate dehydrogenase 2
290	 61.16	0	347729..349000	-	423	50841786	-	PPA0298	-	hypothetical protein
291	 60.54	0	349234..350163	-	309	50841787	-	PPA0299	-	DeoR family transcriptional regulator
292	 63.70	+1	350176..351051	-	291	50841788	-	PPA0300	-	A/G-specific adenine glycosylase
293	 64.91	+1	351044..352354	-	436	50841789	-	PPA0301	-	glutamate-1-semialdehyde 2,1-aminomutase, HemL
294	 61.89	0	352402..353448	-	348	50841790	-	PPA0302	-	delta-aminolevulinic acid dehydratase
295	 62.67	0	353478..354203	-	241	50841791	-	PPA0303	-	uroporphyrinogen-III synthase, HemD
296	 62.67	0	354200..355300	-	366	50841792	hemC	PPA0304	-	porphobilinogen deaminase
297	 64.39	+1	355251..356699	-	482	50841793	-	PPA0305	-	putative protoporphyrinogen oxidase, HemY
298	 62.45	0	356696..357976	-	426	50841794	-	PPA0306	-	uroporphyrinogen decarboxylase, HemE
299	 62.40	0	357887..359221	+	444	50841795	-	PPA0307	-	glutamyl-tRNA reductase, HemA
300	 61.94	0	359218..361269	+	683	50841796	-	PPA0308	-	ferrochelatase, HemH
301	 59.72	0	361341..361973	+	210	50841797	-	PPA0310	-	hypothetical protein
302	 59.61	0	362009..363043	-	344	50841798	-	PPA0311	-	DNA integrity scanning protein DisA
303	 61.73	0	363162..364559	-	465	50841799	-	PPA0312	-	DNA repair protein RadA
304	 58.77	0	364625..366271	-	548	50841800	-	PPA0313	-	malate dehydrogenase
305	 61.19	0	366335..366973	-	212	50841801	-	PPA0314	-	hypothetical protein
306	 57.77	0	367125..368012	+	295	50841802	-	PPA0315	-	putative AP endonuclease family protein
307	 58.97	0	368075..368971	+	298	50841803	-	PPA0316	-	putative proline dehydrogenase
308	 61.89	0	368971..369807	+	278	50841804	-	PPA0317	-	putative protease
309	 60.96	0	369582..370895	+	437	50841805	-	PPA0318	-	aspartate-semialdehyde dehydrogenase
310	 61.74	0	370892..371683	+	263	50841806	-	PPA0319	-	putative delta-1-pyrroline-5-carboxylate reductase
311	 58.82	0	371819..371920	+	33	50841807	-	PPA0320	-	hypothetical protein
312	 58.48	0	371940..372281	+	113	50841808	-	PPA0321	-	hypothetical protein
313	 60.66	0	372405..374120	+	571	50841809	-	PPA0323	-	uroporphyrinogen-III synthase, HemD
314	 61.73	0	374191..374859	+	222	50841810	-	PPA0324	-	putative phosphoglycerate mutase
315	 59.47	0	374856..375425	+	189	50841811	-	PPA0325	-	hypothetical protein
316	 60.89	0	375422..376183	+	253	50841812	-	PPA0326	-	cytochrome c biogenesis protein
317	 59.06	0	376261..377772	+	503	50841813	-	PPA0327	-	putative c-type cytochrome biogenesis protein
318	 60.88	0	377769..378650	+	293	50841814	-	PPA0328	-	putative cytochrome c biogenesis protein
319	 60.18	0	378637..380100	+	487	50841815	-	PPA0329	-	putative sigma subunit
320	 62.89	0	380112..380906	-	264	50841816	-	PPA0330	-	putative short chain dehydrogenase
321	 43.39	-2	381123..382196	-	357	50841817	-	PPA0331	-	hypothetical protein
322	 61.42	0	382407..383111	-	234	50841818	-	PPA0332	-	hypothetical protein
323	 60.46	0	383235..384635	+	466	50841819	-	PPA0333	-	mycothione/glutathione reductase
324	 59.59	0	384718..385734	-	338	50841820	-	PPA0334	-	putative ABC-type transporter, periplasmic component
325	 61.00	0	385746..386504	-	252	50841821	-	PPA0335	-	ABC-type transporter, ATPase component
326	 63.35	+1	386501..387526	-	341	50841822	-	PPA0336	-	putative permease, FecCD transport family protein
327	 63.85	+1	387764..388651	-	295	50841823	-	PPA0337	-	siderophore-interacting protein
328	 60.10	0	388878..389654	-	258	50841824	-	PPA0338	-	phosphate transport ATP-binding protein PstB
329	 59.22	0	389673..390599	-	308	50841825	-	PPA0339	-	phosphate transport system permease protein PstA
330	 60.30	0	390596..391600	-	334	50841826	-	PPA0340	-	putative phosphate transport system permease protein PstC
331	 60.68	0	391709..392860	-	383	50841827	-	PPA0341	-	phosphate-binding protein
332	 58.81	0	393033..393974	-	313	50841828	-	PPA0342	-	hypothetical protein
333	 61.06	0	393982..396087	-	701	50841829	-	PPA0343	-	polyphosphate kinase
334	 59.80	0	396209..396922	-	237	50841830	-	PPA0344	-	transcriptional regulatory protein
335	 61.81	0	396981..397865	+	294	50841831	-	PPA0345	-	hypothetical protein
336	 64.38	+1	397880..398317	-	145	50841832	-	PPA0346	-	D-tyrosyl-tRNA deacylase
337	 61.88	0	398513..399013	+	166	50841833	-	PPA0347	-	hypothetical protein
338	 64.23	+1	399015..399956	+	313	50841834	-	PPA0348	-	putative glycine cleavage T-protein
339	 51.88	-2	399997..401382	+	461	50841835	-	PPA0349	-	putative glycosyltransferase
340	 61.92	0	401405..402142	-	245	50841836	-	PPA0350	-	short chain dehydrogenase
341	 64.05	+1	402218..403936	-	572	50841837	-	PPA0351	-	putative phosphoenolpyruvate-protein kinase
342	 64.42	+1	403896..404162	-	88	50841838	-	PPA0352	-	phosphocarrier protein HPr
343	 58.92	0	404249..405061	+	270	50841839	-	PPA0353	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
344	 61.14	0	405058..405564	+	168	50841840	ispF	PPA0354	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
345	 57.28	0	405511..405915	-	134	50841841	-	PPA0355	-	putative PTS family protein
346	 56.46	-1	406113..406406	+	97	50841842	-	PPA0356	-	putative phosphotransferase enzyme
347	 53.91	-1	406490..406975	-	161	50841843	-	PPA0357	-	putative transcriptional regulator
348	 59.08	0	407115..407720	+	201	50841844	-	PPA0358	-	hypothetical protein
349	 59.77	0	407773..408453	-	226	50841845	-	PPA0359	-	response regulator
350	 60.32	0	408450..409631	-	393	50841846	-	PPA0360	-	putative sensor kinase
351	 59.84	0	409714..410460	+	248	50841847	-	PPA0361	-	putative phosphate transport system protein
352	 58.82	0	410606..411676	+	356	50841848	-	PPA0363	-	polysaccharide deacetylase
353	 62.13	0	411768..412517	-	249	50841849	-	PPA0364	-	phosphoglyceromutase
354	 57.95	0	412642..413100	-	152	50841850	-	PPA0365	-	putative PTS system
355	 59.52	0	413345..413638	-	97	50841851	-	PPA0366	-	putative phosphotransferase enzyme
356	 59.34	0	413845..414840	-	331	50841852	-	PPA0367	-	L-asparaginase I
357	 60.11	0	414841..416289	-	482	50841853	-	PPA0368	-	amino acid permease
358	 62.94	0	416665..418140	-	491	50841854	glyA	PPA0369	-	serine hydroxymethyltransferase
359	 63.03	0	418254..419354	-	366	50841855	-	PPA0370	-	carbohydrate kinase
360	 67.13	+2	419351..419998	-	215	50841856	-	PPA0371	-	KHG/KDPG aldolase
361	 63.58	+1	420201..420977	+	258	50841857	fabG	PPA0372	-	3-ketoacyl-(acyl-carrier-protein) reductase
362	 64.39	+1	420943..421338	+	131	50841858	-	PPA0373	-	putative oxidoreductase
363	 61.64	0	423025..423681	+	218	50841859	-	PPA0376	-	putative glycosyl hydrolase
364	 66.67	+2	423884..424591	-	235	50841860	-	PPA0377	-	hypothetical protein
365	 62.91	0	424584..425408	-	274	50841861	-	PPA0378	-	putative oxidoreductase
366	 65.36	+1	425575..425880	+	101	50841862	-	PPA0379	-	putative dehydrogenase
367	 64.95	+1	425934..428375	-	813	50841863	-	PPA0380	-	hyalorunate lyase
368	 64.26	+1	428537..429409	+	290	50841864	-	PPA0381	-	hypothetical protein
369	 64.15	+1	429195..430067	+	290	50841865	-	PPA0382	-	hypothetical protein
370	 65.52	+1	430312..431268	-	318	50841866	-	PPA0383	-	putative tRNA/rRNA methyltransferase
371	 60.08	0	431282..432754	-	490	50841867	cysS	PPA0384	-	cysteinyl-tRNA synthetase
60.05	MEAN

3.20	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.