IslandPath Analysis: Propionibacterium acnes KPA171202



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 60.05   STD DEV: 3.20
Propionibacterium acnes KPA171202, complete genome - 1..2560265
2297 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
178	 59.10	0	225800..227227	-	475	50841674	-	PPA0185	-	putative penicillin-binding protein
179	 59.34	0	227224..228615	-	463	50841675	-	PPA0186	-	putative cell division protein
180	 60.15	0	228612..230099	-	495	50841676	-	PPA0187	-	putative protein phosphatase
181	 59.51	0	230103..230591	-	162	50841677	-	PPA0188	-	hypothetical protein
182	 61.01	0	230594..231283	-	229	50841678	-	PPA0189	-	hypothetical protein
183	 65.52	+1	231455..232498	-	347	50841679	-	PPA0190	-	hypothetical protein
184	 62.31	0	232572..233534	-	320	50841680	-	PPA0191	-	hypothetical protein
185	 55.70	-1	234127..234828	-	233	50841681	-	PPA0192	-	hypothetical protein
186	 58.33	0	234838..235749	-	303	50841682	-	PPA0193	-	hypothetical protein
187	 63.90	+1	235924..236754	-	276	50841683	-	PPA0194	-	putative RHS related protein
188	 64.22	+1	236696..237961	-	421	50841684	-	PPA0195	-	putative RHS-family protein
189	 63.09	0	237966..239921	-	651	50841685	-	PPA0196	-	RHS-family protein
190	 57.61	0	240186..241112	+	308	50841686	-	PPA0197	-	hypothetical protein
191	 53.70	-1	241522..242385	+	287	50841687	-	PPA0198	-	hypothetical protein
192	 45.19	-2	243319..243765	-	148	50841688	-	PPA2367	-	hypothetical protein
193	 52.36	-2	243747..244361	-	204	50841689	-	PPA2368	-	hypothetical protein
194	 44.74	-2	244591..245037	-	148	50841690	-	PPA2394	-	hypothetical protein
195	 60.06	0	245019..247880	-	953	50841691	-	PPA0199	-	RHS-family protein
196	 60.22	0	247886..250678	-	930	50841692	-	PPA0200	-	RHS-family protein
197	 53.94	-1	250798..251520	-	240	50841693	-	PPA0201	-	hypothetical protein
198	 63.11	0	251890..252255	-	121	50841694	-	PPA0202	-	putative heat shock protein
199	 59.79	0	252517..252894	+	125	50841695	-	PPA0203	-	hypothetical protein
200	 63.34	+1	253133..255835	+	900	161621801	-	PPA0204	-	DNA polymerase III subunits gamma and tau
201	 63.58	+1	255945..256268	+	107	50841697	-	PPA0205	-	hypothetical protein
202	 59.24	0	256299..256904	+	201	50841698	-	PPA0206	-	putative recombination protein RecR
203	 59.03	0	257012..257587	+	191	50841699	-	PPA0207	-	transcriptional regulator
204	 63.98	+1	257593..258375	+	260	50841700	-	PPA0208	-	ABC transporter ATP-binding protein
205	 61.67	0	258375..261014	+	879	50841701	-	PPA0209	-	putative permease
206	 63.45	+1	261018..262853	-	611	50841702	-	PPA0210	-	membrane spanning protein
207	 61.92	0	262964..263764	+	266	50841703	-	PPA0211	-	putative hydrolase
208	 62.96	0	263774..264583	+	269	50841704	-	PPA0212	-	putative hydrolase
209	 55.67	-1	264701..265600	+	299	50841705	-	PPA0213	-	putative ABC transporter
210	 53.90	-1	265597..266802	+	401	50841706	-	PPA0214	-	hypothetical protein
211	 57.70	0	266814..267404	+	196	50841707	-	PPA0215	-	hypothetical protein
212	 61.61	0	268050..271394	+	1114	50841708	ileS	PPA0216	-	isoleucyl-tRNA synthetase
213	 63.93	+1	271509..272459	-	316	50841709	-	PPA0217	-	membrane associated protein
214	 62.99	0	272440..272847	-	135	50841710	-	PPA2396	-	hypothetical protein
215	 50.56	-2	272911..274326	-	471	50841711	-	PPA0218	-	putative transport protein
216	 60.04	0	274536..275456	-	306	50841712	-	PPA0219	-	putative oxidoreductase
217	 60.67	0	275563..275862	+	99	50841713	-	PPA0220	-	putative regulatory protein
218	 63.60	+1	276029..276484	+	151	50841714	-	PPA0221	-	putative translation initiation inhibitor
219	 63.68	+1	276567..277268	-	233	50841715	-	PPA0222	-	putative transcriptional regulator
220	 62.46	0	277186..278112	+	308	50841716	-	PPA0223	-	putative endonuclease III
221	 62.07	0	278109..278696	+	195	50841717	-	PPA0224	-	hypothetical protein
222	 62.86	0	278693..279349	+	218	50841718	-	PPA0225	-	putative NTP pyrophosphohydrolase
223	 60.34	0	279430..279966	-	178	50841719	-	PPA0226	-	hypothetical protein
224	 60.10	0	280063..281325	-	420	50841720	-	PPA0227	-	putative sodium:proton antiporter
225	 62.19	0	281493..282452	-	319	50841721	-	PPA0228	-	putative methyltransferase
226	 63.29	+1	282461..283438	+	325	50841722	-	PPA0229	-	hypothetical protein
227	 62.90	0	283435..284601	+	388	50841723	-	PPA0230	-	putative secretory protein
228	 63.55	+1	284598..285368	+	256	50841724	-	PPA0231	-	hypothetical protein
229	 62.73	0	285404..286114	+	236	50841725	-	PPA0232	-	hypothetical protein
230	 59.38	0	286323..286610	+	95	50841726	-	PPA0233	-	hypothetical protein
231	 65.40	+1	286703..287017	+	104	50841727	-	PPA0234	-	hypothetical protein
232	 61.23	0	287017..287421	+	134	50841728	-	PPA0235	-	hypothetical protein
233	 55.27	-1	287537..287773	+	78	50841729	-	PPA0236	-	hypothetical protein
234	 62.74	0	287834..290098	-	754	50841730	-	PPA0237	-	putative helicase
235	 61.92	0	290122..291639	+	505	50841731	-	PPA0238	-	putative transferase
236	 60.76	0	291732..292019	+	95	50841732	-	PPA0240	-	hypothetical protein
237	 61.83	0	292242..295031	+	929	50841733	-	PPA0241	-	DNA topoisomerase I
238	 62.63	0	295033..296520	+	495	50841734	-	PPA0242	-	hypothetical protein
239	 62.30	0	296471..297157	+	228	50841735	-	PPA0243	-	putative thymidylate kinase
240	 61.75	0	297213..298412	+	399	50841736	-	PPA0244	-	DNA polymerase III subunit delta'
241	 63.82	+1	298544..299350	+	268	50841737	-	PPA0245	-	hypothetical protein
242	 63.05	0	299425..300087	+	220	50841738	-	PPA0246	-	hypothetical protein
243	 58.94	0	300104..301786	+	560	50841739	-	PPA0247	-	putative hydrolase
244	 61.56	0	301875..302207	+	110	50841740	-	PPA0248	-	hypothetical protein
245	 64.04	+1	302241..303917	-	558	50841741	-	PPA0249	-	hypothetical protein
246	 60.89	0	304329..305678	+	449	50841742	-	PPA0250	-	putative flavin-containing amine oxidase
247	 62.68	0	305982..307010	+	342	50841743	-	PPA0251	-	hypothetical protein
248	 62.61	0	307028..307495	-	155	50841744	-	PPA0252	-	hypothetical protein
249	 63.42	+1	308567..309613	-	348	50841745	-	PPA0255	-	hypothetical protein
250	 58.93	0	309691..310323	-	210	50841746	-	PPA0256	-	inorganic pyrophosphatase
251	 60.87	0	310315..311745	+	476	50841747	-	PPA0257	-	putative carboxypeptidase
252	 67.63	+2	311745..312680	+	311	50841748	-	PPA0258	-	hypothetical protein
253	 55.68	-1	312708..313262	+	184	50841749	-	PPA0259	-	putative hypoxanthine phosphoribosyltransferase
254	 60.17	0	313404..315557	+	717	50841750	-	PPA0260	-	putative cell division protein FtsH
255	 62.85	0	315622..316197	+	191	50841751	-	PPA0261	-	GTP cyclohydrolase I
256	 64.97	+1	316270..316563	+	97	50841752	-	PPA0262	-	hypothetical protein
257	 56.19	-1	316805..317911	+	368	50841753	-	PPA0263	-	putative outer membrane protein A
258	 55.87	-1	317911..318549	+	212	50841754	-	PPA0264	-	hypothetical protein
259	 58.33	0	318444..318707	-	87	50841755	-	PPA0265	-	hypothetical protein
260	 56.13	-1	318756..319277	+	173	50841756	-	PPA0266	-	hypothetical protein
261	 62.03	0	319307..319759	+	150	50841757	-	PPA0267	-	hypothetical protein
262	 58.05	0	319949..320923	+	324	50841758	-	PPA0268	-	hypothetical protein
263	 56.49	-1	320859..321536	+	225	50841759	-	PPA0270	-	hypothetical protein
264	 61.35	0	321592..322437	+	281	50841760	-	PPA0271	-	dihydropteroate synthase
265	 60.06	0	322498..322860	+	120	50841761	-	PPA0272	-	dihydroneopterin aldolase
266	 60.93	0	322857..323414	+	185	50841762	-	PPA0273	-	putative hydroxymethyldihydropteridine pyrophosphokinase
267	 59.78	0	323411..323947	+	178	50841763	-	PPA0274	-	hypothetical protein
268	 59.88	0	324030..324707	+	225	50841764	-	PPA0275	-	hypothetical protein
269	 58.10	0	324784..325974	-	396	50841765	-	PPA0276	-	putative NADH dehydrogenase
270	 59.43	0	326113..326430	+	105	50841766	-	PPA0277	-	hypothetical protein
271	 60.75	0	326692..329226	+	844	50841767	-	PPA0278	-	Clp family ATP-binding protease
272	 61.31	0	329279..330286	-	335	50841768	-	PPA0279	-	hypothetical protein
273	 56.84	-1	330283..331269	-	328	50841769	-	PPA0280	-	membrane spanning protein
274	 60.65	0	331266..332030	-	254	50841770	-	PPA0281	-	membrane spanning protein
275	 60.57	0	332153..332923	+	256	50841771	-	PPA0282	-	hypothetical protein
276	 60.39	0	332920..333540	+	206	50841772	-	PPA0283	-	allophanate hydrolase subunit 1
277	 62.64	0	333537..334406	+	289	50841773	-	PPA0284	-	allophanate hydrolase subunit 2
60.05	MEAN

3.20	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.