IslandPath Analysis: Propionibacterium acnes KPA171202



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 60.05   STD DEV: 3.20
Propionibacterium acnes KPA171202, complete genome - 1..2560265
2297 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2182	 59.84	0	2427460..2428806	+	448	50843678	-	PPA2244	-	replicative DNA helicase
2183	 60.98	0	2428857..2429858	+	333	50843679	-	PPA2245	-	zinc-binding dehydrogenase
2184	 65.09	+1	2430005..2430322	+	105	50843680	-	PPA2246	-	hypothetical protein
2185	 63.54	+1	2430319..2430894	+	191	50843681	-	PPA2247	-	3-methyladenine DNA glycosylase
2186	 59.87	0	2431221..2432471	-	416	50843682	glpC	PPA2248	-	sn-glycerol-3-phosphate dehydrogenase subunit C
2187	 63.76	+1	2432474..2433817	-	447	50843683	-	PPA2249	-	anaerobic glycerol-3-phosphate dehydrogenase subunit B
2188	 61.96	0	2433814..2435448	-	544	50843684	-	PPA2250	-	anaerobic glycerol-3-phosphate dehydrogenase subunit A
2189	 60.14	0	2435865..2436830	-	321	50843685	-	PPA2251	-	D-isomer specific 2-hydroxyacid dehydrogenase, putative D-3-phosphoglycerate dehydrogenase
2190	 60.38	0	2436888..2437412	+	174	50843686	-	PPA2252	-	MarR family transcriptional regulator
2191	 62.27	0	2437409..2439136	+	575	50843687	-	PPA2253	-	putative chloride channel
2192	 60.98	0	2439139..2440545	-	468	50843688	-	PPA2254	-	amino acid permease, putative GABA permease
2193	 59.74	0	2440661..2441194	-	177	50843689	-	PPA2256	-	MarR family transcriptional regulator
2194	 60.34	0	2441486..2442670	+	394	50843690	-	PPA2257	-	putative DNA repair exonuclease or phosphoesterase
2195	 60.15	0	2442667..2445273	+	868	50843691	-	PPA2258	-	putative ATPase involved in DNA repair
2196	 62.14	0	2445333..2446679	-	448	50843692	-	PPA2259	-	hypothetical protein
2197	 59.26	0	2446679..2447326	-	215	50843693	-	PPA2260	-	TetR family transcriptional regulator
2198	 60.60	0	2447463..2448335	+	290	50843694	-	PPA2261	-	4-amino-4-deoxychorismate lyase
2199	 60.33	0	2448335..2448823	+	162	50843695	-	PPA2262	-	putative transcriptional regulator
2200	 59.15	0	2448836..2449234	-	132	50843696	-	PPA2263	-	hypothetical protein
2201	 60.34	0	2449264..2449800	-	178	50843697	-	PPA2264	-	hypothetical protein
2202	 56.20	-1	2449797..2450417	-	206	50843698	-	PPA2265	-	hypothetical protein
2203	 62.17	0	2450920..2452989	+	689	50843699	nadE	PPA2266	-	NAD synthetase
2204	 62.44	0	2453168..2455414	+	748	50843700	-	PPA2267	-	6-phosphofructokinase, type C
2205	 57.05	0	2455481..2456593	-	370	50843701	-	PPA2268	-	alanine dehydrogenase
2206	 54.60	-1	2456880..2458379	+	499	50843702	-	PPA2269	-	D-serine/D-alanine/glycine transporter
2207	 63.73	+1	2458479..2458682	+	67	50843703	-	PPA2374	-	hypothetical protein
2208	 56.51	-1	2458679..2458993	+	104	50843704	-	PPA2375	-	hypothetical protein
2209	 55.43	-1	2459052..2459327	+	91	50843705	-	PPA2377	-	hypothetical protein
2210	 58.73	0	2459363..2459488	+	41	50843706	-	PPA2376	-	hypothetical protein
2211	 58.18	0	2459612..2460895	+	427	50843707	-	PPA2270	-	putative secreted lipoprotein
2212	 65.53	+1	2461136..2462632	+	498	50843708	-	PPA2271	-	lipoprotein A family protein
2213	 57.89	0	2462927..2464213	+	428	50843709	-	PPA2272	-	citrate synthase 1
2214	 60.62	0	2464452..2465477	+	341	50843710	-	PPA2273	-	adenosine deaminase
2215	 57.05	0	2465524..2466636	-	370	50843711	-	PPA2274	-	alanine dehydrogenase
2216	 59.33	0	2466810..2467817	-	335	50843712	-	PPA2275	-	AsnC family transcriptional regulator
2217	 63.70	+1	2468111..2469154	+	347	50843713	-	PPA2276	-	oxidoreductase
2218	 61.21	0	2469166..2469513	+	115	50843714	-	PPA2277	-	hypothetical protein
2219	 62.80	0	2469510..2470931	+	473	50843715	-	PPA2278	-	putative threonine synthase / cystathionine beta-synthase
2220	 63.36	+1	2470931..2471353	+	140	50843716	-	PPA2279	-	D-ornithine aminomutase S component
2221	 62.92	0	2471350..2473668	+	772	50843717	-	PPA2280	-	D-ornithine aminomutase E component
2222	 64.01	+1	2473674..2475104	+	476	50843718	-	PPA2281	-	methylaspartate mutase
2223	 60.06	0	2475101..2476189	+	362	50843719	-	PPA2282	-	amino acid racemase
2224	 58.47	0	2476228..2477703	+	491	50843720	-	PPA2283	-	D-serine/D-alanine/glycine transporter
2225	 56.90	0	2478067..2479581	+	504	50843721	-	PPA2284	-	D-serine/D-alanine/glycine transporter
2226	 58.78	0	2479808..2480935	+	375	50843722	-	PPA2285	-	alanine racemase 1
2227	 58.67	0	2481125..2482549	-	474	50843723	-	PPA2286	-	phosphoglucomutase/phosphomannomutase
2228	 60.79	0	2482666..2483856	-	396	50843724	-	PPA2287	-	galactokinase
2229	 56.51	-1	2483853..2484689	-	278	50843725	-	PPA2288	-	glucose-1-phosphate thymidylyltransferase
2230	 59.66	0	2484814..2485641	+	275	50843726	-	PPA2289	-	hypothetical protein
2231	 58.33	0	2485647..2485838	-	63	50843727	-	PPA2290	-	hypothetical protein
2232	 60.21	0	2485835..2486701	-	288	50843728	-	PPA2291	-	hypothetical protein
2233	 61.27	0	2486987..2488393	+	468	50843729	fumC	PPA2292	-	fumarate hydratase
2234	 56.47	-1	2488614..2489525	-	303	50843730	-	PPA2293	-	binding-protein-dependent transport system
2235	 55.78	-1	2489527..2490435	-	302	50843731	-	PPA2294	-	binding-protein-dependent transport system
2236	 59.18	0	2490658..2491992	-	444	50843732	-	PPA2295	-	solute-binding lipoprotein
2237	 61.81	0	2492189..2493196	+	335	50843733	-	PPA2296	-	transcription regulator CelR
2238	 62.19	0	2493205..2493897	-	230	50843734	-	PPA2297	-	hypothetical protein
2239	 58.39	0	2494023..2494880	+	285	50843735	-	PPA2298	-	putative mechanosensitive ion channel
2240	 61.54	0	2495050..2496258	-	402	50843736	-	PPA2299	-	glycerate kinase
2241	 61.57	0	2496309..2496563	+	84	50843737	-	PPA2300	-	hypothetical protein
2242	 60.17	0	2496645..2498168	+	507	50843738	-	PPA2301	-	putative RNA nucleotidyltransferase
2243	 59.24	0	2498211..2500352	+	713	50843739	-	PPA2302	-	hypothetical protein
2244	 61.15	0	2500420..2502231	+	603	50843740	-	PPA2303	-	serine-threonine protein kinase
2245	 60.14	0	2502581..2504128	-	515	50843741	-	PPA2304	-	glycerol kinase 2
2246	 60.96	0	2504189..2504941	-	250	50843742	-	PPA2305	-	glycerol uptake facilitator protein
2247	 56.96	0	2505130..2506077	+	315	50843743	-	PPA2306	-	transcriptional regulator
2248	 59.03	0	2506148..2507587	-	479	50843744	-	PPA2307	-	trypsin-like serine protease
2249	 59.67	0	2507691..2508362	-	223	50843745	-	PPA2308	-	alpha-L-arabinofuranosidase
2250	 63.82	+1	2508494..2509546	+	350	50843746	-	PPA2309	-	thioredoxin reductase
2251	 60.14	0	2510029..2510916	-	295	50843747	-	PPA2310	-	putative RNA pseudouridylate synthase
2252	 60.98	0	2511243..2512490	+	415	50843748	-	PPA2311	-	putative sucrose symporter
2253	 61.72	0	2512492..2513421	+	309	50843749	-	PPA2312	-	lipase/esterase
2254	 62.79	0	2513545..2513982	-	145	50843750	-	PPA2313	-	OsmC-like protein
2255	 59.58	0	2513992..2514471	-	159	50843751	-	PPA2314	-	thioredoxin
2256	 60.49	0	2514559..2515626	-	355	50843752	-	PPA2315	-	glycerol-3-phosphate dehydrogenase [NAD(P)+]
2257	 63.13	0	2516637..2518700	-	687	50843753	-	PPA2318	-	transketolase
2258	 62.19	0	2518837..2520600	-	587	50843754	-	PPA2319	-	ribulokinase
2259	 62.56	0	2520619..2521983	-	454	50843755	-	PPA2320	-	L-arabinose utilization protein, glycerol dehydrogenase
2260	 59.25	0	2521967..2523571	-	534	50843756	-	PPA2321	-	sugar kinase, putative xylulose kinase
2261	 60.26	0	2523628..2524485	-	285	50843757	-	PPA2322	-	L-arabinose operon protein, hydrolase
2262	 60.99	0	2524508..2525653	-	381	50843758	-	PPA2323	-	hypothetical protein
2263	 59.42	0	2525731..2526213	-	160	50843759	-	PPA2324	-	ribose 5-phosphate isomerase
2264	 60.89	0	2526430..2526948	-	172	50843760	-	PPA2325	-	L-ribulose-5-phosphate 4-epimerase
2265	 62.45	0	2527000..2527806	-	268	50843761	-	PPA2326	-	DeoR family transcriptional regulator
2266	 52.98	-2	2528080..2529153	-	357	50843762	-	PPA2327	-	mannonate dehydratase
2267	 57.80	0	2529156..2530745	-	529	50843763	-	PPA2328	-	D-mannonate oxidoreductase
2268	 58.88	0	2530761..2532173	-	470	50843764	-	PPA2329	-	glucuronate isomerase
2269	 58.63	0	2532238..2533245	-	335	50843765	-	PPA2330	-	LacI family transcription regulator
2270	 55.44	-1	2533422..2534846	+	474	50843766	-	PPA2331	-	glucuronide permease
2271	 61.29	0	2534866..2537358	+	830	50843767	-	PPA2332	-	putative glucosidase
2272	 60.38	0	2537391..2539172	+	593	50843768	-	PPA2333	-	beta-D-glucuronidase
2273	 61.11	0	2539276..2542677	+	1133	50843769	-	PPA2334	-	hypothetical protein
2274	 60.79	0	2542812..2543645	+	277	50843770	-	PPA2335	-	hypothetical protein
2275	 59.10	0	2543591..2544277	-	228	50843771	-	PPA2336	-	hypothetical protein
2276	 58.87	0	2544421..2545818	+	465	50843772	-	PPA2337	-	aminotransferase
2277	 58.43	0	2546113..2547096	+	327	50843773	-	PPA2338	-	D-alanine--D-alanine ligase B
2278	 59.59	0	2547071..2547805	+	244	50843774	-	PPA2339	-	membrane-associated protein
2279	 55.67	-1	2547802..2548374	+	190	50843775	-	PPA2340	-	membrane-associated protein
2280	 54.72	-1	2548632..2549552	-	306	50843776	-	PPA2341	-	chromosome partitioning protein ParB
2281	 56.64	-1	2549555..2550541	-	328	50843777	-	PPA2342	-	chromosome partitioning protein ParA
60.05	MEAN

3.20	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.