IslandPath Analysis: Propionibacterium acnes KPA171202



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 60.05   STD DEV: 3.20
Propionibacterium acnes KPA171202, complete genome - 1..2560265
2297 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2147	 63.44	+1	2390897..2391763	+	288	50843643	-	PPA2208	-	putative transcriptional regulator
2148	 63.97	+1	2391776..2392516	+	246	50843644	-	PPA2209	-	hypothetical protein
2149	 61.57	0	2392803..2394194	+	463	50843645	-	PPA2210	-	putative adhesion or S-layer protein
2150	 52.62	-2	2394342..2395829	-	495	50843646	-	PPA2211	-	purine cytosine permease-like protein
2151	 56.00	-1	2396185..2397534	-	449	50843647	-	PPA2212	-	putative electron transfer flavoprotein-quinone oxidoreductase (FixC protein)
2152	 56.88	0	2397552..2398430	-	292	50843648	-	PPA2213	-	putative electron transfer flavoprotein, carnitine metabolism (FixB protein)
2153	 56.30	-1	2398463..2399224	-	253	50843649	-	PPA2214	-	putative electron transfer flavoprotein (FixA protein)
2154	 55.10	-1	2399333..2400499	-	388	50843650	-	PPA2215	-	putative L-carnitine dehydratase
2155	 55.44	-1	2400537..2401685	-	382	50843651	-	PPA2216	-	acyl-CoA dehydrogenase
2156	 58.30	0	2401911..2402675	-	254	50843652	-	PPA2217	-	IclR family transcriptional regulator
2157	 61.31	0	2402789..2404114	-	441	50843653	-	PPA2218	-	hypothetical protein
2158	 57.80	0	2404111..2405385	-	424	50843654	-	PPA2219	-	seryl-tRNA synthetase
2159	 59.34	0	2405472..2406290	-	272	50843655	-	PPA2220	-	hypothetical protein
2160	 60.11	0	2407005..2407736	-	243	50843656	aat	PPA2221	-	leucyl/phenylalanyl-tRNA--protein transferase
2161	 59.00	0	2408177..2408437	+	86	50843657	-	PPA2222	-	hypothetical protein
2162	 66.13	+1	2408580..2408954	+	124	50843658	-	PPA2223	-	siderophore-interacting protein (fragment)
2163	 58.60	0	2409007..2409861	-	284	50843659	uppP	PPA2224	-	undecaprenyl pyrophosphate phosphatase
2164	 57.23	0	2410073..2410591	-	172	50843660	-	PPA2225	-	ferritin
2165	 60.25	0	2410922..2411560	-	212	50843661	-	PPA2226	-	hypothetical protein
2166	 61.11	0	2411883..2412332	-	149	50843662	-	PPA2227	-	50S ribosomal protein L9
2167	 60.00	0	2412346..2412585	-	79	50843663	rpsR	PPA2228	-	30S ribosomal protein S18
2168	 61.44	0	2412712..2413266	-	184	50843664	-	PPA2229	-	single-strand DNA-binding protein
2169	 54.98	-1	2413394..2413684	-	96	50843665	rpsF	PPA2230	-	30S ribosomal protein S6
2170	 61.71	0	2414206..2414568	-	120	50843666	-	PPA2231	-	hypothetical protein
2171	 61.04	0	2414767..2415228	-	153	50843667	-	PPA2232	-	PTS system, fructose/mannitol specific IIA subunit
2172	 59.49	0	2415252..2416811	-	519	50843668	-	PPA2233	-	PTS system, fructose-specific IIBC component
2173	 59.48	0	2417121..2419055	-	644	50843669	-	PPA2234	-	putative long-chain-fatty-acid--CoA ligase/synthetase
2174	 62.57	0	2419172..2419927	-	251	50843670	-	PPA2235	-	endonuclease IV
2175	 61.60	0	2420039..2420848	+	269	50843671	-	PPA2236	-	short chain dehydrogenase
2176	 61.97	0	2420850..2421701	+	283	50843672	-	PPA2237	-	putative 1-acyl-sn-glycerol-3-phosphate acyltransferase
2177	 60.25	0	2421701..2422183	+	160	50843673	-	PPA2238	-	putative transcriptional regulator
2178	 58.46	0	2422254..2423447	-	397	50843674	-	PPA2239	-	hypothetical protein
2179	 61.53	0	2423727..2425985	-	752	50843675	-	PPA2240	-	cation-transporting ATPase
2180	 61.32	0	2426174..2426566	-	130	50843676	-	PPA2242	-	putative metal-associated protein (copper chaperone)
2181	 59.40	0	2426590..2426988	-	132	50843677	-	PPA2243	-	hypothetical protein
2182	 59.84	0	2427460..2428806	+	448	50843678	-	PPA2244	-	replicative DNA helicase
2183	 60.98	0	2428857..2429858	+	333	50843679	-	PPA2245	-	zinc-binding dehydrogenase
2184	 65.09	+1	2430005..2430322	+	105	50843680	-	PPA2246	-	hypothetical protein
2185	 63.54	+1	2430319..2430894	+	191	50843681	-	PPA2247	-	3-methyladenine DNA glycosylase
2186	 59.87	0	2431221..2432471	-	416	50843682	glpC	PPA2248	-	sn-glycerol-3-phosphate dehydrogenase subunit C
2187	 63.76	+1	2432474..2433817	-	447	50843683	-	PPA2249	-	anaerobic glycerol-3-phosphate dehydrogenase subunit B
2188	 61.96	0	2433814..2435448	-	544	50843684	-	PPA2250	-	anaerobic glycerol-3-phosphate dehydrogenase subunit A
2189	 60.14	0	2435865..2436830	-	321	50843685	-	PPA2251	-	D-isomer specific 2-hydroxyacid dehydrogenase, putative D-3-phosphoglycerate dehydrogenase
2190	 60.38	0	2436888..2437412	+	174	50843686	-	PPA2252	-	MarR family transcriptional regulator
2191	 62.27	0	2437409..2439136	+	575	50843687	-	PPA2253	-	putative chloride channel
2192	 60.98	0	2439139..2440545	-	468	50843688	-	PPA2254	-	amino acid permease, putative GABA permease
2193	 59.74	0	2440661..2441194	-	177	50843689	-	PPA2256	-	MarR family transcriptional regulator
2194	 60.34	0	2441486..2442670	+	394	50843690	-	PPA2257	-	putative DNA repair exonuclease or phosphoesterase
2195	 60.15	0	2442667..2445273	+	868	50843691	-	PPA2258	-	putative ATPase involved in DNA repair
2196	 62.14	0	2445333..2446679	-	448	50843692	-	PPA2259	-	hypothetical protein
2197	 59.26	0	2446679..2447326	-	215	50843693	-	PPA2260	-	TetR family transcriptional regulator
2198	 60.60	0	2447463..2448335	+	290	50843694	-	PPA2261	-	4-amino-4-deoxychorismate lyase
2199	 60.33	0	2448335..2448823	+	162	50843695	-	PPA2262	-	putative transcriptional regulator
2200	 59.15	0	2448836..2449234	-	132	50843696	-	PPA2263	-	hypothetical protein
2201	 60.34	0	2449264..2449800	-	178	50843697	-	PPA2264	-	hypothetical protein
2202	 56.20	-1	2449797..2450417	-	206	50843698	-	PPA2265	-	hypothetical protein
2203	 62.17	0	2450920..2452989	+	689	50843699	nadE	PPA2266	-	NAD synthetase
2204	 62.44	0	2453168..2455414	+	748	50843700	-	PPA2267	-	6-phosphofructokinase, type C
2205	 57.05	0	2455481..2456593	-	370	50843701	-	PPA2268	-	alanine dehydrogenase
2206	 54.60	-1	2456880..2458379	+	499	50843702	-	PPA2269	-	D-serine/D-alanine/glycine transporter
2207	 63.73	+1	2458479..2458682	+	67	50843703	-	PPA2374	-	hypothetical protein
2208	 56.51	-1	2458679..2458993	+	104	50843704	-	PPA2375	-	hypothetical protein
2209	 55.43	-1	2459052..2459327	+	91	50843705	-	PPA2377	-	hypothetical protein
2210	 58.73	0	2459363..2459488	+	41	50843706	-	PPA2376	-	hypothetical protein
2211	 58.18	0	2459612..2460895	+	427	50843707	-	PPA2270	-	putative secreted lipoprotein
2212	 65.53	+1	2461136..2462632	+	498	50843708	-	PPA2271	-	lipoprotein A family protein
2213	 57.89	0	2462927..2464213	+	428	50843709	-	PPA2272	-	citrate synthase 1
2214	 60.62	0	2464452..2465477	+	341	50843710	-	PPA2273	-	adenosine deaminase
2215	 57.05	0	2465524..2466636	-	370	50843711	-	PPA2274	-	alanine dehydrogenase
2216	 59.33	0	2466810..2467817	-	335	50843712	-	PPA2275	-	AsnC family transcriptional regulator
2217	 63.70	+1	2468111..2469154	+	347	50843713	-	PPA2276	-	oxidoreductase
2218	 61.21	0	2469166..2469513	+	115	50843714	-	PPA2277	-	hypothetical protein
2219	 62.80	0	2469510..2470931	+	473	50843715	-	PPA2278	-	putative threonine synthase / cystathionine beta-synthase
2220	 63.36	+1	2470931..2471353	+	140	50843716	-	PPA2279	-	D-ornithine aminomutase S component
2221	 62.92	0	2471350..2473668	+	772	50843717	-	PPA2280	-	D-ornithine aminomutase E component
2222	 64.01	+1	2473674..2475104	+	476	50843718	-	PPA2281	-	methylaspartate mutase
2223	 60.06	0	2475101..2476189	+	362	50843719	-	PPA2282	-	amino acid racemase
2224	 58.47	0	2476228..2477703	+	491	50843720	-	PPA2283	-	D-serine/D-alanine/glycine transporter
2225	 56.90	0	2478067..2479581	+	504	50843721	-	PPA2284	-	D-serine/D-alanine/glycine transporter
2226	 58.78	0	2479808..2480935	+	375	50843722	-	PPA2285	-	alanine racemase 1
2227	 58.67	0	2481125..2482549	-	474	50843723	-	PPA2286	-	phosphoglucomutase/phosphomannomutase
2228	 60.79	0	2482666..2483856	-	396	50843724	-	PPA2287	-	galactokinase
2229	 56.51	-1	2483853..2484689	-	278	50843725	-	PPA2288	-	glucose-1-phosphate thymidylyltransferase
2230	 59.66	0	2484814..2485641	+	275	50843726	-	PPA2289	-	hypothetical protein
2231	 58.33	0	2485647..2485838	-	63	50843727	-	PPA2290	-	hypothetical protein
2232	 60.21	0	2485835..2486701	-	288	50843728	-	PPA2291	-	hypothetical protein
2233	 61.27	0	2486987..2488393	+	468	50843729	fumC	PPA2292	-	fumarate hydratase
2234	 56.47	-1	2488614..2489525	-	303	50843730	-	PPA2293	-	binding-protein-dependent transport system
2235	 55.78	-1	2489527..2490435	-	302	50843731	-	PPA2294	-	binding-protein-dependent transport system
2236	 59.18	0	2490658..2491992	-	444	50843732	-	PPA2295	-	solute-binding lipoprotein
2237	 61.81	0	2492189..2493196	+	335	50843733	-	PPA2296	-	transcription regulator CelR
2238	 62.19	0	2493205..2493897	-	230	50843734	-	PPA2297	-	hypothetical protein
2239	 58.39	0	2494023..2494880	+	285	50843735	-	PPA2298	-	putative mechanosensitive ion channel
2240	 61.54	0	2495050..2496258	-	402	50843736	-	PPA2299	-	glycerate kinase
2241	 61.57	0	2496309..2496563	+	84	50843737	-	PPA2300	-	hypothetical protein
2242	 60.17	0	2496645..2498168	+	507	50843738	-	PPA2301	-	putative RNA nucleotidyltransferase
2243	 59.24	0	2498211..2500352	+	713	50843739	-	PPA2302	-	hypothetical protein
2244	 61.15	0	2500420..2502231	+	603	50843740	-	PPA2303	-	serine-threonine protein kinase
2245	 60.14	0	2502581..2504128	-	515	50843741	-	PPA2304	-	glycerol kinase 2
2246	 60.96	0	2504189..2504941	-	250	50843742	-	PPA2305	-	glycerol uptake facilitator protein
60.05	MEAN

3.20	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.