IslandPathversion 1.0

IslandPath Analysis: Propionibacterium acnes KPA171202



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.05 STD DEV: 3.20
Propionibacterium acnes KPA171202, complete genome - 1..2560265
2297 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2108	 64.41	+1	2347742..2348938	+	398	50843604	-	PPA2167	-	allantoate amidohydrolase
2109	 63.16	0	2348935..2350275	+	446	50843605	-	PPA2168	-	N-formimino-L-glutamate deiminase
2110	 63.22	0	2350272..2351462	+	396	50843606	-	PPA2169	-	imidazolonepropionase
2111	 65.30	+1	2351598..2353133	+	511	50843607	hutH	PPA2170	-	histidine ammonia-lyase
2112	 62.24	0	2353310..2353648	+	112	50843608	-	PPA2171	-	hypothetical protein
2113	 60.27	0	2354102..2354836	-	244	50843609	-	PPA2172	-	NAD-dependent deacetylase
2114	 63.19	0	2354839..2355558	-	239	50843610	-	PPA2173	-	hypothetical protein
2115	 61.54	0	2355632..2356879	-	415	50843611	-	PPA2174	-	proline iminopeptidase
2116	 63.08	0	2357193..2358224	+	343	50843612	-	PPA2175	-	rare lipoprotein A (RlpA) family protein
2117	 62.13	0	2358316..2359131	-	271	50843613	-	PPA2176	-	hypothetical protein
2118	 57.37	0	2359454..2359765	+	103	50843614	-	PPA2177	-	hypothetical protein
2119	 60.99	0	2359743..2360306	+	187	50843615	-	PPA2178	-	hypothetical protein
2120	 61.45	0	2360337..2361851	-	504	50843616	-	PPA2179	-	potassium/proton antiporter
2121	 55.04	-1	2361995..2362639	-	214	50843617	-	PPA2180	-	hypothetical protein
2122	 58.41	0	2362884..2364251	-	455	50843618	-	PPA2181	-	RfbX family protein involved in the export of O-antigen and teichoic acid
2123	 64.67	+1	2364248..2364697	-	149	50843619	-	PPA2182	-	putative cytidine and deoxycytidylate deaminase
2124	 57.92	0	2364734..2365465	-	243	50843620	-	PPA2183	-	hypothetical protein
2125	 63.71	+1	2365576..2366217	+	213	50843621	upp	PPA2184	-	uracil phosphoribosyltransferase
2126	 63.98	+1	2366214..2366957	+	247	50843622	-	PPA2185	-	hypothetical protein
2127	 61.49	0	2366994..2367515	-	173	50843623	-	PPA2186	-	hypothetical protein
2128	 59.05	0	2367841..2369796	+	651	50843624	-	PPA2187	-	K+ potassium transporter
2129	 62.39	0	2369851..2370552	-	233	50843625	-	PPA2188	-	glutamine amidotransferase / GMP synthase
2130	 55.66	-1	2370538..2370864	+	108	50843626	-	PPA2189	-	hypothetical protein
2131	 62.08	0	2371561..2373414	+	617	50843627	-	PPA2190	-	membrane-associated protein
2132	 63.40	+1	2373463..2374473	-	336	50843628	-	PPA2191	-	LacI family transcriptional regulator
2133	 65.37	+1	2374475..2375710	-	411	50843629	-	PPA2192	-	galactokinase
2134	 58.31	0	2375688..2377637	+	649	50843630	-	PPA2193	-	sodium:solute symporter
2135	 60.81	0	2377648..2377920	+	90	50843631	-	PPA2194	-	hypothetical protein
2136	 59.26	0	2378024..2378509	-	161	50843632	-	PPA2195	-	hypothetical protein
2137	 54.75	-1	2378865..2379779	-	304	50843633	-	PPA2198	-	hypothetical protein
2138	 55.12	-1	2379767..2380372	-	201	50843634	-	PPA2199	-	hypothetical protein
2139	 62.38	0	2380556..2381557	+	333	50843635	-	PPA2200	-	Zn-binding dehydrogenase/oxidoreductase
2140	 61.82	0	2381756..2383180	+	474	50843636	-	PPA2201	-	argininosuccinate synthase
2141	 62.78	0	2383635..2384843	+	402	50843637	-	PPA2202	-	membrane protein, putative permease
2142	 59.77	0	2384892..2387051	-	719	50843638	-	PPA2203	-	putative Na+/H+ antiporter
2143	 64.16	+1	2387400..2387957	+	185	50843639	-	PPA2204	-	hypothetical protein
2144	 61.76	0	2388012..2388785	+	257	50843640	-	PPA2205	-	HAD superfamily hydrolase
2145	 55.18	-1	2389175..2389531	+	118	50843641	-	PPA2206	-	ABC transporter, ATP-binding protein
2146	 58.11	0	2389952..2390839	+	295	50843642	-	PPA2207	-	putative ABC transporter-associated permease
2147	 63.44	+1	2390897..2391763	+	288	50843643	-	PPA2208	-	putative transcriptional regulator
2148	 63.97	+1	2391776..2392516	+	246	50843644	-	PPA2209	-	hypothetical protein
2149	 61.57	0	2392803..2394194	+	463	50843645	-	PPA2210	-	putative adhesion or S-layer protein
2150	 52.62	-2	2394342..2395829	-	495	50843646	-	PPA2211	-	purine cytosine permease-like protein
2151	 56.00	-1	2396185..2397534	-	449	50843647	-	PPA2212	-	putative electron transfer flavoprotein-quinone oxidoreductase (FixC protein)
2152	 56.88	0	2397552..2398430	-	292	50843648	-	PPA2213	-	putative electron transfer flavoprotein, carnitine metabolism (FixB protein)
2153	 56.30	-1	2398463..2399224	-	253	50843649	-	PPA2214	-	putative electron transfer flavoprotein (FixA protein)
2154	 55.10	-1	2399333..2400499	-	388	50843650	-	PPA2215	-	putative L-carnitine dehydratase
2155	 55.44	-1	2400537..2401685	-	382	50843651	-	PPA2216	-	acyl-CoA dehydrogenase
2156	 58.30	0	2401911..2402675	-	254	50843652	-	PPA2217	-	IclR family transcriptional regulator
2157	 61.31	0	2402789..2404114	-	441	50843653	-	PPA2218	-	hypothetical protein
2158	 57.80	0	2404111..2405385	-	424	50843654	-	PPA2219	-	seryl-tRNA synthetase
2159	 59.34	0	2405472..2406290	-	272	50843655	-	PPA2220	-	hypothetical protein
2160	 60.11	0	2407005..2407736	-	243	50843656	aat	PPA2221	-	leucyl/phenylalanyl-tRNA--protein transferase
2161	 59.00	0	2408177..2408437	+	86	50843657	-	PPA2222	-	hypothetical protein
2162	 66.13	+1	2408580..2408954	+	124	50843658	-	PPA2223	-	siderophore-interacting protein (fragment)
2163	 58.60	0	2409007..2409861	-	284	50843659	uppP	PPA2224	-	undecaprenyl pyrophosphate phosphatase
2164	 57.23	0	2410073..2410591	-	172	50843660	-	PPA2225	-	ferritin
2165	 60.25	0	2410922..2411560	-	212	50843661	-	PPA2226	-	hypothetical protein
2166	 61.11	0	2411883..2412332	-	149	50843662	-	PPA2227	-	50S ribosomal protein L9
2167	 60.00	0	2412346..2412585	-	79	50843663	rpsR	PPA2228	-	30S ribosomal protein S18
2168	 61.44	0	2412712..2413266	-	184	50843664	-	PPA2229	-	single-strand DNA-binding protein
2169	 54.98	-1	2413394..2413684	-	96	50843665	rpsF	PPA2230	-	30S ribosomal protein S6
2170	 61.71	0	2414206..2414568	-	120	50843666	-	PPA2231	-	hypothetical protein
2171	 61.04	0	2414767..2415228	-	153	50843667	-	PPA2232	-	PTS system, fructose/mannitol specific IIA subunit
2172	 59.49	0	2415252..2416811	-	519	50843668	-	PPA2233	-	PTS system, fructose-specific IIBC component
2173	 59.48	0	2417121..2419055	-	644	50843669	-	PPA2234	-	putative long-chain-fatty-acid--CoA ligase/synthetase
2174	 62.57	0	2419172..2419927	-	251	50843670	-	PPA2235	-	endonuclease IV
2175	 61.60	0	2420039..2420848	+	269	50843671	-	PPA2236	-	short chain dehydrogenase
2176	 61.97	0	2420850..2421701	+	283	50843672	-	PPA2237	-	putative 1-acyl-sn-glycerol-3-phosphate acyltransferase
2177	 60.25	0	2421701..2422183	+	160	50843673	-	PPA2238	-	putative transcriptional regulator
2178	 58.46	0	2422254..2423447	-	397	50843674	-	PPA2239	-	hypothetical protein
2179	 61.53	0	2423727..2425985	-	752	50843675	-	PPA2240	-	cation-transporting ATPase
2180	 61.32	0	2426174..2426566	-	130	50843676	-	PPA2242	-	putative metal-associated protein (copper chaperone)
2181	 59.40	0	2426590..2426988	-	132	50843677	-	PPA2243	-	hypothetical protein
2182	 59.84	0	2427460..2428806	+	448	50843678	-	PPA2244	-	replicative DNA helicase
2183	 60.98	0	2428857..2429858	+	333	50843679	-	PPA2245	-	zinc-binding dehydrogenase
2184	 65.09	+1	2430005..2430322	+	105	50843680	-	PPA2246	-	hypothetical protein
2185	 63.54	+1	2430319..2430894	+	191	50843681	-	PPA2247	-	3-methyladenine DNA glycosylase
2186	 59.87	0	2431221..2432471	-	416	50843682	glpC	PPA2248	-	sn-glycerol-3-phosphate dehydrogenase subunit C
2187	 63.76	+1	2432474..2433817	-	447	50843683	-	PPA2249	-	anaerobic glycerol-3-phosphate dehydrogenase subunit B
2188	 61.96	0	2433814..2435448	-	544	50843684	-	PPA2250	-	anaerobic glycerol-3-phosphate dehydrogenase subunit A
2189	 60.14	0	2435865..2436830	-	321	50843685	-	PPA2251	-	D-isomer specific 2-hydroxyacid dehydrogenase, putative D-3-phosphoglycerate dehydrogenase
2190	 60.38	0	2436888..2437412	+	174	50843686	-	PPA2252	-	MarR family transcriptional regulator
2191	 62.27	0	2437409..2439136	+	575	50843687	-	PPA2253	-	putative chloride channel
2192	 60.98	0	2439139..2440545	-	468	50843688	-	PPA2254	-	amino acid permease, putative GABA permease
2193	 59.74	0	2440661..2441194	-	177	50843689	-	PPA2256	-	MarR family transcriptional regulator
2194	 60.34	0	2441486..2442670	+	394	50843690	-	PPA2257	-	putative DNA repair exonuclease or phosphoesterase
2195	 60.15	0	2442667..2445273	+	868	50843691	-	PPA2258	-	putative ATPase involved in DNA repair
2196	 62.14	0	2445333..2446679	-	448	50843692	-	PPA2259	-	hypothetical protein
2197	 59.26	0	2446679..2447326	-	215	50843693	-	PPA2260	-	TetR family transcriptional regulator
2198	 60.60	0	2447463..2448335	+	290	50843694	-	PPA2261	-	4-amino-4-deoxychorismate lyase
2199	 60.33	0	2448335..2448823	+	162	50843695	-	PPA2262	-	putative transcriptional regulator
2200	 59.15	0	2448836..2449234	-	132	50843696	-	PPA2263	-	hypothetical protein
2201	 60.34	0	2449264..2449800	-	178	50843697	-	PPA2264	-	hypothetical protein
2202	 56.20	-1	2449797..2450417	-	206	50843698	-	PPA2265	-	hypothetical protein
2203	 62.17	0	2450920..2452989	+	689	50843699	nadE	PPA2266	-	NAD synthetase
2204	 62.44	0	2453168..2455414	+	748	50843700	-	PPA2267	-	6-phosphofructokinase, type C
2205	 57.05	0	2455481..2456593	-	370	50843701	-	PPA2268	-	alanine dehydrogenase
2206	 54.60	-1	2456880..2458379	+	499	50843702	-	PPA2269	-	D-serine/D-alanine/glycine transporter
2207	 63.73	+1	2458479..2458682	+	67	50843703	-	PPA2374	-	hypothetical protein
60.05	MEAN

3.20	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.