IslandPathversion 1.0

IslandPath Analysis: Propionibacterium acnes KPA171202



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.05 STD DEV: 3.20
Propionibacterium acnes KPA171202, complete genome - 1..2560265
2297 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2068	 51.28	-2	2301738..2301971	+	77	50843564	-	PPA2366	-	hypothetical protein
2069	 58.46	0	2302311..2303528	+	405	50843565	-	PPA2127	-	putative adhesion or S-layer protein
2070	 60.68	0	2303771..2305441	-	556	50843566	-	PPA2128	-	arginyl-tRNA synthetase
2071	 60.46	0	2305576..2306397	+	273	50843567	-	PPA2129	-	2,5-diketo-D-gluconic acid reductase A
2072	 61.28	0	2306464..2307150	-	228	50843568	-	PPA2130	-	OmpA family membrane associated protein
2073	 60.84	0	2307646..2309328	-	560	50843569	-	PPA2131	-	glucose-6-phosphate isomerase
2074	 62.97	0	2309421..2310395	+	324	50843570	-	PPA2132	-	hypothetical protein
2075	 62.91	0	2310420..2311085	-	221	50843571	-	PPA2133	-	putative aldolase
2076	 58.76	0	2311254..2311784	+	176	50843572	-	PPA2134	-	starvation-inducible DNA-binding protein or fine tangled pili major subunit
2077	 63.57	+1	2311852..2314530	+	892	50843573	-	PPA2135	-	DeaD/DeaH box helicase
2078	 63.76	+1	2314545..2315060	-	171	50843574	-	PPA2136	-	anaerobic ribonucleoside-triphosphate reductase activating protein
2079	 61.33	0	2315057..2317399	-	780	50843575	-	PPA2137	-	anaerobic ribonucleoside triphosphate reductase
2080	 63.85	+1	2317855..2318316	+	153	50843576	-	PPA2138	-	phosphatidylethanolamine-binding protein
2081	 61.03	0	2318549..2319613	+	354	50843577	-	PPA2139	-	putative serine esterase cutinase
2082	 62.23	0	2319619..2320317	-	232	50843578	-	PPA2140	-	hypothetical protein
2083	 61.34	0	2320819..2321400	+	193	50843579	-	PPA2141	-	hypothetical protein
2084	 59.36	0	2321679..2322800	+	373	50843580	-	PPA2142	-	putative lysophospholipase
2085	 59.10	0	2322990..2324483	+	497	50843581	-	PPA2143	-	hypothetical protein
2086	 62.14	0	2324480..2325340	+	286	50843582	-	PPA2144	-	hypothetical protein
2087	 60.82	0	2325337..2326260	+	307	50843583	-	PPA2145	-	mebrane protein, permease
2088	 58.80	0	2326588..2327973	+	461	50843584	-	PPA2146	-	hypothetical protein
2089	 59.78	0	2328008..2329939	-	643	50843585	-	PPA2147	-	membrane protein, MviN-like protein
2090	 60.47	0	2329842..2331116	-	424	50843586	-	PPA2148	-	aspartate kinase
2091	 59.08	0	2331304..2333847	+	847	50843587	-	PPA2149	-	penicillin-binding protein (transglycosylase/transpeptidase)
2092	 60.06	0	2333735..2334763	+	342	50843588	-	PPA2150	-	calcineurin-like phosphoesterase
2093	 59.49	0	2335002..2335670	+	222	50843589	-	PPA2151	-	putative intracellular protease / general stress protein 18
2094	 59.47	0	2335970..2337637	+	555	50843590	-	PPA2152	-	putative peptide transport system secreted peptide-binding protein
2095	 59.63	0	2337710..2338633	+	307	50843591	-	PPA2153	-	putative peptide ABC transporter, permease component
2096	 61.32	0	2338626..2339597	+	323	50843592	-	PPA2154	-	putative peptide ABC transporter, permease component
2097	 61.46	0	2339607..2340644	+	345	50843593	-	PPA2155	-	putative peptide ABC transporter, ATP-binding protein
2098	 61.21	0	2340634..2341695	+	353	50843594	-	PPA2156	-	putative peptide ABC transporter, ATP-binding protein
2099	 56.91	0	2341923..2342168	-	81	50843595	rpmE2	PPA2157	-	50S ribosomal protein L31 type B
2100	 54.85	-1	2342265..2342501	+	78	50843596	-	PPA2158	-	50S ribosomal protein L28
2101	 53.80	-1	2342501..2342671	+	56	50843597	rpmG	PPA2160	-	50S ribosomal protein L33
2102	 60.46	0	2342671..2342976	+	101	50843598	rpsN	PPA2161	-	30S ribosomal protein S14
2103	 60.23	0	2342981..2343151	+	56	50843599	rpmF	PPA2162	-	50S ribosomal protein L32
2104	 60.93	0	2343229..2343594	+	121	50843600	-	PPA2163	-	FK506-binding protein/peptidyl-prolyl cis-trans isomerase
2105	 63.12	0	2343607..2345577	-	656	50843601	-	PPA2164	-	putative beta-N-acetylglucosaminidase precursor
2106	 58.21	0	2345736..2346149	+	137	50843602	-	PPA2165	-	urocanate hydratase fragment
2107	 61.08	0	2346204..2347742	+	512	50843603	-	PPA2166	-	urocanate hydratase
2108	 64.41	+1	2347742..2348938	+	398	50843604	-	PPA2167	-	allantoate amidohydrolase
2109	 63.16	0	2348935..2350275	+	446	50843605	-	PPA2168	-	N-formimino-L-glutamate deiminase
2110	 63.22	0	2350272..2351462	+	396	50843606	-	PPA2169	-	imidazolonepropionase
2111	 65.30	+1	2351598..2353133	+	511	50843607	hutH	PPA2170	-	histidine ammonia-lyase
2112	 62.24	0	2353310..2353648	+	112	50843608	-	PPA2171	-	hypothetical protein
2113	 60.27	0	2354102..2354836	-	244	50843609	-	PPA2172	-	NAD-dependent deacetylase
2114	 63.19	0	2354839..2355558	-	239	50843610	-	PPA2173	-	hypothetical protein
2115	 61.54	0	2355632..2356879	-	415	50843611	-	PPA2174	-	proline iminopeptidase
2116	 63.08	0	2357193..2358224	+	343	50843612	-	PPA2175	-	rare lipoprotein A (RlpA) family protein
2117	 62.13	0	2358316..2359131	-	271	50843613	-	PPA2176	-	hypothetical protein
2118	 57.37	0	2359454..2359765	+	103	50843614	-	PPA2177	-	hypothetical protein
2119	 60.99	0	2359743..2360306	+	187	50843615	-	PPA2178	-	hypothetical protein
2120	 61.45	0	2360337..2361851	-	504	50843616	-	PPA2179	-	potassium/proton antiporter
2121	 55.04	-1	2361995..2362639	-	214	50843617	-	PPA2180	-	hypothetical protein
2122	 58.41	0	2362884..2364251	-	455	50843618	-	PPA2181	-	RfbX family protein involved in the export of O-antigen and teichoic acid
2123	 64.67	+1	2364248..2364697	-	149	50843619	-	PPA2182	-	putative cytidine and deoxycytidylate deaminase
2124	 57.92	0	2364734..2365465	-	243	50843620	-	PPA2183	-	hypothetical protein
2125	 63.71	+1	2365576..2366217	+	213	50843621	upp	PPA2184	-	uracil phosphoribosyltransferase
2126	 63.98	+1	2366214..2366957	+	247	50843622	-	PPA2185	-	hypothetical protein
2127	 61.49	0	2366994..2367515	-	173	50843623	-	PPA2186	-	hypothetical protein
2128	 59.05	0	2367841..2369796	+	651	50843624	-	PPA2187	-	K+ potassium transporter
2129	 62.39	0	2369851..2370552	-	233	50843625	-	PPA2188	-	glutamine amidotransferase / GMP synthase
2130	 55.66	-1	2370538..2370864	+	108	50843626	-	PPA2189	-	hypothetical protein
2131	 62.08	0	2371561..2373414	+	617	50843627	-	PPA2190	-	membrane-associated protein
2132	 63.40	+1	2373463..2374473	-	336	50843628	-	PPA2191	-	LacI family transcriptional regulator
2133	 65.37	+1	2374475..2375710	-	411	50843629	-	PPA2192	-	galactokinase
2134	 58.31	0	2375688..2377637	+	649	50843630	-	PPA2193	-	sodium:solute symporter
2135	 60.81	0	2377648..2377920	+	90	50843631	-	PPA2194	-	hypothetical protein
2136	 59.26	0	2378024..2378509	-	161	50843632	-	PPA2195	-	hypothetical protein
2137	 54.75	-1	2378865..2379779	-	304	50843633	-	PPA2198	-	hypothetical protein
2138	 55.12	-1	2379767..2380372	-	201	50843634	-	PPA2199	-	hypothetical protein
2139	 62.38	0	2380556..2381557	+	333	50843635	-	PPA2200	-	Zn-binding dehydrogenase/oxidoreductase
2140	 61.82	0	2381756..2383180	+	474	50843636	-	PPA2201	-	argininosuccinate synthase
2141	 62.78	0	2383635..2384843	+	402	50843637	-	PPA2202	-	membrane protein, putative permease
2142	 59.77	0	2384892..2387051	-	719	50843638	-	PPA2203	-	putative Na+/H+ antiporter
2143	 64.16	+1	2387400..2387957	+	185	50843639	-	PPA2204	-	hypothetical protein
2144	 61.76	0	2388012..2388785	+	257	50843640	-	PPA2205	-	HAD superfamily hydrolase
2145	 55.18	-1	2389175..2389531	+	118	50843641	-	PPA2206	-	ABC transporter, ATP-binding protein
2146	 58.11	0	2389952..2390839	+	295	50843642	-	PPA2207	-	putative ABC transporter-associated permease
2147	 63.44	+1	2390897..2391763	+	288	50843643	-	PPA2208	-	putative transcriptional regulator
2148	 63.97	+1	2391776..2392516	+	246	50843644	-	PPA2209	-	hypothetical protein
2149	 61.57	0	2392803..2394194	+	463	50843645	-	PPA2210	-	putative adhesion or S-layer protein
2150	 52.62	-2	2394342..2395829	-	495	50843646	-	PPA2211	-	purine cytosine permease-like protein
2151	 56.00	-1	2396185..2397534	-	449	50843647	-	PPA2212	-	putative electron transfer flavoprotein-quinone oxidoreductase (FixC protein)
2152	 56.88	0	2397552..2398430	-	292	50843648	-	PPA2213	-	putative electron transfer flavoprotein, carnitine metabolism (FixB protein)
2153	 56.30	-1	2398463..2399224	-	253	50843649	-	PPA2214	-	putative electron transfer flavoprotein (FixA protein)
2154	 55.10	-1	2399333..2400499	-	388	50843650	-	PPA2215	-	putative L-carnitine dehydratase
2155	 55.44	-1	2400537..2401685	-	382	50843651	-	PPA2216	-	acyl-CoA dehydrogenase
2156	 58.30	0	2401911..2402675	-	254	50843652	-	PPA2217	-	IclR family transcriptional regulator
2157	 61.31	0	2402789..2404114	-	441	50843653	-	PPA2218	-	hypothetical protein
2158	 57.80	0	2404111..2405385	-	424	50843654	-	PPA2219	-	seryl-tRNA synthetase
2159	 59.34	0	2405472..2406290	-	272	50843655	-	PPA2220	-	hypothetical protein
2160	 60.11	0	2407005..2407736	-	243	50843656	aat	PPA2221	-	leucyl/phenylalanyl-tRNA--protein transferase
2161	 59.00	0	2408177..2408437	+	86	50843657	-	PPA2222	-	hypothetical protein
2162	 66.13	+1	2408580..2408954	+	124	50843658	-	PPA2223	-	siderophore-interacting protein (fragment)
2163	 58.60	0	2409007..2409861	-	284	50843659	uppP	PPA2224	-	undecaprenyl pyrophosphate phosphatase
2164	 57.23	0	2410073..2410591	-	172	50843660	-	PPA2225	-	ferritin
2165	 60.25	0	2410922..2411560	-	212	50843661	-	PPA2226	-	hypothetical protein
2166	 61.11	0	2411883..2412332	-	149	50843662	-	PPA2227	-	50S ribosomal protein L9
2167	 60.00	0	2412346..2412585	-	79	50843663	rpsR	PPA2228	-	30S ribosomal protein S18
60.05	MEAN

3.20	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.