IslandPathversion 1.0

IslandPath Analysis: Propionibacterium acnes KPA171202



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.05 STD DEV: 3.20
Propionibacterium acnes KPA171202, complete genome - 1..2560265
2297 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2006	 58.96	0	2236873..2238183	+	436	50843502	-	PPA2058	-	putative secreted sugar-binding protein
2007	 59.14	0	2238189..2239091	+	300	50843503	-	PPA2059	-	binding-protein-dependent transport system permease
2008	 57.60	0	2239088..2239903	+	271	50843504	-	PPA2060	-	binding-protein-dependent transport system permease
2009	 61.01	0	2239956..2241476	-	506	50843505	-	PPA2061	-	hypothetical protein
2010	 60.13	0	2241476..2242669	-	397	50843506	-	PPA2062	-	ROK family transcriptional regulator
2011	 56.76	-1	2242860..2244656	+	598	50843507	-	PPA2063	-	putative peptide-binding transport protein
2012	 57.81	0	2244772..2245731	+	319	50843508	-	PPA2064	-	dipeptide transport system permease protein DppB
2013	 60.93	0	2245728..2246669	+	313	50843509	-	PPA2065	-	dipeptide transport system permease protein DppC
2014	 58.54	0	2246671..2248725	+	684	50843510	-	PPA2066	-	ATP-binding protein of dipeptide ABC transporter
2015	 63.79	+1	2248722..2249660	+	312	50843511	-	PPA2359	-	putative transcriptional repressor protein
2016	 60.34	0	2249642..2250952	+	436	50843512	-	PPA2070	-	alpha-L-fucosidase precursor
2017	 66.50	+2	2251258..2251869	+	203	50843513	-	PPA2071	-	hypothetical protein
2018	 59.22	0	2251942..2252196	-	84	50843514	-	PPA2072	-	hypothetical protein
2019	 58.97	0	2252307..2252696	-	129	50843515	-	PPA2073	-	hypothetical protein
2020	 57.02	0	2252693..2252920	-	75	50843516	-	PPA2075	-	hypothetical protein
2021	 64.29	+1	2253365..2254330	-	321	50843517	-	PPA2076	-	inosine-uridine preferring nucleoside hydrolase
2022	 59.91	0	2254400..2255035	-	211	50843518	-	PPA2077	-	TetR family transcriptional regulator
2023	 61.86	0	2255035..2255700	-	221	50843519	-	PPA2078	-	ABC transporter, ATP-binding protein
2024	 63.04	0	2255891..2256745	-	284	50843520	-	PPA2081	-	ABC transporter, putative permease
2025	 63.93	+1	2256742..2258607	-	621	50843521	-	PPA2082	-	ABC transporter ATP-binding protein
2026	 60.27	0	2258604..2259197	-	197	50843522	-	PPA2083	-	putative permease
2027	 62.04	0	2259194..2260726	-	510	50843523	-	PPA2084	-	ABC transporter ATP-binding protein (putative cobalt transport system)
2028	 60.44	0	2260723..2261541	-	272	50843524	-	PPA2085	-	ABC transporter associated permease (putative cobalt transport system)
2029	 62.09	0	2261655..2262113	+	152	50843525	-	PPA2086	-	hypothetical protein
2030	 63.81	+1	2262351..2262665	+	104	50843526	-	PPA2087	-	hypothetical protein
2031	 64.33	+1	2262771..2263454	+	227	50843527	-	PPA2088	-	hypothetical protein
2032	 59.86	0	2263539..2264243	-	234	50843528	-	PPA2089	-	hypothetical protein
2033	 60.09	0	2264240..2265607	-	455	50843529	-	PPA2090	-	ABC transporter permease
2034	 59.46	0	2265607..2266341	-	244	50843530	-	PPA2091	-	ABC transporter ATP-binding protein
2035	 64.61	+1	2266523..2267932	-	469	50843531	-	PPA2092	-	dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex
2036	 63.08	0	2267950..2268954	-	334	50843532	-	PPA2093	-	pyruvate dehydrogenase E1 component, beta subunit
2037	 63.70	+1	2268954..2270099	-	381	50843533	-	PPA2094	-	pyruvate dehydrogenase E1 component, alpha subunit
2038	 64.26	+1	2270288..2271658	+	456	50843534	-	PPA2095	-	protoporphyrinogen oxidase
2039	 62.37	0	2271658..2272938	+	426	50843535	-	PPA2096	-	molybdenum cofactor biosynthesis enzyme/coproporphyrinogen III oxidase
2040	 61.22	0	2273208..2275319	+	703	50843536	-	PPA2097	-	5'-nucleotidase/2',3'-cyclic phosphodiesterase or related esterase
2041	 64.23	+1	2275533..2275778	-	81	50843537	-	PPA2098	-	ABC transporter ATP-binding protein
2042	 63.41	+1	2276025..2276300	-	91	50843538	-	PPA2099	-	ABC transporter transmembrane region
2043	 60.94	0	2276577..2276873	-	98	50843539	-	PPA2101	-	hypothetical protein
2044	 66.24	+1	2276901..2277365	-	154	50843540	-	PPA2102	-	hypothetical protein
2045	 66.17	+1	2277586..2277984	+	132	50843541	-	PPA2103	-	hypothetical protein
2046	 66.67	+2	2278033..2278341	+	102	50843542	-	PPA2104	-	putative transposase
2047	 63.73	+1	2278518..2279537	-	339	50843543	-	PPA2105	-	triacylglycerol lipase precursor
2048	 66.53	+2	2280127..2281629	+	500	50843544	-	PPA2106	-	endoglycoceramidase
2049	 62.10	0	2281998..2282435	-	145	50843545	-	PPA2107	-	hypothetical protein
2050	 64.09	+1	2282705..2283520	+	271	50843546	-	PPA2108	-	cAMP factor
2051	 61.52	0	2283696..2284472	-	258	50843547	-	PPA2109	-	hypothetical protein
2052	 63.52	+1	2284487..2284963	+	158	50843548	-	PPA2110	-	low molecular weight protein-tyrosine-phosphatase
2053	 68.40	+2	2285027..2286121	+	364	50843549	-	PPA2111	-	hypothetical protein
2054	 61.95	0	2286118..2286816	+	232	50843550	-	PPA2112	-	putative two-component response regulator
2055	 61.98	0	2286813..2288243	+	476	50843551	-	PPA2113	-	putative two-component system sensor kinase
2056	 63.04	0	2288345..2289310	+	321	50843552	-	PPA2114	-	putative asparaginase
2057	 60.50	0	2289317..2289916	-	199	50843553	-	PPA2115	-	isopentenyl-diphosphate delta-isomerase
2058	 62.73	0	2290050..2291243	+	397	50843554	-	PPA2116	-	trypsin-like serine protease
2059	 61.42	0	2291412..2291735	+	107	50843555	-	PPA2117	-	hypothetical protein
2060	 64.03	+1	2291788..2292888	+	366	50843556	-	PPA2118	-	NADH:flavin oxidoreductase
2061	 62.20	0	2292943..2293188	+	81	50843557	-	PPA2119	-	hypothetical protein
2062	 58.23	0	2293195..2294427	+	410	50843558	-	PPA2120	-	dicarboxylate transport protein / putative alpha-ketoglutarate permease
2063	 62.50	0	2294877..2297447	+	856	50843559	-	PPA2121	-	ribonucleotide-diphosphate reductase subunit alpha
2064	 55.22	-1	2297482..2298468	+	328	50843560	nrdF	PPA2122	-	ribonucleotide-diphosphate reductase subunit beta
2065	 59.62	0	2298866..2299078	+	70	50843561	-	PPA2123	-	hypothetical protein
2066	 61.13	0	2299238..2300320	+	360	50843562	-	PPA2125	-	polyphosphate glucokinase/transcriptional regulator
2067	 56.54	-1	2300494..2301105	+	203	50843563	-	PPA2126	-	hypothetical protein
2068	 51.28	-2	2301738..2301971	+	77	50843564	-	PPA2366	-	hypothetical protein
2069	 58.46	0	2302311..2303528	+	405	50843565	-	PPA2127	-	putative adhesion or S-layer protein
2070	 60.68	0	2303771..2305441	-	556	50843566	-	PPA2128	-	arginyl-tRNA synthetase
2071	 60.46	0	2305576..2306397	+	273	50843567	-	PPA2129	-	2,5-diketo-D-gluconic acid reductase A
2072	 61.28	0	2306464..2307150	-	228	50843568	-	PPA2130	-	OmpA family membrane associated protein
2073	 60.84	0	2307646..2309328	-	560	50843569	-	PPA2131	-	glucose-6-phosphate isomerase
2074	 62.97	0	2309421..2310395	+	324	50843570	-	PPA2132	-	hypothetical protein
2075	 62.91	0	2310420..2311085	-	221	50843571	-	PPA2133	-	putative aldolase
2076	 58.76	0	2311254..2311784	+	176	50843572	-	PPA2134	-	starvation-inducible DNA-binding protein or fine tangled pili major subunit
2077	 63.57	+1	2311852..2314530	+	892	50843573	-	PPA2135	-	DeaD/DeaH box helicase
2078	 63.76	+1	2314545..2315060	-	171	50843574	-	PPA2136	-	anaerobic ribonucleoside-triphosphate reductase activating protein
2079	 61.33	0	2315057..2317399	-	780	50843575	-	PPA2137	-	anaerobic ribonucleoside triphosphate reductase
2080	 63.85	+1	2317855..2318316	+	153	50843576	-	PPA2138	-	phosphatidylethanolamine-binding protein
2081	 61.03	0	2318549..2319613	+	354	50843577	-	PPA2139	-	putative serine esterase cutinase
2082	 62.23	0	2319619..2320317	-	232	50843578	-	PPA2140	-	hypothetical protein
2083	 61.34	0	2320819..2321400	+	193	50843579	-	PPA2141	-	hypothetical protein
2084	 59.36	0	2321679..2322800	+	373	50843580	-	PPA2142	-	putative lysophospholipase
2085	 59.10	0	2322990..2324483	+	497	50843581	-	PPA2143	-	hypothetical protein
2086	 62.14	0	2324480..2325340	+	286	50843582	-	PPA2144	-	hypothetical protein
2087	 60.82	0	2325337..2326260	+	307	50843583	-	PPA2145	-	mebrane protein, permease
2088	 58.80	0	2326588..2327973	+	461	50843584	-	PPA2146	-	hypothetical protein
2089	 59.78	0	2328008..2329939	-	643	50843585	-	PPA2147	-	membrane protein, MviN-like protein
2090	 60.47	0	2329842..2331116	-	424	50843586	-	PPA2148	-	aspartate kinase
2091	 59.08	0	2331304..2333847	+	847	50843587	-	PPA2149	-	penicillin-binding protein (transglycosylase/transpeptidase)
2092	 60.06	0	2333735..2334763	+	342	50843588	-	PPA2150	-	calcineurin-like phosphoesterase
2093	 59.49	0	2335002..2335670	+	222	50843589	-	PPA2151	-	putative intracellular protease / general stress protein 18
2094	 59.47	0	2335970..2337637	+	555	50843590	-	PPA2152	-	putative peptide transport system secreted peptide-binding protein
2095	 59.63	0	2337710..2338633	+	307	50843591	-	PPA2153	-	putative peptide ABC transporter, permease component
2096	 61.32	0	2338626..2339597	+	323	50843592	-	PPA2154	-	putative peptide ABC transporter, permease component
2097	 61.46	0	2339607..2340644	+	345	50843593	-	PPA2155	-	putative peptide ABC transporter, ATP-binding protein
2098	 61.21	0	2340634..2341695	+	353	50843594	-	PPA2156	-	putative peptide ABC transporter, ATP-binding protein
2099	 56.91	0	2341923..2342168	-	81	50843595	rpmE2	PPA2157	-	50S ribosomal protein L31 type B
2100	 54.85	-1	2342265..2342501	+	78	50843596	-	PPA2158	-	50S ribosomal protein L28
2101	 53.80	-1	2342501..2342671	+	56	50843597	rpmG	PPA2160	-	50S ribosomal protein L33
2102	 60.46	0	2342671..2342976	+	101	50843598	rpsN	PPA2161	-	30S ribosomal protein S14
2103	 60.23	0	2342981..2343151	+	56	50843599	rpmF	PPA2162	-	50S ribosomal protein L32
2104	 60.93	0	2343229..2343594	+	121	50843600	-	PPA2163	-	FK506-binding protein/peptidyl-prolyl cis-trans isomerase
2105	 63.12	0	2343607..2345577	-	656	50843601	-	PPA2164	-	putative beta-N-acetylglucosaminidase precursor
60.05	MEAN

3.20	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.