IslandPathversion 1.0

IslandPath Analysis: Propionibacterium acnes KPA171202



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.05 STD DEV: 3.20
Propionibacterium acnes KPA171202, complete genome - 1..2560265
2297 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1954	 59.59	0	2177147..2177683	+	178	50843450	-	PPA2004	-	hypothetical protein
1955	 64.46	+1	2177840..2178202	-	120	50843451	-	PPA2005	-	biotin carboxyl carrier protein of methylmalonyl-CoA carboxyl-transferase (transcarboxylase, 1.3S subunit)
1956	 61.32	0	2178218..2178460	-	80	50843452	-	PPA2006	-	C-terminal fragment of methylmalonyl-CoA carboxyltransferase
1957	 61.59	0	2178487..2180061	-	524	50843453	-	PPA2007	-	methylmalonyl-CoA carboxyltransferase
1958	 61.04	0	2180077..2181570	-	497	50843454	-	PPA2008	-	oxaloacetate decarboxylase
1959	 63.87	+1	2181891..2183249	-	452	50843455	-	PPA2009	-	putative aerotaxis sensor receptor
1960	 57.19	0	2183676..2184002	+	108	50843456	-	PPA2010	-	hypothetical protein
1961	 59.45	0	2184062..2185087	-	341	50843457	-	PPA2011	-	fructose-bisphosphate aldolase
1962	 59.39	0	2185198..2185788	-	196	50843458	-	PPA2012	-	hypothetical protein
1963	 58.38	0	2185822..2186412	-	196	50843459	-	PPA2013	-	rRNA methylase (SpoU family protein)
1964	 57.61	0	2186460..2187254	+	264	50843460	-	PPA2014	-	DedA family membrane protein
1965	 59.52	0	2187292..2187837	-	181	50843461	-	PPA2015	-	hypothetical protein
1966	 63.43	+1	2187940..2188743	-	267	50843462	-	PPA2016	-	hypothetical protein
1967	 58.24	0	2188740..2189783	-	347	50843463	-	PPA2017	-	periplasmic binding protein of proline/glycine betaine transport system
1968	 62.70	0	2189897..2190274	+	125	50843464	-	PPA2018	-	putative preprotein translocase subunit
1969	 55.49	-1	2190460..2191971	-	503	50843465	-	PPA2020	-	transporter permease
1970	 62.00	0	2192122..2194695	-	857	50843466	-	PPA2021	-	ATP-dependent protease (Clp chaperone)
1971	 63.87	+1	2194985..2196343	+	452	50843467	-	PPA2022	-	branched-chain amino acid transport permease
1972	 59.11	0	2196350..2197024	-	224	50843468	-	PPA2023	-	hypothetical protein
1973	 57.10	0	2197178..2198086	-	302	50843469	-	PPA2024	-	fructose-1,6-bisphosphate aldolase
1974	 61.29	0	2198152..2198820	-	222	50843470	-	PPA2025	-	hypothetical protein
1975	 61.63	0	2198718..2199929	-	403	50843471	-	PPA2026	-	manganese transport protein
1976	 63.62	+1	2200064..2201341	+	425	50843472	-	PPA2027	-	putative two component sensor kinase
1977	 63.41	+1	2201372..2202046	+	224	50843473	-	PPA2028	-	putative two-component response regulator
1978	 63.54	+1	2202191..2202925	+	244	50843474	-	PPA2030	-	ABC transporter ATP-binding protein
1979	 62.21	0	2202922..2205345	+	807	50843475	-	PPA2031	-	ABC transporter associated permease
1980	 63.08	0	2205381..2205854	-	157	50843476	-	PPA2032	-	MutT/NUDIX family protein
1981	 60.71	0	2205917..2207275	+	452	50843477	-	PPA2033	-	aromatic amino acid transport permease AroP
1982	 61.15	0	2207318..2208895	-	525	50843478	-	PPA2034	-	membrane protein (putative permease)
1983	 61.11	0	2209096..2210139	-	347	50843479	-	PPA2035	-	putative zinc-binding dehydrogenase
1984	 60.14	0	2210243..2211100	-	285	50843480	-	PPA2036	-	lipase/acylhydrolase
1985	 60.17	0	2211255..2211716	-	153	50843481	-	PPA2037	-	putative heat shock transcriptional regulator
1986	 62.12	0	2211718..2212860	-	380	50843482	-	PPA2038	-	chaperone protein DnaJ
1987	 61.86	0	2212934..2213599	-	221	50843483	-	PPA2039	-	molecular chaperone GrpE (heat shock protein)
1988	 62.03	0	2213684..2215537	-	617	50843484	dnaK	PPA2040	-	molecular chaperone DnaK
1989	 60.26	0	2215797..2216030	-	77	50843485	-	PPA2041	-	hypothetical protein
1990	 60.21	0	2216027..2217172	-	381	50843486	-	PPA2042	-	putative low-affinity phosphate transport protein
1991	 59.15	0	2217596..2218327	+	243	50843487	-	PPA2043	-	putative two-component system response regulator
1992	 55.71	-1	2218834..2219043	-	69	50843488	-	PPA2044	-	hypothetical protein
1993	 63.56	+1	2219066..2219740	+	224	50843489	-	PPA2045	-	deoxyribose-phosphate aldolase
1994	 60.63	0	2219764..2220492	-	242	50843490	-	PPA2046	-	hypothetical protein
1995	 62.76	0	2220639..2221814	-	391	50843491	-	PPA2047	-	hypothetical protein
1996	 60.86	0	2221987..2224638	-	883	50843492	-	PPA2048	-	pyruvate phosphate dikinase
1997	 61.92	0	2224977..2225861	-	294	50843493	-	PPA2049	-	hypothetical protein
1998	 63.88	+1	2226037..2227041	+	334	50843494	-	PPA2050	-	hypothetical protein
1999	 62.12	0	2227121..2227978	+	285	50843495	-	PPA2051	-	putative phosphoserine phosphatase
2000	 60.86	0	2227981..2228790	+	269	50843496	-	PPA2052	-	hypothetical protein
2001	 60.92	0	2229068..2230582	+	504	50843497	-	PPA2053	-	coenzyme A transferase (putative succinyl-CoA or butyryl-CoA:coenzyme A transferase)
2002	 67.09	+2	2230797..2232197	-	466	50843498	-	PPA2054	-	amidase
2003	 65.17	+1	2232222..2233223	-	333	50843499	-	PPA2055	-	LacI family transcription regulator
2004	 64.20	+1	2233261..2234598	-	445	50843500	-	PPA2056	-	beta-glucanase
2005	 61.31	0	2235065..2236876	+	603	50843501	-	PPA2057	-	alpha-galactosidase
2006	 58.96	0	2236873..2238183	+	436	50843502	-	PPA2058	-	putative secreted sugar-binding protein
2007	 59.14	0	2238189..2239091	+	300	50843503	-	PPA2059	-	binding-protein-dependent transport system permease
2008	 57.60	0	2239088..2239903	+	271	50843504	-	PPA2060	-	binding-protein-dependent transport system permease
2009	 61.01	0	2239956..2241476	-	506	50843505	-	PPA2061	-	hypothetical protein
2010	 60.13	0	2241476..2242669	-	397	50843506	-	PPA2062	-	ROK family transcriptional regulator
2011	 56.76	-1	2242860..2244656	+	598	50843507	-	PPA2063	-	putative peptide-binding transport protein
2012	 57.81	0	2244772..2245731	+	319	50843508	-	PPA2064	-	dipeptide transport system permease protein DppB
2013	 60.93	0	2245728..2246669	+	313	50843509	-	PPA2065	-	dipeptide transport system permease protein DppC
2014	 58.54	0	2246671..2248725	+	684	50843510	-	PPA2066	-	ATP-binding protein of dipeptide ABC transporter
2015	 63.79	+1	2248722..2249660	+	312	50843511	-	PPA2359	-	putative transcriptional repressor protein
2016	 60.34	0	2249642..2250952	+	436	50843512	-	PPA2070	-	alpha-L-fucosidase precursor
2017	 66.50	+2	2251258..2251869	+	203	50843513	-	PPA2071	-	hypothetical protein
2018	 59.22	0	2251942..2252196	-	84	50843514	-	PPA2072	-	hypothetical protein
2019	 58.97	0	2252307..2252696	-	129	50843515	-	PPA2073	-	hypothetical protein
2020	 57.02	0	2252693..2252920	-	75	50843516	-	PPA2075	-	hypothetical protein
2021	 64.29	+1	2253365..2254330	-	321	50843517	-	PPA2076	-	inosine-uridine preferring nucleoside hydrolase
2022	 59.91	0	2254400..2255035	-	211	50843518	-	PPA2077	-	TetR family transcriptional regulator
2023	 61.86	0	2255035..2255700	-	221	50843519	-	PPA2078	-	ABC transporter, ATP-binding protein
2024	 63.04	0	2255891..2256745	-	284	50843520	-	PPA2081	-	ABC transporter, putative permease
2025	 63.93	+1	2256742..2258607	-	621	50843521	-	PPA2082	-	ABC transporter ATP-binding protein
2026	 60.27	0	2258604..2259197	-	197	50843522	-	PPA2083	-	putative permease
2027	 62.04	0	2259194..2260726	-	510	50843523	-	PPA2084	-	ABC transporter ATP-binding protein (putative cobalt transport system)
2028	 60.44	0	2260723..2261541	-	272	50843524	-	PPA2085	-	ABC transporter associated permease (putative cobalt transport system)
2029	 62.09	0	2261655..2262113	+	152	50843525	-	PPA2086	-	hypothetical protein
2030	 63.81	+1	2262351..2262665	+	104	50843526	-	PPA2087	-	hypothetical protein
2031	 64.33	+1	2262771..2263454	+	227	50843527	-	PPA2088	-	hypothetical protein
2032	 59.86	0	2263539..2264243	-	234	50843528	-	PPA2089	-	hypothetical protein
2033	 60.09	0	2264240..2265607	-	455	50843529	-	PPA2090	-	ABC transporter permease
2034	 59.46	0	2265607..2266341	-	244	50843530	-	PPA2091	-	ABC transporter ATP-binding protein
2035	 64.61	+1	2266523..2267932	-	469	50843531	-	PPA2092	-	dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex
2036	 63.08	0	2267950..2268954	-	334	50843532	-	PPA2093	-	pyruvate dehydrogenase E1 component, beta subunit
2037	 63.70	+1	2268954..2270099	-	381	50843533	-	PPA2094	-	pyruvate dehydrogenase E1 component, alpha subunit
2038	 64.26	+1	2270288..2271658	+	456	50843534	-	PPA2095	-	protoporphyrinogen oxidase
2039	 62.37	0	2271658..2272938	+	426	50843535	-	PPA2096	-	molybdenum cofactor biosynthesis enzyme/coproporphyrinogen III oxidase
2040	 61.22	0	2273208..2275319	+	703	50843536	-	PPA2097	-	5'-nucleotidase/2',3'-cyclic phosphodiesterase or related esterase
2041	 64.23	+1	2275533..2275778	-	81	50843537	-	PPA2098	-	ABC transporter ATP-binding protein
2042	 63.41	+1	2276025..2276300	-	91	50843538	-	PPA2099	-	ABC transporter transmembrane region
2043	 60.94	0	2276577..2276873	-	98	50843539	-	PPA2101	-	hypothetical protein
2044	 66.24	+1	2276901..2277365	-	154	50843540	-	PPA2102	-	hypothetical protein
2045	 66.17	+1	2277586..2277984	+	132	50843541	-	PPA2103	-	hypothetical protein
2046	 66.67	+2	2278033..2278341	+	102	50843542	-	PPA2104	-	putative transposase
2047	 63.73	+1	2278518..2279537	-	339	50843543	-	PPA2105	-	triacylglycerol lipase precursor
2048	 66.53	+2	2280127..2281629	+	500	50843544	-	PPA2106	-	endoglycoceramidase
2049	 62.10	0	2281998..2282435	-	145	50843545	-	PPA2107	-	hypothetical protein
2050	 64.09	+1	2282705..2283520	+	271	50843546	-	PPA2108	-	cAMP factor
2051	 61.52	0	2283696..2284472	-	258	50843547	-	PPA2109	-	hypothetical protein
2052	 63.52	+1	2284487..2284963	+	158	50843548	-	PPA2110	-	low molecular weight protein-tyrosine-phosphatase
2053	 68.40	+2	2285027..2286121	+	364	50843549	-	PPA2111	-	hypothetical protein
60.05	MEAN

3.20	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.