IslandPathversion 1.0

IslandPath Analysis: Propionibacterium acnes KPA171202



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.05 STD DEV: 3.20
Propionibacterium acnes KPA171202, complete genome - 1..2560265
2297 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1874	 63.74	+1	2079066..2079986	-	306	50843370	-	PPA1919	-	citrate lyase beta chain
1875	 61.17	0	2080022..2080804	-	260	50843371	-	PPA1920	-	precorrin 6A synthase
1876	 61.95	0	2080835..2081809	-	324	50843372	-	PPA1921	-	heptaprenyl diphosphate synthase component II
1877	 62.71	0	2082002..2083618	-	538	50843373	-	PPA1922	-	NADH dehydrogenase subunit N
1878	 60.71	0	2083615..2085108	-	497	50843374	-	PPA1923	-	NADH dehydrogenase subunit M
1879	 60.04	0	2085126..2087012	-	628	50843375	-	PPA1924	-	NADH dehydrogenase subunit L
1880	 56.33	-1	2087023..2087322	-	99	50843376	-	PPA1925	-	NADH dehydrogenase subunit K
1881	 60.12	0	2087319..2088173	-	284	50843377	-	PPA1926	-	NADH dehydrogenase subunit J
1882	 60.64	0	2088173..2088769	-	198	50843378	-	PPA1928	-	NADH dehydrogenase subunit I
1883	 60.24	0	2088769..2090091	-	440	50843379	-	PPA1929	-	NADH dehydrogenase subunit H
1884	 63.80	+1	2090088..2092526	-	812	50843380	-	PPA1930	-	NADH dehydrogenase subunit G
1885	 61.42	0	2092523..2093857	-	444	50843381	-	PPA1931	-	NADH dehydrogenase I chain F
1886	 60.56	0	2093854..2094639	-	261	50843382	-	PPA1932	-	NADH dehydrogenase subunit E
1887	 59.22	0	2094636..2095937	-	433	50843383	-	PPA1933	-	NADH dehydrogenase subunit D
1888	 62.79	0	2095937..2096761	-	274	50843384	-	PPA1934	-	NADH dehydrogenase subunit C
1889	 62.37	0	2096758..2097315	-	185	50843385	-	PPA1935	-	NADH dehydrogenase subunit B
1890	 56.67	-1	2097409..2097768	-	119	50843386	-	PPA1936	-	NADH dehydrogenase subunit A
1891	 60.73	0	2097889..2099151	-	420	50843387	-	PPA1938	-	putative electron transfer oxidoreductase
1892	 61.93	0	2099382..2099867	+	161	50843388	-	PPA1939	-	hypothetical protein
1893	 60.53	0	2099944..2101230	+	428	50843389	-	PPA1940	-	menaquinone-specific isochorismate synthase
1894	 63.79	+1	2101296..2103032	-	578	50843390	-	PPA1941	-	ABC transporter permease
1895	 59.69	0	2103029..2103673	-	214	50843391	-	PPA1942	-	ABC transporter ATP-binding protein
1896	 61.79	0	2103936..2104694	+	252	161621790	ubiE	PPA1943	-	ubiquinone/menaquinone biosynthesis methyltransferase
1897	 61.02	0	2104691..2106514	+	607	50843393	-	PPA1944	-	hypothetical protein
1898	 62.23	0	2106470..2107348	-	292	50843394	-	PPA1945	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
1899	 61.38	0	2107548..2108834	+	428	50843395	-	PPA1946	-	membrane protein, putative permease
1900	 60.45	0	2108896..2109924	+	342	50843396	-	PPA1947	-	hypothetical protein
1901	 62.48	0	2109924..2110568	+	214	50843397	-	PPA1948	-	hypothetical protein
1902	 59.62	0	2110561..2110986	+	141	50843398	-	PPA1949	-	PTS protein, putative dihydroxyacetone kinase phosphotransfer protein
1903	 62.96	0	2111070..2111528	-	152	50843399	-	PPA1950	-	deoxycytidylate deaminase
1904	 58.76	0	2111614..2112549	-	311	50843400	-	PPA1951	-	Co/Zn/Cd cation transporter
1905	 61.08	0	2112772..2113737	+	321	50843401	-	PPA1952	-	L-lactate dehydrogenase
1906	 60.08	0	2113770..2115272	+	500	50843402	-	PPA1953	-	patatin-like phospholipase
1907	 58.85	0	2115351..2116169	-	272	50843403	-	PPA1954	-	sugar phosphatase/hydrolase
1908	 61.87	0	2116246..2118102	-	618	50843404	-	PPA1955	-	hypothetical protein
1909	 62.43	0	2118266..2119399	-	377	50843405	-	PPA1957	-	ROK family transcriptional regulator
1910	 62.73	0	2119541..2121193	+	550	50843406	-	PPA1958	-	hypothetical protein
1911	 58.55	0	2121190..2122125	+	311	50843407	-	PPA1959	-	binding-protein-dependent transport permease
1912	 57.61	0	2122118..2123044	+	308	50843408	-	PPA1960	-	binding-protein-dependent transport permease
1913	 57.90	0	2123055..2124377	+	440	50843409	-	PPA1961	-	sugar-binding periplasmic protein
1914	 64.10	+1	2125018..2126265	+	415	50843410	-	PPA1962	-	putative cell wall-associated hydrolase
1915	 58.58	0	2127186..2128112	-	308	50843411	-	PPA1964	-	binding-protein-dependent transport permease
1916	 56.08	-1	2128112..2129008	-	298	50843412	-	PPA1965	-	binding-protein-dependent transport permease
1917	 59.02	0	2129137..2130444	-	435	50843413	-	PPA1966	-	extracellular solute-binding protein
1918	 60.08	0	2130592..2131548	-	318	50843414	-	PPA1967	-	putative lysophospholipase
1919	 58.43	0	2131564..2131818	-	84	50843415	-	PPA1968	-	hypothetical protein
1920	 62.08	0	2131903..2132970	-	355	50843416	-	PPA1969	-	phosphoribosylaminoimidazole synthetase
1921	 62.30	0	2132967..2134454	-	495	50843417	-	PPA1970	-	amidophosphoribosyltransferase
1922	 65.06	+1	2134549..2135793	-	414	50843418	-	PPA1971	-	hypothetical protein
1923	 64.36	+1	2135978..2137321	-	447	50843419	-	PPA1972	-	hypothetical protein
1924	 61.33	0	2137463..2138230	-	255	50843420	-	PPA1973	-	stomatin/prohibitin-like protein
1925	 64.54	+1	2138227..2139024	-	265	50843421	-	PPA1974	-	hypothetical protein
1926	 59.68	0	2139021..2141267	-	748	50843422	-	PPA1975	-	nitric-oxide reductase subunit B
1927	 62.21	0	2141513..2143600	+	695	50843423	-	PPA1976	-	para-aminobenzoate synthase
1928	 62.67	0	2143587..2145839	-	750	50843424	-	PPA1977	-	phosphoribosylformylglycinamidine synthase II
1929	 61.94	0	2146030..2147277	+	415	50843425	-	PPA1978	-	major facilitator superfamily permease
1930	 61.03	0	2147287..2149821	-	844	50843426	-	PPA1979	-	aminopeptidase N
1931	 60.50	0	2149968..2150405	-	145	50843427	-	PPA1980	-	hypothetical protein
1932	 62.69	0	2150707..2152113	+	468	50843428	-	PPA1981	-	pyridine nucleotide-disulphide oxidoreductase
1933	 61.99	0	2152186..2153661	-	491	50843429	-	PPA1982	-	acid phosphatase
1934	 57.90	0	2154378..2156441	+	687	50843430	-	PPA1983	-	hypothetical protein
1935	 49.10	-2	2156438..2156995	+	185	50843431	-	PPA1984	-	protein associated to putative adhesion protein
1936	 51.90	-2	2156999..2157235	+	78	50843432	-	PPA1985	-	hypothetical protein
1937	 64.35	+1	2157242..2158321	+	359	50843433	-	PPA1986	-	BadF/BadG/BcrA/BcrD ATPase family protein
1938	 60.89	0	2158399..2159073	-	224	50843434	-	PPA1987	-	phosphoribosylformylglycinamidine synthase subunit I
1939	 61.30	0	2159076..2160341	-	421	50843435	-	PPA1988	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
1940	 60.46	0	2160476..2161039	+	187	50843436	-	PPA1989	-	alkyl hydroperoxide reductase C22 protein
1941	 63.56	+1	2160996..2162702	+	568	50843437	-	PPA1990	-	alkyl hydroperoxide reductase subunit F
1942	 63.17	0	2162709..2163653	+	314	50843438	-	PPA1991	-	oxidative stress transcriptional regulatory protein
1943	 59.48	0	2163687..2165120	-	477	50843439	-	PPA1992	-	adenylosuccinate lyase
1944	 64.17	+1	2165117..2166436	-	439	50843440	-	PPA1993	-	phosphoribosylamine-glycine ligase
1945	 59.83	0	2166495..2167781	-	428	50843441	-	PPA1994	-	adenylosuccinate synthetase
1946	 61.86	0	2167949..2168926	-	325	50843442	-	PPA1995	-	hypothetical protein
1947	 61.90	0	2168978..2169712	+	244	50843443	-	PPA1996	-	GntR family transcriptional regulator
1948	 65.07	+1	2169837..2170526	-	229	50843444	-	PPA1997	-	N-acetylmannosamine-6-phosphate 2-epimerase
1949	 62.87	0	2170559..2171479	-	306	50843445	-	PPA1998	-	dihydrodipicolinate synthase
1950	 65.45	+1	2171527..2172429	-	300	50843446	-	PPA1999	-	hypothetical protein
1951	 58.26	0	2172454..2174058	-	534	50843447	-	PPA2000	-	putative sialic acid transporter
1952	 60.61	0	2174186..2174713	-	175	50843448	-	PPA2002	-	hypothetical protein
1953	 61.30	0	2175111..2176973	+	620	50843449	-	PPA2003	-	GTPase
1954	 59.59	0	2177147..2177683	+	178	50843450	-	PPA2004	-	hypothetical protein
1955	 64.46	+1	2177840..2178202	-	120	50843451	-	PPA2005	-	biotin carboxyl carrier protein of methylmalonyl-CoA carboxyl-transferase (transcarboxylase, 1.3S subunit)
1956	 61.32	0	2178218..2178460	-	80	50843452	-	PPA2006	-	C-terminal fragment of methylmalonyl-CoA carboxyltransferase
1957	 61.59	0	2178487..2180061	-	524	50843453	-	PPA2007	-	methylmalonyl-CoA carboxyltransferase
1958	 61.04	0	2180077..2181570	-	497	50843454	-	PPA2008	-	oxaloacetate decarboxylase
1959	 63.87	+1	2181891..2183249	-	452	50843455	-	PPA2009	-	putative aerotaxis sensor receptor
1960	 57.19	0	2183676..2184002	+	108	50843456	-	PPA2010	-	hypothetical protein
1961	 59.45	0	2184062..2185087	-	341	50843457	-	PPA2011	-	fructose-bisphosphate aldolase
1962	 59.39	0	2185198..2185788	-	196	50843458	-	PPA2012	-	hypothetical protein
1963	 58.38	0	2185822..2186412	-	196	50843459	-	PPA2013	-	rRNA methylase (SpoU family protein)
1964	 57.61	0	2186460..2187254	+	264	50843460	-	PPA2014	-	DedA family membrane protein
1965	 59.52	0	2187292..2187837	-	181	50843461	-	PPA2015	-	hypothetical protein
1966	 63.43	+1	2187940..2188743	-	267	50843462	-	PPA2016	-	hypothetical protein
1967	 58.24	0	2188740..2189783	-	347	50843463	-	PPA2017	-	periplasmic binding protein of proline/glycine betaine transport system
1968	 62.70	0	2189897..2190274	+	125	50843464	-	PPA2018	-	putative preprotein translocase subunit
1969	 55.49	-1	2190460..2191971	-	503	50843465	-	PPA2020	-	transporter permease
1970	 62.00	0	2192122..2194695	-	857	50843466	-	PPA2021	-	ATP-dependent protease (Clp chaperone)
1971	 63.87	+1	2194985..2196343	+	452	50843467	-	PPA2022	-	branched-chain amino acid transport permease
1972	 59.11	0	2196350..2197024	-	224	50843468	-	PPA2023	-	hypothetical protein
1973	 57.10	0	2197178..2198086	-	302	50843469	-	PPA2024	-	fructose-1,6-bisphosphate aldolase
60.05	MEAN

3.20	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.