IslandPath Analysis: Propionibacterium acnes KPA171202



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 60.05   STD DEV: 3.20
Propionibacterium acnes KPA171202, complete genome - 1..2560265
2297 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
144	 59.60	0	181406..181702	-	98	50841640	-	PPA0151	-	hypothetical protein
145	 61.82	0	181699..183081	-	460	50841641	-	PPA0152	-	putative NADH dehydrogenase
146	 61.42	0	183208..183855	+	215	50841642	-	PPA0154	-	MutT/Nudix family protein
147	 65.16	+1	183837..186353	+	838	50841643	-	PPA0155	-	ATP-dependent helicase
148	 59.68	0	186661..187290	+	209	50841644	-	PPA0156	-	putative ABC-type transporter, permease component
149	 63.57	+1	187287..189386	+	699	50841645	-	PPA0157	-	ABC transporter
150	 62.16	0	189399..190574	-	391	50841646	-	PPA0158	-	putative glycosyl transferase
151	 62.62	0	190665..191084	-	139	50841647	-	PPA0159	-	hypothetical protein
152	 59.65	0	191062..191460	+	132	50841648	-	PPA0160	-	hypothetical protein
153	 61.81	0	191680..192687	-	335	50841649	-	PPA0161	-	dihydroorotate dehydrogenase 2
154	 62.77	0	192711..196325	-	1204	50841650	-	PPA0162	-	pyruvate-flavodoxin oxidoreductase
155	 63.26	+1	196341..198128	-	595	50841651	-	PPA0163	-	putative glutamate synthase (NADPH) small subunit
156	 58.40	0	198350..198724	+	124	50841652	-	PPA0164	-	hypothetical protein
157	 59.85	0	198746..199567	-	273	50841653	-	PPA0165	-	regulator protein
158	 61.57	0	199902..201590	+	562	50841654	-	PPA0166	-	putative L-lactate permease
159	 60.38	0	201645..202439	+	264	50841655	-	PPA0167	-	hypothetical protein
160	 60.94	0	202443..203978	+	511	50841656	-	PPA0168	-	putative iron-sulfur protein
161	 61.53	0	203975..204655	+	226	50841657	-	PPA0169	-	hypothetical protein
162	 61.54	0	204847..205509	+	220	50841658	-	PPA0170	-	putative ABC transporter
163	 62.11	0	205506..206735	+	409	50841659	-	PPA0171	-	hypothetical protein
164	 62.79	0	206732..207325	+	197	50841660	-	PPA0172	-	hypothetical protein
165	 65.30	+1	207350..208954	-	534	50841661	-	PPA0173	-	transport ATP-binding protein, CydCD
166	 65.27	+1	208951..210591	-	546	50841662	-	PPA0174	-	transport ATP-binding protein, CydCD
167	 62.29	0	210595..211668	-	357	50841663	-	PPA0175	-	cytochrome d ubiquinol oxidase, subunit II
168	 60.16	0	211681..213201	-	506	50841664	-	PPA0176	-	cytochrome d ubiquinol oxidase subunit I
169	 59.27	0	213336..214889	-	517	50841665	-	PPA0177	-	putative aminoacid permease
170	 58.67	0	215000..217000	-	666	50841666	-	PPA0178	-	putative ABC transporter
171	 59.47	0	216997..218733	-	578	50841667	-	PPA0179	-	ABC-type transporter
172	 56.58	-1	219005..220114	+	369	50841668	-	PPA0180	-	hypothetical protein
173	 56.76	-1	220111..220665	+	184	50841669	-	PPA2393	-	hypothetical protein
174	 61.58	0	220963..222495	+	510	50841670	lysS	PPA0181	-	lysyl-tRNA synthetase
175	 57.80	0	222534..222815	-	93	50841671	-	PPA0182	-	putative septation inhibitor protein
176	 61.13	0	222937..223767	+	276	50841672	-	PPA0183	-	membrane spanning protein DUF881
177	 61.51	0	223855..225753	-	632	50841673	-	PPA0184	-	putative serine/threonine protein kinase
178	 59.10	0	225800..227227	-	475	50841674	-	PPA0185	-	putative penicillin-binding protein
179	 59.34	0	227224..228615	-	463	50841675	-	PPA0186	-	putative cell division protein
180	 60.15	0	228612..230099	-	495	50841676	-	PPA0187	-	putative protein phosphatase
181	 59.51	0	230103..230591	-	162	50841677	-	PPA0188	-	hypothetical protein
182	 61.01	0	230594..231283	-	229	50841678	-	PPA0189	-	hypothetical protein
183	 65.52	+1	231455..232498	-	347	50841679	-	PPA0190	-	hypothetical protein
184	 62.31	0	232572..233534	-	320	50841680	-	PPA0191	-	hypothetical protein
185	 55.70	-1	234127..234828	-	233	50841681	-	PPA0192	-	hypothetical protein
186	 58.33	0	234838..235749	-	303	50841682	-	PPA0193	-	hypothetical protein
187	 63.90	+1	235924..236754	-	276	50841683	-	PPA0194	-	putative RHS related protein
188	 64.22	+1	236696..237961	-	421	50841684	-	PPA0195	-	putative RHS-family protein
189	 63.09	0	237966..239921	-	651	50841685	-	PPA0196	-	RHS-family protein
190	 57.61	0	240186..241112	+	308	50841686	-	PPA0197	-	hypothetical protein
191	 53.70	-1	241522..242385	+	287	50841687	-	PPA0198	-	hypothetical protein
192	 45.19	-2	243319..243765	-	148	50841688	-	PPA2367	-	hypothetical protein
193	 52.36	-2	243747..244361	-	204	50841689	-	PPA2368	-	hypothetical protein
194	 44.74	-2	244591..245037	-	148	50841690	-	PPA2394	-	hypothetical protein
195	 60.06	0	245019..247880	-	953	50841691	-	PPA0199	-	RHS-family protein
196	 60.22	0	247886..250678	-	930	50841692	-	PPA0200	-	RHS-family protein
197	 53.94	-1	250798..251520	-	240	50841693	-	PPA0201	-	hypothetical protein
198	 63.11	0	251890..252255	-	121	50841694	-	PPA0202	-	putative heat shock protein
199	 59.79	0	252517..252894	+	125	50841695	-	PPA0203	-	hypothetical protein
200	 63.34	+1	253133..255835	+	900	161621801	-	PPA0204	-	DNA polymerase III subunits gamma and tau
201	 63.58	+1	255945..256268	+	107	50841697	-	PPA0205	-	hypothetical protein
202	 59.24	0	256299..256904	+	201	50841698	-	PPA0206	-	putative recombination protein RecR
203	 59.03	0	257012..257587	+	191	50841699	-	PPA0207	-	transcriptional regulator
204	 63.98	+1	257593..258375	+	260	50841700	-	PPA0208	-	ABC transporter ATP-binding protein
205	 61.67	0	258375..261014	+	879	50841701	-	PPA0209	-	putative permease
206	 63.45	+1	261018..262853	-	611	50841702	-	PPA0210	-	membrane spanning protein
207	 61.92	0	262964..263764	+	266	50841703	-	PPA0211	-	putative hydrolase
208	 62.96	0	263774..264583	+	269	50841704	-	PPA0212	-	putative hydrolase
209	 55.67	-1	264701..265600	+	299	50841705	-	PPA0213	-	putative ABC transporter
210	 53.90	-1	265597..266802	+	401	50841706	-	PPA0214	-	hypothetical protein
211	 57.70	0	266814..267404	+	196	50841707	-	PPA0215	-	hypothetical protein
212	 61.61	0	268050..271394	+	1114	50841708	ileS	PPA0216	-	isoleucyl-tRNA synthetase
213	 63.93	+1	271509..272459	-	316	50841709	-	PPA0217	-	membrane associated protein
214	 62.99	0	272440..272847	-	135	50841710	-	PPA2396	-	hypothetical protein
215	 50.56	-2	272911..274326	-	471	50841711	-	PPA0218	-	putative transport protein
216	 60.04	0	274536..275456	-	306	50841712	-	PPA0219	-	putative oxidoreductase
217	 60.67	0	275563..275862	+	99	50841713	-	PPA0220	-	putative regulatory protein
218	 63.60	+1	276029..276484	+	151	50841714	-	PPA0221	-	putative translation initiation inhibitor
219	 63.68	+1	276567..277268	-	233	50841715	-	PPA0222	-	putative transcriptional regulator
220	 62.46	0	277186..278112	+	308	50841716	-	PPA0223	-	putative endonuclease III
221	 62.07	0	278109..278696	+	195	50841717	-	PPA0224	-	hypothetical protein
222	 62.86	0	278693..279349	+	218	50841718	-	PPA0225	-	putative NTP pyrophosphohydrolase
223	 60.34	0	279430..279966	-	178	50841719	-	PPA0226	-	hypothetical protein
224	 60.10	0	280063..281325	-	420	50841720	-	PPA0227	-	putative sodium:proton antiporter
225	 62.19	0	281493..282452	-	319	50841721	-	PPA0228	-	putative methyltransferase
226	 63.29	+1	282461..283438	+	325	50841722	-	PPA0229	-	hypothetical protein
227	 62.90	0	283435..284601	+	388	50841723	-	PPA0230	-	putative secretory protein
228	 63.55	+1	284598..285368	+	256	50841724	-	PPA0231	-	hypothetical protein
229	 62.73	0	285404..286114	+	236	50841725	-	PPA0232	-	hypothetical protein
230	 59.38	0	286323..286610	+	95	50841726	-	PPA0233	-	hypothetical protein
231	 65.40	+1	286703..287017	+	104	50841727	-	PPA0234	-	hypothetical protein
232	 61.23	0	287017..287421	+	134	50841728	-	PPA0235	-	hypothetical protein
233	 55.27	-1	287537..287773	+	78	50841729	-	PPA0236	-	hypothetical protein
234	 62.74	0	287834..290098	-	754	50841730	-	PPA0237	-	putative helicase
235	 61.92	0	290122..291639	+	505	50841731	-	PPA0238	-	putative transferase
236	 60.76	0	291732..292019	+	95	50841732	-	PPA0240	-	hypothetical protein
237	 61.83	0	292242..295031	+	929	50841733	-	PPA0241	-	DNA topoisomerase I
238	 62.63	0	295033..296520	+	495	50841734	-	PPA0242	-	hypothetical protein
239	 62.30	0	296471..297157	+	228	50841735	-	PPA0243	-	putative thymidylate kinase
240	 61.75	0	297213..298412	+	399	50841736	-	PPA0244	-	DNA polymerase III subunit delta'
241	 63.82	+1	298544..299350	+	268	50841737	-	PPA0245	-	hypothetical protein
242	 63.05	0	299425..300087	+	220	50841738	-	PPA0246	-	hypothetical protein
243	 58.94	0	300104..301786	+	560	50841739	-	PPA0247	-	putative hydrolase
60.05	MEAN

3.20	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.