IslandPathversion 1.0

IslandPath Analysis: Propionibacterium acnes KPA171202



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.05 STD DEV: 3.20
Propionibacterium acnes KPA171202, complete genome - 1..2560265
2297 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1831	 61.73	0	2029170..2030363	-	397	50843327	tuf	PPA1873	-	elongation factor Tu
1832	 60.37	0	2030632..2033934	-	1100	50843328	-	PPA1874	-	hypothetical protein
1833	 59.89	0	2034125..2036218	-	697	50843329	-	PPA1875	-	elongation factor G
1834	 61.57	0	2036351..2036821	-	156	50843330	-	PPA1876	-	30S ribosomal protein S7
1835	 62.42	0	2036363..2037352	+	329	50843331	-	PPA1877	-	hypothetical protein
1836	 63.17	0	2036825..2037196	-	123	161621792	rpsL	PPA1878	-	30S ribosomal protein S12
1837	 61.21	0	2037511..2038041	-	176	50843333	-	PPA1879	-	hypothetical protein
1838	 57.11	0	2038194..2039093	-	299	50843334	-	PPA1880	-	putative adhesion or S-layer protein
1839	 59.42	0	2039396..2039809	-	137	50843335	-	PPA1881	-	hypothetical protein
1840	 57.21	0	2039927..2040973	-	348	50843336	-	PPA1882	-	hypothetical protein
1841	 60.18	0	2041158..2045039	-	1293	50843337	-	PPA1883	-	DNA-directed RNA polymerase subunit beta'
1842	 59.71	0	2045208..2048687	-	1159	50843338	rpoB	PPA1884	-	DNA-directed RNA polymerase subunit beta
1843	 63.87	+1	2048986..2049378	-	130	50843339	rplL	PPA1885	-	50S ribosomal protein L7/L12
1844	 64.23	+1	2049392..2050006	-	204	161621791	rplJ	PPA1887	-	50S ribosomal protein L10
1845	 60.94	0	2050434..2051132	-	232	50843341	rplA	PPA1889	-	50S ribosomal protein L1
1846	 59.03	0	2051222..2051653	-	143	50843342	-	PPA1890	-	50S ribosomal protein L11
1847	 57.13	0	2051783..2052694	-	303	50843343	-	PPA1891	-	transcription antitermination protein NusG
1848	 60.22	0	2052718..2053368	-	216	50843344	-	PPA1892	-	putative SecE/Sec61-gamma subunit of protein translocation complex
1849	 59.40	0	2053818..2055083	-	421	50843345	-	PPA1893	-	aminotransferase
1850	 62.42	0	2055187..2056317	-	376	50843346	murB	PPA1894	-	UDP-N-acetylenolpyruvoylglucosamine reductase
1851	 64.75	+1	2056314..2056730	-	138	50843347	-	PPA1895	-	MaoC family protein
1852	 58.97	0	2056727..2057155	-	142	50843348	-	PPA1896	-	hypothetical protein
1853	 61.99	0	2057300..2057470	-	56	50843349	rpmG	PPA1897	-	50S ribosomal protein L33
1854	 62.98	0	2058192..2059085	+	297	50843350	-	PPA1898	-	exodeoxyribonuclease III
1855	 62.35	0	2059087..2060013	-	308	50843351	-	PPA1899	-	enoyl-CoA hydratase/isomerase family protein
1856	 60.59	0	2060119..2061699	-	526	50843352	-	PPA1900	-	hypothetical protein
1857	 60.52	0	2061696..2062004	-	102	50843353	-	PPA1901	-	NADH dehydrogenase subunit
1858	 64.62	+1	2062001..2062585	-	194	50843354	-	PPA1902	-	NADH dehydrogenase subunit
1859	 64.66	+1	2062582..2062980	-	132	50843355	-	PPA1903	-	NADH dehydrogenase subunit
1860	 64.01	+1	2063178..2065100	+	640	50843356	-	PPA1904	-	pyruvate:ferredoxin oxidoreductase (alpha subunit)
1861	 62.71	0	2065102..2066187	+	361	50843357	-	PPA1905	-	2-oxoglutarate ferredoxin oxidoreductase subunit beta
1862	 57.90	0	2066712..2068775	+	687	50843358	-	PPA1906	-	hypothetical protein
1863	 48.09	-2	2068772..2069347	+	191	50843359	-	PPA1907	-	protein associated to putative adhesion protein
1864	 51.26	-2	2069415..2070011	+	198	50843360	-	PPA1908	-	protein associated to putative adhesion protein
1865	 61.52	0	2070668..2072650	+	660	50843361	-	PPA1909	-	M13 family metallopeptidase
1866	 59.40	0	2072718..2073941	-	407	50843362	-	PPA1910	-	ABC transporter permease
1867	 61.93	0	2073938..2074507	-	189	50843363	-	PPA1911	-	ABC transporter, ATP-binding
1868	 57.96	0	2074564..2075493	-	309	50843364	-	PPA1913	-	hypothetical protein
1869	 57.20	0	2075659..2075901	+	80	50843365	-	PPA1914	-	hypothetical protein
1870	 58.88	0	2075901..2076722	+	273	50843366	-	PPA1915	-	ABC transporter, ATP-binding protein
1871	 59.72	0	2076719..2078230	+	503	50843367	-	PPA1916	-	ABC transporter permease
1872	 55.13	-1	2078227..2078538	+	103	50843368	-	PPA1917	-	hypothetical protein
1873	 59.72	0	2078618..2079049	+	143	50843369	-	PPA1918	-	hypothetical protein
1874	 63.74	+1	2079066..2079986	-	306	50843370	-	PPA1919	-	citrate lyase beta chain
1875	 61.17	0	2080022..2080804	-	260	50843371	-	PPA1920	-	precorrin 6A synthase
1876	 61.95	0	2080835..2081809	-	324	50843372	-	PPA1921	-	heptaprenyl diphosphate synthase component II
1877	 62.71	0	2082002..2083618	-	538	50843373	-	PPA1922	-	NADH dehydrogenase subunit N
1878	 60.71	0	2083615..2085108	-	497	50843374	-	PPA1923	-	NADH dehydrogenase subunit M
1879	 60.04	0	2085126..2087012	-	628	50843375	-	PPA1924	-	NADH dehydrogenase subunit L
1880	 56.33	-1	2087023..2087322	-	99	50843376	-	PPA1925	-	NADH dehydrogenase subunit K
1881	 60.12	0	2087319..2088173	-	284	50843377	-	PPA1926	-	NADH dehydrogenase subunit J
1882	 60.64	0	2088173..2088769	-	198	50843378	-	PPA1928	-	NADH dehydrogenase subunit I
1883	 60.24	0	2088769..2090091	-	440	50843379	-	PPA1929	-	NADH dehydrogenase subunit H
1884	 63.80	+1	2090088..2092526	-	812	50843380	-	PPA1930	-	NADH dehydrogenase subunit G
1885	 61.42	0	2092523..2093857	-	444	50843381	-	PPA1931	-	NADH dehydrogenase I chain F
1886	 60.56	0	2093854..2094639	-	261	50843382	-	PPA1932	-	NADH dehydrogenase subunit E
1887	 59.22	0	2094636..2095937	-	433	50843383	-	PPA1933	-	NADH dehydrogenase subunit D
1888	 62.79	0	2095937..2096761	-	274	50843384	-	PPA1934	-	NADH dehydrogenase subunit C
1889	 62.37	0	2096758..2097315	-	185	50843385	-	PPA1935	-	NADH dehydrogenase subunit B
1890	 56.67	-1	2097409..2097768	-	119	50843386	-	PPA1936	-	NADH dehydrogenase subunit A
1891	 60.73	0	2097889..2099151	-	420	50843387	-	PPA1938	-	putative electron transfer oxidoreductase
1892	 61.93	0	2099382..2099867	+	161	50843388	-	PPA1939	-	hypothetical protein
1893	 60.53	0	2099944..2101230	+	428	50843389	-	PPA1940	-	menaquinone-specific isochorismate synthase
1894	 63.79	+1	2101296..2103032	-	578	50843390	-	PPA1941	-	ABC transporter permease
1895	 59.69	0	2103029..2103673	-	214	50843391	-	PPA1942	-	ABC transporter ATP-binding protein
1896	 61.79	0	2103936..2104694	+	252	161621790	ubiE	PPA1943	-	ubiquinone/menaquinone biosynthesis methyltransferase
1897	 61.02	0	2104691..2106514	+	607	50843393	-	PPA1944	-	hypothetical protein
1898	 62.23	0	2106470..2107348	-	292	50843394	-	PPA1945	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
1899	 61.38	0	2107548..2108834	+	428	50843395	-	PPA1946	-	membrane protein, putative permease
1900	 60.45	0	2108896..2109924	+	342	50843396	-	PPA1947	-	hypothetical protein
1901	 62.48	0	2109924..2110568	+	214	50843397	-	PPA1948	-	hypothetical protein
1902	 59.62	0	2110561..2110986	+	141	50843398	-	PPA1949	-	PTS protein, putative dihydroxyacetone kinase phosphotransfer protein
1903	 62.96	0	2111070..2111528	-	152	50843399	-	PPA1950	-	deoxycytidylate deaminase
1904	 58.76	0	2111614..2112549	-	311	50843400	-	PPA1951	-	Co/Zn/Cd cation transporter
1905	 61.08	0	2112772..2113737	+	321	50843401	-	PPA1952	-	L-lactate dehydrogenase
1906	 60.08	0	2113770..2115272	+	500	50843402	-	PPA1953	-	patatin-like phospholipase
1907	 58.85	0	2115351..2116169	-	272	50843403	-	PPA1954	-	sugar phosphatase/hydrolase
1908	 61.87	0	2116246..2118102	-	618	50843404	-	PPA1955	-	hypothetical protein
1909	 62.43	0	2118266..2119399	-	377	50843405	-	PPA1957	-	ROK family transcriptional regulator
1910	 62.73	0	2119541..2121193	+	550	50843406	-	PPA1958	-	hypothetical protein
1911	 58.55	0	2121190..2122125	+	311	50843407	-	PPA1959	-	binding-protein-dependent transport permease
1912	 57.61	0	2122118..2123044	+	308	50843408	-	PPA1960	-	binding-protein-dependent transport permease
1913	 57.90	0	2123055..2124377	+	440	50843409	-	PPA1961	-	sugar-binding periplasmic protein
1914	 64.10	+1	2125018..2126265	+	415	50843410	-	PPA1962	-	putative cell wall-associated hydrolase
1915	 58.58	0	2127186..2128112	-	308	50843411	-	PPA1964	-	binding-protein-dependent transport permease
1916	 56.08	-1	2128112..2129008	-	298	50843412	-	PPA1965	-	binding-protein-dependent transport permease
1917	 59.02	0	2129137..2130444	-	435	50843413	-	PPA1966	-	extracellular solute-binding protein
1918	 60.08	0	2130592..2131548	-	318	50843414	-	PPA1967	-	putative lysophospholipase
1919	 58.43	0	2131564..2131818	-	84	50843415	-	PPA1968	-	hypothetical protein
1920	 62.08	0	2131903..2132970	-	355	50843416	-	PPA1969	-	phosphoribosylaminoimidazole synthetase
1921	 62.30	0	2132967..2134454	-	495	50843417	-	PPA1970	-	amidophosphoribosyltransferase
1922	 65.06	+1	2134549..2135793	-	414	50843418	-	PPA1971	-	hypothetical protein
1923	 64.36	+1	2135978..2137321	-	447	50843419	-	PPA1972	-	hypothetical protein
1924	 61.33	0	2137463..2138230	-	255	50843420	-	PPA1973	-	stomatin/prohibitin-like protein
1925	 64.54	+1	2138227..2139024	-	265	50843421	-	PPA1974	-	hypothetical protein
1926	 59.68	0	2139021..2141267	-	748	50843422	-	PPA1975	-	nitric-oxide reductase subunit B
1927	 62.21	0	2141513..2143600	+	695	50843423	-	PPA1976	-	para-aminobenzoate synthase
1928	 62.67	0	2143587..2145839	-	750	50843424	-	PPA1977	-	phosphoribosylformylglycinamidine synthase II
1929	 61.94	0	2146030..2147277	+	415	50843425	-	PPA1978	-	major facilitator superfamily permease
1930	 61.03	0	2147287..2149821	-	844	50843426	-	PPA1979	-	aminopeptidase N
60.05	MEAN

3.20	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.