IslandPathversion 1.0

IslandPath Analysis: Propionibacterium acnes KPA171202



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.05 STD DEV: 3.20
Propionibacterium acnes KPA171202, complete genome - 1..2560265
2297 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1778	 54.34	-1	1982509..1983003	+	164	50843274	-	PPA2364	-	hypothetical protein
1779	 58.25	0	1983161..1983778	+	205	50843275	-	PPA1818	-	superoxide dismutase [Mn/Fe]
1780	 61.52	0	1984010..1984534	+	174	50843276	-	PPA1819	-	beta-galactosidase
1781	 64.58	+1	1984531..1988787	+	1418	50843277	-	PPA1820	-	beta-galactosidase fused to beta-N-acetylhexosaminidase
1782	 65.25	+1	1989016..1990425	+	469	50843278	-	PPA1821	-	putative sialidase
1783	 60.12	0	1990761..1992134	+	457	50843279	-	PPA1822	-	organic anion transporter family protein
1784	 63.67	+1	1992150..1992782	-	210	50843280	-	PPA1823	-	hypothetical protein
1785	 64.37	+1	1992782..1993999	-	405	50843281	-	PPA1824	-	glycosyl transferase
1786	 64.99	+1	1994109..1994645	-	178	50843282	-	PPA1825	-	50S ribosomal protein L17
1787	 60.18	0	1994948..1995964	-	338	50843283	-	PPA1826	-	DNA-directed RNA polymerase subunit alpha
1788	 60.56	0	1996210..1996815	-	201	50843284	rpsD	PPA1827	-	30S ribosomal protein S4
1789	 63.73	+1	1996846..1997253	-	135	50843285	-	PPA1828	-	30S ribosomal protein S11
1790	 64.25	+1	1997325..1997696	-	123	50843286	rpsM	PPA1829	-	30S ribosomal protein S13
1791	 57.89	0	1998075..1998188	-	37	50843287	rpmJ	PPA1831	-	50S ribosomal protein L36
1792	 58.11	0	1998267..1998488	-	73	50843288	-	PPA1832	-	translation initiation factor IF-1
1793	 63.57	+1	1998703..1999542	-	279	50843289	-	PPA1833	-	methionine aminopeptidase
1794	 60.00	0	1999544..2000113	-	189	50843290	adk	PPA1834	-	adenylate kinase
1795	 56.29	-1	2000110..2001429	-	439	50843291	secY	PPA1835	-	preprotein translocase subunit SecY
1796	 60.25	0	2001599..2002237	+	212	50843292	-	PPA1836	-	hypothetical protein
1797	 54.92	-1	2002227..2003435	-	402	50843293	-	PPA1837	-	membrane protein, putative permease
1798	 57.23	0	2003493..2003651	-	52	50843294	-	PPA1838	-	hypothetical protein
1799	 53.95	-1	2003665..2004411	-	248	50843295	-	PPA1839	-	glycerophosphoryl diester phosphodiesterase
1800	 58.10	0	2004533..2006236	-	567	50843296	-	PPA1840	-	extracellular solute-binding transport protein, putative oligopeptide-binding protein
1801	 55.42	-1	2006430..2006678	-	82	50843297	-	PPA1841	-	hypothetical protein
1802	 55.44	-1	2006718..2007002	-	94	50843298	-	PPA2365	-	hypothetical protein
1803	 59.41	0	2007192..2007632	-	146	50843299	rplO	PPA1842	-	50S ribosomal protein L15
1804	 59.02	0	2007634..2007816	-	60	50843300	rpmD	PPA1843	-	50S ribosomal protein L30
1805	 64.66	+1	2007816..2008463	-	215	50843301	rpsE	PPA1844	-	30S ribosomal protein S5
1806	 64.06	+1	2008488..2008871	-	127	50843302	-	PPA1845	-	50S ribosomal protein L18
1807	 59.85	0	2008873..2009415	-	180	50843303	rplF	PPA1846	-	50S ribosomal protein L6
1808	 61.27	0	2009444..2009851	-	135	50843304	rpsH	PPA1848	-	30S ribosomal protein S8
1809	 61.83	0	2010011..2010196	-	61	50843305	rpsN	PPA1849	-	30S ribosomal protein S14
1810	 59.56	0	2010204..2010836	-	210	50843306	rplE	PPA1850	-	50S ribosomal protein L5
1811	 62.60	0	2010833..2011201	-	122	50843307	-	PPA1851	-	50S ribosomal protein L24
1812	 61.52	0	2011202..2011570	-	122	50843308	-	PPA1852	-	50S ribosomal protein L14
1813	 60.07	0	2012167..2012439	-	90	50843309	-	PPA1853	-	30S ribosomal protein S17
1814	 58.97	0	2012442..2012675	-	77	50843310	-	PPA1855	-	50S ribosomal protein L29
1815	 60.00	0	2012675..2013094	-	139	50843311	rplP	PPA1856	-	50S ribosomal protein L16
1816	 64.94	+1	2013096..2013905	-	269	50843312	rpsC	PPA1857	-	30S ribosomal protein S3
1817	 63.64	+1	2013907..2014368	-	153	50843313	-	PPA1858	-	50S ribosomal protein L22
1818	 61.35	0	2014386..2014667	-	93	50843314	-	PPA1859	-	30S ribosomal protein S19
1819	 62.96	0	2014683..2015519	-	278	50843315	rplB	PPA1860	-	50S ribosomal protein L2
1820	 59.22	0	2015546..2015854	-	102	50843316	rplW	PPA1861	-	50S ribosomal protein L23
1821	 62.36	0	2015851..2016756	-	301	50843317	-	PPA1862	-	50S ribosomal protein L4
1822	 65.33	+1	2016753..2017424	-	223	50843318	-	PPA1863	-	50S ribosomal protein L3
1823	 62.50	0	2017436..2017747	-	103	50843319	rpsJ	PPA1865	-	30S ribosomal protein S10
1824	 62.39	0	2018260..2020221	+	653	50843320	-	PPA1866	-	8-amino-7-oxononanoate synthase
1825	 60.50	0	2020202..2021434	-	410	50843321	-	PPA1867	-	hypothetical protein
1826	 59.09	0	2021552..2021881	-	109	50843322	-	PPA1868	-	hypothetical protein
1827	 57.83	0	2021881..2023374	-	497	50843323	-	PPA1869	-	glutamyl-tRNA synthetase
1828	 60.54	0	2023428..2025125	+	565	50843324	-	PPA1870	-	glutaminyl-tRNA synthetase
1829	 59.53	0	2025228..2027174	+	648	50843325	-	PPA1871	-	2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor
1830	 58.63	0	2027181..2029046	+	621	50843326	-	PPA1872	-	membrane-spanning protein
1831	 61.73	0	2029170..2030363	-	397	50843327	tuf	PPA1873	-	elongation factor Tu
1832	 60.37	0	2030632..2033934	-	1100	50843328	-	PPA1874	-	hypothetical protein
1833	 59.89	0	2034125..2036218	-	697	50843329	-	PPA1875	-	elongation factor G
1834	 61.57	0	2036351..2036821	-	156	50843330	-	PPA1876	-	30S ribosomal protein S7
1835	 62.42	0	2036363..2037352	+	329	50843331	-	PPA1877	-	hypothetical protein
1836	 63.17	0	2036825..2037196	-	123	161621792	rpsL	PPA1878	-	30S ribosomal protein S12
1837	 61.21	0	2037511..2038041	-	176	50843333	-	PPA1879	-	hypothetical protein
1838	 57.11	0	2038194..2039093	-	299	50843334	-	PPA1880	-	putative adhesion or S-layer protein
1839	 59.42	0	2039396..2039809	-	137	50843335	-	PPA1881	-	hypothetical protein
1840	 57.21	0	2039927..2040973	-	348	50843336	-	PPA1882	-	hypothetical protein
1841	 60.18	0	2041158..2045039	-	1293	50843337	-	PPA1883	-	DNA-directed RNA polymerase subunit beta'
1842	 59.71	0	2045208..2048687	-	1159	50843338	rpoB	PPA1884	-	DNA-directed RNA polymerase subunit beta
1843	 63.87	+1	2048986..2049378	-	130	50843339	rplL	PPA1885	-	50S ribosomal protein L7/L12
1844	 64.23	+1	2049392..2050006	-	204	161621791	rplJ	PPA1887	-	50S ribosomal protein L10
1845	 60.94	0	2050434..2051132	-	232	50843341	rplA	PPA1889	-	50S ribosomal protein L1
1846	 59.03	0	2051222..2051653	-	143	50843342	-	PPA1890	-	50S ribosomal protein L11
1847	 57.13	0	2051783..2052694	-	303	50843343	-	PPA1891	-	transcription antitermination protein NusG
1848	 60.22	0	2052718..2053368	-	216	50843344	-	PPA1892	-	putative SecE/Sec61-gamma subunit of protein translocation complex
1849	 59.40	0	2053818..2055083	-	421	50843345	-	PPA1893	-	aminotransferase
1850	 62.42	0	2055187..2056317	-	376	50843346	murB	PPA1894	-	UDP-N-acetylenolpyruvoylglucosamine reductase
1851	 64.75	+1	2056314..2056730	-	138	50843347	-	PPA1895	-	MaoC family protein
1852	 58.97	0	2056727..2057155	-	142	50843348	-	PPA1896	-	hypothetical protein
1853	 61.99	0	2057300..2057470	-	56	50843349	rpmG	PPA1897	-	50S ribosomal protein L33
1854	 62.98	0	2058192..2059085	+	297	50843350	-	PPA1898	-	exodeoxyribonuclease III
1855	 62.35	0	2059087..2060013	-	308	50843351	-	PPA1899	-	enoyl-CoA hydratase/isomerase family protein
1856	 60.59	0	2060119..2061699	-	526	50843352	-	PPA1900	-	hypothetical protein
1857	 60.52	0	2061696..2062004	-	102	50843353	-	PPA1901	-	NADH dehydrogenase subunit
1858	 64.62	+1	2062001..2062585	-	194	50843354	-	PPA1902	-	NADH dehydrogenase subunit
1859	 64.66	+1	2062582..2062980	-	132	50843355	-	PPA1903	-	NADH dehydrogenase subunit
1860	 64.01	+1	2063178..2065100	+	640	50843356	-	PPA1904	-	pyruvate:ferredoxin oxidoreductase (alpha subunit)
1861	 62.71	0	2065102..2066187	+	361	50843357	-	PPA1905	-	2-oxoglutarate ferredoxin oxidoreductase subunit beta
1862	 57.90	0	2066712..2068775	+	687	50843358	-	PPA1906	-	hypothetical protein
1863	 48.09	-2	2068772..2069347	+	191	50843359	-	PPA1907	-	protein associated to putative adhesion protein
1864	 51.26	-2	2069415..2070011	+	198	50843360	-	PPA1908	-	protein associated to putative adhesion protein
1865	 61.52	0	2070668..2072650	+	660	50843361	-	PPA1909	-	M13 family metallopeptidase
1866	 59.40	0	2072718..2073941	-	407	50843362	-	PPA1910	-	ABC transporter permease
1867	 61.93	0	2073938..2074507	-	189	50843363	-	PPA1911	-	ABC transporter, ATP-binding
1868	 57.96	0	2074564..2075493	-	309	50843364	-	PPA1913	-	hypothetical protein
1869	 57.20	0	2075659..2075901	+	80	50843365	-	PPA1914	-	hypothetical protein
1870	 58.88	0	2075901..2076722	+	273	50843366	-	PPA1915	-	ABC transporter, ATP-binding protein
1871	 59.72	0	2076719..2078230	+	503	50843367	-	PPA1916	-	ABC transporter permease
1872	 55.13	-1	2078227..2078538	+	103	50843368	-	PPA1917	-	hypothetical protein
1873	 59.72	0	2078618..2079049	+	143	50843369	-	PPA1918	-	hypothetical protein
1874	 63.74	+1	2079066..2079986	-	306	50843370	-	PPA1919	-	citrate lyase beta chain
1875	 61.17	0	2080022..2080804	-	260	50843371	-	PPA1920	-	precorrin 6A synthase
1876	 61.95	0	2080835..2081809	-	324	50843372	-	PPA1921	-	heptaprenyl diphosphate synthase component II
1877	 62.71	0	2082002..2083618	-	538	50843373	-	PPA1922	-	NADH dehydrogenase subunit N
60.05	MEAN

3.20	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.