IslandPathversion 1.0

IslandPath Analysis: Propionibacterium acnes KPA171202



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.05 STD DEV: 3.20
Propionibacterium acnes KPA171202, complete genome - 1..2560265
2297 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1690	 63.52	+1	1880724..1882376	+	550	50843186	-	PPA1726	-	major facilitator superfamily permease
1691	 61.18	0	1882586..1883296	+	236	50843187	-	PPA1727	-	putative DNA polymerase III epsilon subunit (exonuclease)
1692	 58.35	0	1883298..1885076	-	592	161621793	-	PPA1728	-	methionyl-tRNA synthetase
1693	 63.57	+1	1885186..1886088	-	300	50843189	-	PPA1729	-	ribonuclease H
1694	 61.00	0	1886085..1886525	-	146	50843190	-	PPA1730	-	cytidine deaminase
1695	 58.57	0	1886500..1887858	-	452	50843191	-	PPA1731	-	ABC transporter associated permease
1696	 59.83	0	1887855..1889126	-	423	50843192	-	PPA1732	-	ABC transporter associated permease
1697	 59.75	0	1889123..1890712	-	529	50843193	-	PPA1733	-	ABC transporter ATP-binding protein
1698	 57.46	0	1890848..1892107	-	419	50843194	-	PPA1734	-	basic membrane lipoprotein
1699	 61.35	0	1892174..1893415	-	413	50843195	-	PPA1735	-	hypothetical protein
1700	 58.42	0	1893412..1894818	-	468	50843196	-	PPA1736	-	hypothetical protein
1701	 60.57	0	1894946..1896094	-	382	50843197	-	PPA1737	-	hypothetical protein
1702	 59.91	0	1896091..1898295	-	734	50843198	-	PPA1738	-	isocitrate dehydrogenase [NADP]
1703	 59.27	0	1898491..1899342	+	283	50843199	-	PPA1739	-	formyltetrahydrofolate deformylase
1704	 61.48	0	1899521..1900504	+	327	50843200	-	PPA1740	-	malate dehydrogenase
1705	 60.64	0	1900932..1902275	+	447	50843201	-	PPA1741	-	putative propionaldehyde dehydrogenase / ethanolamine utilization protein EutE
1706	 60.47	0	1902425..1902763	-	112	50843202	-	PPA1742	-	hypothetical protein
1707	 62.96	0	1902760..1903623	-	287	50843203	-	PPA1743	-	methylenetetrahydrofolate cyclohydrolase
1708	 60.46	0	1903638..1904603	-	321	50843204	-	PPA1744	-	hypothetical protein
1709	 62.87	0	1904704..1907259	+	851	50843205	-	PPA1745	-	hypothetical protein
1710	 64.59	+1	1907271..1907897	+	208	50843206	-	PPA1746	-	hypothetical protein
1711	 64.15	+1	1907975..1909525	-	516	50843207	purH	PPA1747	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
1712	 61.38	0	1909522..1910145	-	207	50843208	purN	PPA1748	-	phosphoribosylglycinamide formyltransferase
1713	 62.28	0	1910170..1910670	-	166	50843209	ribH	PPA1749	-	riboflavin synthase subunit beta
1714	 64.62	+1	1910667..1911983	-	438	50843210	-	PPA1750	-	riboflavin biosynthesis protein RibA
1715	 61.67	0	1911977..1912576	-	199	50843211	-	PPA1751	-	riboflavin synthase subunit alpha
1716	 66.37	+1	1912584..1913579	-	331	50843212	-	PPA1752	-	riboflavin biosynthesis protein RibD
1717	 61.85	0	1913865..1915358	-	497	50843213	-	PPA1753	-	hypothetical protein
1718	 62.64	0	1915508..1916401	-	297	50843214	-	PPA1754	-	succinyl-CoA synthetase subunit alpha
1719	 62.24	0	1916405..1917580	-	391	50843215	sucC	PPA1755	-	succinyl-CoA synthetase subunit beta
1720	 55.73	-1	1917807..1920239	-	810	50843216	-	PPA1756	-	ATP-dependent DNA helicase
1721	 61.22	0	1920236..1920547	-	103	50843217	-	PPA1757	-	hypothetical protein
1722	 57.11	0	1920676..1921638	+	320	50843218	-	PPA1758	-	outer membrane lipoprotein
1723	 59.47	0	1921670..1922767	+	365	50843219	-	PPA1759	-	ABC transporter ATP-binding protein
1724	 59.48	0	1922767..1923420	+	217	50843220	-	PPA1760	-	ABC transporter associated permease
1725	 58.79	0	1923523..1924791	+	422	50843221	-	PPA1761	-	cardiolipin synthetase
1726	 57.20	0	1924939..1925202	+	87	50843222	-	PPA1762	-	hypothetical protein
1727	 61.75	0	1925432..1925716	+	94	50843223	-	PPA1763	-	hypothetical protein
1728	 60.95	0	1925968..1927560	-	530	50843224	guaA	PPA1764	-	bifunctional GMP synthase/glutamine amidotransferase protein
1729	 63.35	+1	1927718..1928290	+	190	50843225	-	PPA1765	-	serine acetyltransferase
1730	 61.78	0	1928299..1928646	-	115	50843226	-	PPA1766	-	chorismate mutase
1731	 63.32	+1	1928704..1929807	-	367	50843227	-	PPA1767	-	inositol-5-monophosphate dehydrogenase
1732	 59.93	0	1929841..1931355	-	504	50843228	-	PPA1768	-	IMP dehydrogenase / GMP reductase
1733	 61.33	0	1931453..1932895	-	480	50843229	-	PPA1769	-	hypothetical protein
1734	 58.97	0	1933262..1935016	+	584	50843230	-	PPA1770	-	sodium:alanine symporter family protein
1735	 58.55	0	1935137..1935826	-	229	50843231	-	PPA1771	-	hypothetical protein
1736	 62.16	0	1936034..1937629	-	531	50843232	groEL	PPA1772	-	chaperonin GroEL
1737	 63.30	+1	1937641..1937937	-	98	50843233	-	PPA1773	-	10 kDa chaperonin
1738	 57.81	0	1938143..1939147	-	334	50843234	-	PPA1774	-	hypothetical protein
1739	 55.85	-1	1939267..1940061	-	264	50843235	-	PPA1775	-	hypothetical protein
1740	 60.17	0	1940066..1941265	-	399	50843236	-	PPA1776	-	hypothetical protein
1741	 58.02	0	1941294..1941941	+	215	50843237	-	PPA1777	-	hypothetical protein
1742	 61.35	0	1941968..1942720	-	250	50843238	-	PPA1778	-	Fe(III) dicitrate ABC transporter, ATP-binding protein
1743	 60.55	0	1942717..1943811	-	364	50843239	-	PPA1779	-	Fe(III) dicitrate ABC transporter, permease
1744	 53.76	-1	1943819..1944988	-	389	50843240	-	PPA1780	-	periplasmic binding protein
1745	 59.96	0	1945114..1945605	-	163	50843241	-	PPA1781	-	putative 7,8-dihydro-8-oxoguanine-triphosphatase
1746	 63.41	+1	1945719..1946762	-	347	50843242	-	PPA1782	-	putative O-sialoglycoprotein endopeptidase
1747	 62.82	0	1946755..1947222	-	155	50843243	-	PPA1783	-	ribosomal-protein-alanine acetyltransferase
1748	 64.84	+1	1947219..1947875	-	218	50843244	-	PPA1784	-	M22 family peptidase
1749	 63.98	+1	1947875..1948768	-	297	50843245	-	PPA1785	-	nucleotide-binding protein (P-loop hydrolase)
1750	 63.17	0	1948947..1949660	+	237	50843246	-	PPA1786	-	hypothetical protein
1751	 64.00	+1	1949670..1951772	-	700	50843247	-	PPA1787	-	ATP-dependent RNA helicase
1752	 63.03	0	1951787..1951951	+	54	50843248	-	PPA1788	-	hypothetical protein
1753	 57.18	0	1952124..1954463	-	779	50843249	-	PPA1789	-	putative ABC transporter-associated permease
1754	 57.09	0	1954463..1955203	-	246	50843250	-	PPA1790	-	ABC transporter ATP-binding protein
1755	 51.85	-2	1955197..1955682	-	161	50843251	-	PPA2362	-	hypothetical protein
1756	 60.71	0	1955838..1956929	+	363	50843252	-	PPA1791	-	glycosyl transferase
1757	 61.96	0	1956973..1958418	-	481	50843253	-	PPA1792	-	hypothetical protein
1758	 60.68	0	1958509..1958892	-	127	50843254	acpS	PPA1793	-	4'-phosphopantetheinyl transferase
1759	 60.50	0	1958978..1960891	-	637	50843255	-	PPA1794	-	D-fructose-6-phosphate amidotransferase
1760	 58.63	0	1961005..1962024	+	339	50843256	-	PPA1796	-	triacylglycerol lipase precursor
1761	 60.98	0	1963291..1964274	+	327	50843257	-	PPA1799	-	pantothenate kinase
1762	 62.81	0	1964319..1964966	-	215	50843258	-	PPA1800	-	hypothetical protein
1763	 60.61	0	1965078..1966430	-	450	50843259	-	PPA1801	-	phosphoglucomutase/phosphomannomutase
1764	 64.94	+1	1966656..1967177	-	173	50843260	rpsI	PPA1802	-	30S ribosomal protein S9
1765	 63.96	+1	1967200..1967643	-	147	50843261	rplM	PPA1803	-	50S ribosomal protein L13
1766	 62.79	0	1967907..1971155	-	1082	50843262	-	PPA1805	-	endo-beta-N-acetylglucosaminidase family protein
1767	 62.91	0	1971306..1972211	+	301	50843263	-	PPA1806	-	hypothetical protein
1768	 59.52	0	1972331..1972624	-	97	50843264	-	PPA1807	-	hypothetical protein
1769	 65.40	+1	1972797..1973741	+	314	50843265	-	PPA1808	-	methyltransferase
1770	 66.90	+2	1973738..1974577	+	279	50843266	truA	PPA1809	-	tRNA pseudouridine synthase A
1771	 63.93	+1	1974574..1975194	+	206	50843267	-	PPA1810	-	hypothetical protein
1772	 64.37	+1	1975263..1976525	+	420	50843268	-	PPA1812	-	ABC transporter-associated permease
1773	 64.86	+1	1976522..1978177	+	551	50843269	-	PPA1813	-	ABC transporter, ATP-binding protein
1774	 61.55	0	1978174..1978935	+	253	50843270	-	PPA1814	-	putative ABC transporter-associated permease
1775	 61.42	0	1978988..1979749	-	253	50843271	fabG	PPA1815	-	3-ketoacyl-(acyl-carrier-protein) reductase
1776	 63.51	+1	1979842..1981455	-	537	50843272	-	PPA1816	-	ABC transporter associated permease
1777	 62.95	0	1981437..1982270	-	277	50843273	-	PPA1817	-	ABC transporter ATP-binding protein
1778	 54.34	-1	1982509..1983003	+	164	50843274	-	PPA2364	-	hypothetical protein
1779	 58.25	0	1983161..1983778	+	205	50843275	-	PPA1818	-	superoxide dismutase [Mn/Fe]
1780	 61.52	0	1984010..1984534	+	174	50843276	-	PPA1819	-	beta-galactosidase
1781	 64.58	+1	1984531..1988787	+	1418	50843277	-	PPA1820	-	beta-galactosidase fused to beta-N-acetylhexosaminidase
1782	 65.25	+1	1989016..1990425	+	469	50843278	-	PPA1821	-	putative sialidase
1783	 60.12	0	1990761..1992134	+	457	50843279	-	PPA1822	-	organic anion transporter family protein
1784	 63.67	+1	1992150..1992782	-	210	50843280	-	PPA1823	-	hypothetical protein
1785	 64.37	+1	1992782..1993999	-	405	50843281	-	PPA1824	-	glycosyl transferase
1786	 64.99	+1	1994109..1994645	-	178	50843282	-	PPA1825	-	50S ribosomal protein L17
1787	 60.18	0	1994948..1995964	-	338	50843283	-	PPA1826	-	DNA-directed RNA polymerase subunit alpha
1788	 60.56	0	1996210..1996815	-	201	50843284	rpsD	PPA1827	-	30S ribosomal protein S4
1789	 63.73	+1	1996846..1997253	-	135	50843285	-	PPA1828	-	30S ribosomal protein S11
60.05	MEAN

3.20	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.