IslandPathversion 1.0

IslandPath Analysis: Propionibacterium acnes KPA171202



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.05 STD DEV: 3.20
Propionibacterium acnes KPA171202, complete genome - 1..2560265
2297 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1635	 55.44	-1	1820967..1821857	-	296	50843131	-	PPA1668	-	RpiR family transcriptional regulator
1636	 57.47	0	1822215..1824128	+	637	50843132	-	PPA1669	-	membrane-spanning protein
1637	 61.02	0	1824180..1825577	-	465	50843133	-	PPA1670	-	DNA polymerase IV
1638	 59.45	0	1825574..1826044	-	156	50843134	-	PPA1671	-	dihydrofolate reductase
1639	 59.14	0	1826088..1826897	-	269	50843135	thyA	PPA1672	-	thymidylate synthase
1640	 60.49	0	1826898..1827512	-	204	50843136	-	PPA1673	-	putative nucleoside-triphosphatase
1641	 60.65	0	1827509..1828273	-	254	50843137	rph	PPA1674	-	ribonuclease PH
1642	 58.17	0	1828307..1829200	-	297	50843138	-	PPA1675	-	glutamate racemase
1643	 63.64	+1	1829333..1829662	+	109	50843139	-	PPA1676	-	ferrous iron transport protein A
1644	 62.44	0	1829723..1831687	+	654	50843140	-	PPA1677	-	ferrous iron transport protein B
1645	 64.65	+1	1831684..1832229	+	181	50843141	-	PPA1678	-	hypothetical protein
1646	 58.29	0	1832481..1833077	-	198	50843142	-	PPA1680	-	hypothetical protein
1647	 63.31	+1	1833164..1834504	+	446	50843143	-	PPA1681	-	nicotinate phosphoribosyltransferase
1648	 61.59	0	1834697..1834972	+	91	50843144	-	PPA1682	-	DNA-binding protein HU
1649	 61.12	0	1835077..1837185	-	702	50843145	-	PPA1683	-	4-alpha-glucanotransferase (amylomaltase)
1650	 61.19	0	1837276..1838097	-	273	50843146	-	PPA1684	-	hypothetical protein
1651	 60.27	0	1838405..1838701	+	98	50843147	-	PPA1685	-	hypothetical protein
1652	 58.33	0	1838726..1839157	-	143	50843148	-	PPA1686	-	3-dehydroquinate dehydratase
1653	 57.85	0	1839154..1840185	-	343	50843149	-	PPA1687	-	cation transport protein
1654	 64.02	+1	1840182..1841201	-	339	50843150	-	PPA1688	-	hypothetical protein
1655	 60.93	0	1841198..1841476	-	92	50843151	-	PPA1689	-	hypothetical protein
1656	 64.94	+1	1841486..1841947	-	153	50843152	-	PPA1690	-	hypothetical protein
1657	 62.14	0	1841927..1842412	+	161	50843153	-	PPA1691	-	hypothetical protein
1658	 61.21	0	1842418..1843920	-	500	50843154	-	PPA1692	-	hypothetical protein
1659	 63.06	0	1843917..1847246	-	1109	50843155	-	PPA1693	-	putative glycosyl transferase
1660	 59.30	0	1847395..1847652	-	85	50843156	-	PPA1694	-	transcription factor WhiB
1661	 61.06	0	1847829..1848524	-	231	50843157	-	PPA1695	-	hypothetical protein
1662	 59.15	0	1848521..1849597	-	358	50843158	-	PPA1696	-	mannose-1-phosphate guanylyltransferase
1663	 61.07	0	1849665..1850396	+	243	50843159	-	PPA1697	-	hypothetical protein
1664	 60.02	0	1850399..1851421	-	340	50843160	-	PPA1698	-	succinoglycan biosynthesis protein ExoA
1665	 62.15	0	1851527..1852810	+	427	50843161	-	PPA1699	-	cell envelope-related transcriptional attenuator
1666	 61.46	0	1853030..1855987	+	985	50843162	-	PPA1700	-	beta-galactosidase
1667	 63.62	+1	1856048..1856638	-	196	50843163	-	PPA1701	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
1668	 61.47	0	1856631..1857803	-	390	50843164	-	PPA1702	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
1669	 58.57	0	1857910..1858440	+	176	50843165	-	PPA1703	-	hypothetical protein
1670	 62.07	0	1858427..1859101	-	224	50843166	-	PPA1704	-	peptidase S51 family protein
1671	 59.64	0	1859191..1860030	-	279	50843167	-	PPA1705	-	putative BirA bifunctional protein
1672	 62.10	0	1860162..1860533	+	123	50843168	-	PPA1706	-	hypothetical protein
1673	 60.44	0	1860626..1862200	+	524	50843169	-	PPA1707	-	propionyl-CoA carboxylase beta chain
1674	 60.65	0	1862212..1862427	+	71	50843170	-	PPA1708	-	hypothetical protein
1675	 62.01	0	1862405..1863070	+	221	50843171	-	PPA1709	-	Maf-like protein
1676	 60.48	0	1863645..1864064	-	139	50843172	-	PPA1710	-	hypothetical protein
1677	 63.27	+1	1864261..1864995	+	244	50843173	-	PPA1711	-	short chain dehydrogenase
1678	 60.82	0	1865099..1866004	-	301	50843174	-	PPA1712	-	phosphomethylpyrimidine kinase
1679	 57.24	0	1868063..1869463	+	466	50843175	-	PPA1715	-	hypothetical protein
1680	 56.46	-1	1869663..1870661	-	332	50843176	-	PPA1716	-	putative magnesium transport protein
1681	 61.94	0	1870658..1871059	-	133	50843177	-	PPA1717	-	hypothetical protein
1682	 55.81	-1	1871132..1871389	+	85	50843178	-	PPA1718	-	hypothetical protein
1683	 62.20	0	1871425..1873194	+	589	50843179	-	PPA1719	-	putative biotin-dependent acetyl/propionyl-CoA (acyl-CoA) carboxylase
1684	 61.72	0	1873290..1873976	+	228	50843180	-	PPA1720	-	hypothetical protein
1685	 61.38	0	1874015..1875394	-	459	50843181	-	PPA1721	-	flavoprotein disulfide reductase
1686	 63.22	0	1875582..1876394	+	270	50843182	-	PPA1722	-	purine nucleoside phosphorylase
1687	 62.73	0	1876421..1878097	+	558	50843183	-	PPA1723	-	phosphoglucomutase/phosphomannomutase
1688	 62.54	0	1878129..1879802	-	557	50843184	-	PPA1724	-	putative fatty acid--CoA ligase (AMP-binding enzyme)
1689	 61.16	0	1879989..1880642	+	217	50843185	-	PPA1725	-	putative uridine kinase
1690	 63.52	+1	1880724..1882376	+	550	50843186	-	PPA1726	-	major facilitator superfamily permease
1691	 61.18	0	1882586..1883296	+	236	50843187	-	PPA1727	-	putative DNA polymerase III epsilon subunit (exonuclease)
1692	 58.35	0	1883298..1885076	-	592	161621793	-	PPA1728	-	methionyl-tRNA synthetase
1693	 63.57	+1	1885186..1886088	-	300	50843189	-	PPA1729	-	ribonuclease H
1694	 61.00	0	1886085..1886525	-	146	50843190	-	PPA1730	-	cytidine deaminase
1695	 58.57	0	1886500..1887858	-	452	50843191	-	PPA1731	-	ABC transporter associated permease
1696	 59.83	0	1887855..1889126	-	423	50843192	-	PPA1732	-	ABC transporter associated permease
1697	 59.75	0	1889123..1890712	-	529	50843193	-	PPA1733	-	ABC transporter ATP-binding protein
1698	 57.46	0	1890848..1892107	-	419	50843194	-	PPA1734	-	basic membrane lipoprotein
1699	 61.35	0	1892174..1893415	-	413	50843195	-	PPA1735	-	hypothetical protein
1700	 58.42	0	1893412..1894818	-	468	50843196	-	PPA1736	-	hypothetical protein
1701	 60.57	0	1894946..1896094	-	382	50843197	-	PPA1737	-	hypothetical protein
1702	 59.91	0	1896091..1898295	-	734	50843198	-	PPA1738	-	isocitrate dehydrogenase [NADP]
1703	 59.27	0	1898491..1899342	+	283	50843199	-	PPA1739	-	formyltetrahydrofolate deformylase
1704	 61.48	0	1899521..1900504	+	327	50843200	-	PPA1740	-	malate dehydrogenase
1705	 60.64	0	1900932..1902275	+	447	50843201	-	PPA1741	-	putative propionaldehyde dehydrogenase / ethanolamine utilization protein EutE
1706	 60.47	0	1902425..1902763	-	112	50843202	-	PPA1742	-	hypothetical protein
1707	 62.96	0	1902760..1903623	-	287	50843203	-	PPA1743	-	methylenetetrahydrofolate cyclohydrolase
1708	 60.46	0	1903638..1904603	-	321	50843204	-	PPA1744	-	hypothetical protein
1709	 62.87	0	1904704..1907259	+	851	50843205	-	PPA1745	-	hypothetical protein
1710	 64.59	+1	1907271..1907897	+	208	50843206	-	PPA1746	-	hypothetical protein
1711	 64.15	+1	1907975..1909525	-	516	50843207	purH	PPA1747	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
1712	 61.38	0	1909522..1910145	-	207	50843208	purN	PPA1748	-	phosphoribosylglycinamide formyltransferase
1713	 62.28	0	1910170..1910670	-	166	50843209	ribH	PPA1749	-	riboflavin synthase subunit beta
1714	 64.62	+1	1910667..1911983	-	438	50843210	-	PPA1750	-	riboflavin biosynthesis protein RibA
1715	 61.67	0	1911977..1912576	-	199	50843211	-	PPA1751	-	riboflavin synthase subunit alpha
1716	 66.37	+1	1912584..1913579	-	331	50843212	-	PPA1752	-	riboflavin biosynthesis protein RibD
1717	 61.85	0	1913865..1915358	-	497	50843213	-	PPA1753	-	hypothetical protein
1718	 62.64	0	1915508..1916401	-	297	50843214	-	PPA1754	-	succinyl-CoA synthetase subunit alpha
1719	 62.24	0	1916405..1917580	-	391	50843215	sucC	PPA1755	-	succinyl-CoA synthetase subunit beta
1720	 55.73	-1	1917807..1920239	-	810	50843216	-	PPA1756	-	ATP-dependent DNA helicase
1721	 61.22	0	1920236..1920547	-	103	50843217	-	PPA1757	-	hypothetical protein
1722	 57.11	0	1920676..1921638	+	320	50843218	-	PPA1758	-	outer membrane lipoprotein
1723	 59.47	0	1921670..1922767	+	365	50843219	-	PPA1759	-	ABC transporter ATP-binding protein
1724	 59.48	0	1922767..1923420	+	217	50843220	-	PPA1760	-	ABC transporter associated permease
1725	 58.79	0	1923523..1924791	+	422	50843221	-	PPA1761	-	cardiolipin synthetase
1726	 57.20	0	1924939..1925202	+	87	50843222	-	PPA1762	-	hypothetical protein
1727	 61.75	0	1925432..1925716	+	94	50843223	-	PPA1763	-	hypothetical protein
1728	 60.95	0	1925968..1927560	-	530	50843224	guaA	PPA1764	-	bifunctional GMP synthase/glutamine amidotransferase protein
1729	 63.35	+1	1927718..1928290	+	190	50843225	-	PPA1765	-	serine acetyltransferase
1730	 61.78	0	1928299..1928646	-	115	50843226	-	PPA1766	-	chorismate mutase
1731	 63.32	+1	1928704..1929807	-	367	50843227	-	PPA1767	-	inositol-5-monophosphate dehydrogenase
1732	 59.93	0	1929841..1931355	-	504	50843228	-	PPA1768	-	IMP dehydrogenase / GMP reductase
1733	 61.33	0	1931453..1932895	-	480	50843229	-	PPA1769	-	hypothetical protein
1734	 58.97	0	1933262..1935016	+	584	50843230	-	PPA1770	-	sodium:alanine symporter family protein
60.05	MEAN

3.20	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.