IslandPathversion 1.0

IslandPath Analysis: Propionibacterium acnes KPA171202



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.05 STD DEV: 3.20
Propionibacterium acnes KPA171202, complete genome - 1..2560265
2297 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1603	 60.76	0	1773060..1773905	-	281	50843099	-	PPA1631	-	thioesterase family protein
1604	 57.49	0	1773902..1775809	-	635	50843100	-	PPA1632	-	putative long-chain fatty-acid CoA ligase (AMP-binding enzyme)
1605	 61.08	0	1775955..1776491	+	178	50843101	-	PPA1633	-	MarR family transcriptional regulator
1606	 63.15	0	1776496..1779369	+	957	50843102	-	PPA1634	-	FAD-linked oxidoreductase/iron-sulfur cluster-binding protein
1607	 62.87	0	1779451..1779792	+	113	50843103	-	PPA1635	-	PadR family transcriptional regulator
1608	 60.02	0	1780290..1781975	-	561	50843104	-	PPA1636	-	putative ABC transporter ATP-binding protein
1609	 60.17	0	1782097..1782558	-	153	50843105	-	PPA1637	-	single-strand binding protein
1610	 60.71	0	1782677..1784287	-	536	50843106	-	PPA1638	-	putative ABC transporter
1611	 60.88	0	1784284..1786149	-	621	50843107	-	PPA1639	-	putative ABC transporter
1612	 59.42	0	1786172..1787482	-	436	50843108	-	PPA1640	-	hypothetical protein
1613	 61.14	0	1787737..1788948	+	403	50843109	-	PPA1641	-	hypothetical protein
1614	 60.92	0	1789012..1789620	+	202	50843110	-	PPA1642	-	oligoribonuclease
1615	 57.91	0	1790038..1791465	+	475	50843111	-	PPA1643	-	D-serine/D-alanine/glycine transporter
1616	 59.27	0	1791526..1792959	+	477	50843112	-	PPA1644	-	serine/threonine protein kinase
1617	 57.14	0	1793012..1794250	+	412	50843113	-	PPA1645	-	putative beta-hexosaminidase
1618	 56.49	-1	1794265..1796091	+	608	50843114	-	PPA2356	-	hypothetical protein
1619	 58.56	0	1802023..1802244	-	73	50843115	-	PPA1649	-	hypothetical protein
1620	 58.71	0	1802289..1805693	-	1134	50843116	dnaE2	PPA1650	-	error-prone DNA polymerase
1621	 61.27	0	1805699..1807291	-	530	50843117	-	PPA1651	-	nucleotidyltransferase/DNA polymerase involved in DNA repair (UmuC)
1622	 61.47	0	1807281..1807877	-	198	50843118	-	PPA1652	-	hypothetical protein
1623	 60.30	0	1808045..1809364	+	439	50843119	-	PPA1653	-	putative UDP-N-acetylmuramyl tripeptide synthase (Mur ligase)
1624	 61.04	0	1809361..1810089	+	242	50843120	-	PPA1654	-	putative cobyric acid synthase CobQ
1625	 56.70	-1	1812034..1813056	+	340	50843121	-	PPA1657	-	binding-protein-dependent transport system inner membrane component
1626	 58.49	0	1813053..1813859	+	268	50843122	-	PPA1658	-	binding-protein-dependent transport system inner membrane component
1627	 59.26	0	1813933..1814499	-	188	50843123	-	PPA1660	-	hypothetical protein
1628	 57.22	0	1814529..1815068	+	179	50843124	-	PPA1661	-	putative peroxiredoxin (AhpC/TSA family protein)
1629	 57.34	0	1815622..1816500	+	292	50843125	-	PPA1662	-	lysozyme M1 precursor
1630	 49.21	-2	1817359..1817925	-	188	50843126	-	PPA1663	-	protein associated to putative adhesion protein
1631	 61.71	0	1817922..1818365	-	147	50843127	-	PPA1664	-	hypothetical protein
1632	 59.02	0	1818443..1819894	-	483	50843128	-	PPA1665	-	hypothetical protein
1633	 60.26	0	1819917..1820462	-	181	50843129	-	PPA1666	-	hypothetical protein
1634	 62.40	0	1820561..1820818	+	85	50843130	-	PPA1667	-	hypothetical protein
1635	 55.44	-1	1820967..1821857	-	296	50843131	-	PPA1668	-	RpiR family transcriptional regulator
1636	 57.47	0	1822215..1824128	+	637	50843132	-	PPA1669	-	membrane-spanning protein
1637	 61.02	0	1824180..1825577	-	465	50843133	-	PPA1670	-	DNA polymerase IV
1638	 59.45	0	1825574..1826044	-	156	50843134	-	PPA1671	-	dihydrofolate reductase
1639	 59.14	0	1826088..1826897	-	269	50843135	thyA	PPA1672	-	thymidylate synthase
1640	 60.49	0	1826898..1827512	-	204	50843136	-	PPA1673	-	putative nucleoside-triphosphatase
1641	 60.65	0	1827509..1828273	-	254	50843137	rph	PPA1674	-	ribonuclease PH
1642	 58.17	0	1828307..1829200	-	297	50843138	-	PPA1675	-	glutamate racemase
1643	 63.64	+1	1829333..1829662	+	109	50843139	-	PPA1676	-	ferrous iron transport protein A
1644	 62.44	0	1829723..1831687	+	654	50843140	-	PPA1677	-	ferrous iron transport protein B
1645	 64.65	+1	1831684..1832229	+	181	50843141	-	PPA1678	-	hypothetical protein
1646	 58.29	0	1832481..1833077	-	198	50843142	-	PPA1680	-	hypothetical protein
1647	 63.31	+1	1833164..1834504	+	446	50843143	-	PPA1681	-	nicotinate phosphoribosyltransferase
1648	 61.59	0	1834697..1834972	+	91	50843144	-	PPA1682	-	DNA-binding protein HU
1649	 61.12	0	1835077..1837185	-	702	50843145	-	PPA1683	-	4-alpha-glucanotransferase (amylomaltase)
1650	 61.19	0	1837276..1838097	-	273	50843146	-	PPA1684	-	hypothetical protein
1651	 60.27	0	1838405..1838701	+	98	50843147	-	PPA1685	-	hypothetical protein
1652	 58.33	0	1838726..1839157	-	143	50843148	-	PPA1686	-	3-dehydroquinate dehydratase
1653	 57.85	0	1839154..1840185	-	343	50843149	-	PPA1687	-	cation transport protein
1654	 64.02	+1	1840182..1841201	-	339	50843150	-	PPA1688	-	hypothetical protein
1655	 60.93	0	1841198..1841476	-	92	50843151	-	PPA1689	-	hypothetical protein
1656	 64.94	+1	1841486..1841947	-	153	50843152	-	PPA1690	-	hypothetical protein
1657	 62.14	0	1841927..1842412	+	161	50843153	-	PPA1691	-	hypothetical protein
1658	 61.21	0	1842418..1843920	-	500	50843154	-	PPA1692	-	hypothetical protein
1659	 63.06	0	1843917..1847246	-	1109	50843155	-	PPA1693	-	putative glycosyl transferase
1660	 59.30	0	1847395..1847652	-	85	50843156	-	PPA1694	-	transcription factor WhiB
1661	 61.06	0	1847829..1848524	-	231	50843157	-	PPA1695	-	hypothetical protein
1662	 59.15	0	1848521..1849597	-	358	50843158	-	PPA1696	-	mannose-1-phosphate guanylyltransferase
1663	 61.07	0	1849665..1850396	+	243	50843159	-	PPA1697	-	hypothetical protein
1664	 60.02	0	1850399..1851421	-	340	50843160	-	PPA1698	-	succinoglycan biosynthesis protein ExoA
1665	 62.15	0	1851527..1852810	+	427	50843161	-	PPA1699	-	cell envelope-related transcriptional attenuator
1666	 61.46	0	1853030..1855987	+	985	50843162	-	PPA1700	-	beta-galactosidase
1667	 63.62	+1	1856048..1856638	-	196	50843163	-	PPA1701	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
1668	 61.47	0	1856631..1857803	-	390	50843164	-	PPA1702	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
1669	 58.57	0	1857910..1858440	+	176	50843165	-	PPA1703	-	hypothetical protein
1670	 62.07	0	1858427..1859101	-	224	50843166	-	PPA1704	-	peptidase S51 family protein
1671	 59.64	0	1859191..1860030	-	279	50843167	-	PPA1705	-	putative BirA bifunctional protein
1672	 62.10	0	1860162..1860533	+	123	50843168	-	PPA1706	-	hypothetical protein
1673	 60.44	0	1860626..1862200	+	524	50843169	-	PPA1707	-	propionyl-CoA carboxylase beta chain
1674	 60.65	0	1862212..1862427	+	71	50843170	-	PPA1708	-	hypothetical protein
1675	 62.01	0	1862405..1863070	+	221	50843171	-	PPA1709	-	Maf-like protein
1676	 60.48	0	1863645..1864064	-	139	50843172	-	PPA1710	-	hypothetical protein
1677	 63.27	+1	1864261..1864995	+	244	50843173	-	PPA1711	-	short chain dehydrogenase
1678	 60.82	0	1865099..1866004	-	301	50843174	-	PPA1712	-	phosphomethylpyrimidine kinase
1679	 57.24	0	1868063..1869463	+	466	50843175	-	PPA1715	-	hypothetical protein
1680	 56.46	-1	1869663..1870661	-	332	50843176	-	PPA1716	-	putative magnesium transport protein
1681	 61.94	0	1870658..1871059	-	133	50843177	-	PPA1717	-	hypothetical protein
1682	 55.81	-1	1871132..1871389	+	85	50843178	-	PPA1718	-	hypothetical protein
1683	 62.20	0	1871425..1873194	+	589	50843179	-	PPA1719	-	putative biotin-dependent acetyl/propionyl-CoA (acyl-CoA) carboxylase
1684	 61.72	0	1873290..1873976	+	228	50843180	-	PPA1720	-	hypothetical protein
1685	 61.38	0	1874015..1875394	-	459	50843181	-	PPA1721	-	flavoprotein disulfide reductase
1686	 63.22	0	1875582..1876394	+	270	50843182	-	PPA1722	-	purine nucleoside phosphorylase
1687	 62.73	0	1876421..1878097	+	558	50843183	-	PPA1723	-	phosphoglucomutase/phosphomannomutase
1688	 62.54	0	1878129..1879802	-	557	50843184	-	PPA1724	-	putative fatty acid--CoA ligase (AMP-binding enzyme)
1689	 61.16	0	1879989..1880642	+	217	50843185	-	PPA1725	-	putative uridine kinase
1690	 63.52	+1	1880724..1882376	+	550	50843186	-	PPA1726	-	major facilitator superfamily permease
1691	 61.18	0	1882586..1883296	+	236	50843187	-	PPA1727	-	putative DNA polymerase III epsilon subunit (exonuclease)
1692	 58.35	0	1883298..1885076	-	592	161621793	-	PPA1728	-	methionyl-tRNA synthetase
1693	 63.57	+1	1885186..1886088	-	300	50843189	-	PPA1729	-	ribonuclease H
1694	 61.00	0	1886085..1886525	-	146	50843190	-	PPA1730	-	cytidine deaminase
1695	 58.57	0	1886500..1887858	-	452	50843191	-	PPA1731	-	ABC transporter associated permease
1696	 59.83	0	1887855..1889126	-	423	50843192	-	PPA1732	-	ABC transporter associated permease
1697	 59.75	0	1889123..1890712	-	529	50843193	-	PPA1733	-	ABC transporter ATP-binding protein
1698	 57.46	0	1890848..1892107	-	419	50843194	-	PPA1734	-	basic membrane lipoprotein
1699	 61.35	0	1892174..1893415	-	413	50843195	-	PPA1735	-	hypothetical protein
1700	 58.42	0	1893412..1894818	-	468	50843196	-	PPA1736	-	hypothetical protein
1701	 60.57	0	1894946..1896094	-	382	50843197	-	PPA1737	-	hypothetical protein
1702	 59.91	0	1896091..1898295	-	734	50843198	-	PPA1738	-	isocitrate dehydrogenase [NADP]
60.05	MEAN

3.20	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.