IslandPath Analysis: Propionibacterium acnes KPA171202



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 60.05   STD DEV: 3.20
Propionibacterium acnes KPA171202, complete genome - 1..2560265
2297 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
116	 55.56	-1	145752..145958	+	68	50841612	-	PPA0121	-	hypothetical protein
117	 65.57	+1	146394..147767	-	457	50841613	-	PPA0122	-	M16 family peptidase
118	 63.79	+1	149143..149664	+	173	50841614	-	PPA0125	-	hypothetical protein
119	 59.80	0	149657..152002	+	781	50841615	-	PPA0126	-	putative penicillin-binding protein
120	 61.69	0	152012..153559	+	515	50841616	-	PPA0127	-	membrane spanning protein
121	 61.31	0	153556..154731	+	391	50841617	-	PPA0128	-	membrane spanning protein
122	 62.33	0	154728..156065	+	445	50841618	-	PPA0129	-	hypothetical protein
123	 61.44	0	156026..157288	-	420	50841619	-	PPA0130	-	putative glycosyl transferase
124	 61.97	0	157556..158683	+	375	50841620	-	PPA0131	-	putative glycosyl transferase
125	 60.70	0	158680..160002	+	440	50841621	-	PPA0132	-	hypothetical protein
126	 64.22	+1	159976..160752	-	258	50841622	-	PPA0133	-	hypothetical protein
127	 62.78	0	160926..161543	+	205	50841623	-	PPA0134	-	putative acetyltransferase
128	 62.08	0	161627..162739	+	370	50841624	-	PPA0135	-	aspartate aminotransferase
129	 62.94	0	162739..163731	+	330	50841625	-	PPA0136	-	NAD-dependent dehydrogenase
130	 58.28	0	163833..165215	+	460	50841626	-	PPA0137	-	hypothetical protein
131	 59.32	0	165419..166996	+	525	50841627	-	PPA0138	-	dipeptide/tripeptide permease
132	 62.39	0	167045..168424	+	459	50841628	-	PPA0139	-	reductase, ferredoxin
133	 61.55	0	168440..169240	+	266	50841629	-	PPA0140	-	putative ketoacyl reductase
134	 62.79	0	169304..169561	-	85	50841630	-	PPA0141	-	hypothetical protein
135	 63.93	+1	169597..171609	-	670	50841631	-	PPA0142	-	phosphotransferase system
136	 65.72	+1	171619..172569	-	316	50841632	-	PPA0143	-	putative phosphofructokinase
137	 60.37	0	172897..173658	-	253	50841633	-	PPA0144	-	DeoR family transcriptional regulator
138	 61.82	0	173823..175121	+	432	50841634	-	PPA0145	-	putative UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase
139	 61.75	0	175105..176364	+	419	50841635	-	PPA0146	-	hypothetical protein
140	 59.23	0	176483..177598	+	371	50841636	-	PPA0147	-	putative glycosyl transferase
141	 64.25	+1	177696..178769	+	357	50841637	-	PPA0148	-	putative UDP-N-acetylglucosamine 2-epimerase
142	 62.75	0	178769..179890	+	373	50841638	-	PPA0149	-	putative glycosyl transferase group 1
143	 58.87	0	180035..181060	+	341	50841639	-	PPA0150	-	hypothetical protein
144	 59.60	0	181406..181702	-	98	50841640	-	PPA0151	-	hypothetical protein
145	 61.82	0	181699..183081	-	460	50841641	-	PPA0152	-	putative NADH dehydrogenase
146	 61.42	0	183208..183855	+	215	50841642	-	PPA0154	-	MutT/Nudix family protein
147	 65.16	+1	183837..186353	+	838	50841643	-	PPA0155	-	ATP-dependent helicase
148	 59.68	0	186661..187290	+	209	50841644	-	PPA0156	-	putative ABC-type transporter, permease component
149	 63.57	+1	187287..189386	+	699	50841645	-	PPA0157	-	ABC transporter
150	 62.16	0	189399..190574	-	391	50841646	-	PPA0158	-	putative glycosyl transferase
151	 62.62	0	190665..191084	-	139	50841647	-	PPA0159	-	hypothetical protein
152	 59.65	0	191062..191460	+	132	50841648	-	PPA0160	-	hypothetical protein
153	 61.81	0	191680..192687	-	335	50841649	-	PPA0161	-	dihydroorotate dehydrogenase 2
154	 62.77	0	192711..196325	-	1204	50841650	-	PPA0162	-	pyruvate-flavodoxin oxidoreductase
155	 63.26	+1	196341..198128	-	595	50841651	-	PPA0163	-	putative glutamate synthase (NADPH) small subunit
156	 58.40	0	198350..198724	+	124	50841652	-	PPA0164	-	hypothetical protein
157	 59.85	0	198746..199567	-	273	50841653	-	PPA0165	-	regulator protein
158	 61.57	0	199902..201590	+	562	50841654	-	PPA0166	-	putative L-lactate permease
159	 60.38	0	201645..202439	+	264	50841655	-	PPA0167	-	hypothetical protein
160	 60.94	0	202443..203978	+	511	50841656	-	PPA0168	-	putative iron-sulfur protein
161	 61.53	0	203975..204655	+	226	50841657	-	PPA0169	-	hypothetical protein
162	 61.54	0	204847..205509	+	220	50841658	-	PPA0170	-	putative ABC transporter
163	 62.11	0	205506..206735	+	409	50841659	-	PPA0171	-	hypothetical protein
164	 62.79	0	206732..207325	+	197	50841660	-	PPA0172	-	hypothetical protein
165	 65.30	+1	207350..208954	-	534	50841661	-	PPA0173	-	transport ATP-binding protein, CydCD
166	 65.27	+1	208951..210591	-	546	50841662	-	PPA0174	-	transport ATP-binding protein, CydCD
167	 62.29	0	210595..211668	-	357	50841663	-	PPA0175	-	cytochrome d ubiquinol oxidase, subunit II
168	 60.16	0	211681..213201	-	506	50841664	-	PPA0176	-	cytochrome d ubiquinol oxidase subunit I
169	 59.27	0	213336..214889	-	517	50841665	-	PPA0177	-	putative aminoacid permease
170	 58.67	0	215000..217000	-	666	50841666	-	PPA0178	-	putative ABC transporter
171	 59.47	0	216997..218733	-	578	50841667	-	PPA0179	-	ABC-type transporter
172	 56.58	-1	219005..220114	+	369	50841668	-	PPA0180	-	hypothetical protein
173	 56.76	-1	220111..220665	+	184	50841669	-	PPA2393	-	hypothetical protein
174	 61.58	0	220963..222495	+	510	50841670	lysS	PPA0181	-	lysyl-tRNA synthetase
175	 57.80	0	222534..222815	-	93	50841671	-	PPA0182	-	putative septation inhibitor protein
176	 61.13	0	222937..223767	+	276	50841672	-	PPA0183	-	membrane spanning protein DUF881
177	 61.51	0	223855..225753	-	632	50841673	-	PPA0184	-	putative serine/threonine protein kinase
178	 59.10	0	225800..227227	-	475	50841674	-	PPA0185	-	putative penicillin-binding protein
179	 59.34	0	227224..228615	-	463	50841675	-	PPA0186	-	putative cell division protein
180	 60.15	0	228612..230099	-	495	50841676	-	PPA0187	-	putative protein phosphatase
181	 59.51	0	230103..230591	-	162	50841677	-	PPA0188	-	hypothetical protein
182	 61.01	0	230594..231283	-	229	50841678	-	PPA0189	-	hypothetical protein
183	 65.52	+1	231455..232498	-	347	50841679	-	PPA0190	-	hypothetical protein
184	 62.31	0	232572..233534	-	320	50841680	-	PPA0191	-	hypothetical protein
185	 55.70	-1	234127..234828	-	233	50841681	-	PPA0192	-	hypothetical protein
186	 58.33	0	234838..235749	-	303	50841682	-	PPA0193	-	hypothetical protein
187	 63.90	+1	235924..236754	-	276	50841683	-	PPA0194	-	putative RHS related protein
188	 64.22	+1	236696..237961	-	421	50841684	-	PPA0195	-	putative RHS-family protein
189	 63.09	0	237966..239921	-	651	50841685	-	PPA0196	-	RHS-family protein
190	 57.61	0	240186..241112	+	308	50841686	-	PPA0197	-	hypothetical protein
191	 53.70	-1	241522..242385	+	287	50841687	-	PPA0198	-	hypothetical protein
192	 45.19	-2	243319..243765	-	148	50841688	-	PPA2367	-	hypothetical protein
193	 52.36	-2	243747..244361	-	204	50841689	-	PPA2368	-	hypothetical protein
194	 44.74	-2	244591..245037	-	148	50841690	-	PPA2394	-	hypothetical protein
195	 60.06	0	245019..247880	-	953	50841691	-	PPA0199	-	RHS-family protein
196	 60.22	0	247886..250678	-	930	50841692	-	PPA0200	-	RHS-family protein
197	 53.94	-1	250798..251520	-	240	50841693	-	PPA0201	-	hypothetical protein
198	 63.11	0	251890..252255	-	121	50841694	-	PPA0202	-	putative heat shock protein
199	 59.79	0	252517..252894	+	125	50841695	-	PPA0203	-	hypothetical protein
200	 63.34	+1	253133..255835	+	900	161621801	-	PPA0204	-	DNA polymerase III subunits gamma and tau
201	 63.58	+1	255945..256268	+	107	50841697	-	PPA0205	-	hypothetical protein
202	 59.24	0	256299..256904	+	201	50841698	-	PPA0206	-	putative recombination protein RecR
203	 59.03	0	257012..257587	+	191	50841699	-	PPA0207	-	transcriptional regulator
204	 63.98	+1	257593..258375	+	260	50841700	-	PPA0208	-	ABC transporter ATP-binding protein
205	 61.67	0	258375..261014	+	879	50841701	-	PPA0209	-	putative permease
206	 63.45	+1	261018..262853	-	611	50841702	-	PPA0210	-	membrane spanning protein
207	 61.92	0	262964..263764	+	266	50841703	-	PPA0211	-	putative hydrolase
208	 62.96	0	263774..264583	+	269	50841704	-	PPA0212	-	putative hydrolase
209	 55.67	-1	264701..265600	+	299	50841705	-	PPA0213	-	putative ABC transporter
210	 53.90	-1	265597..266802	+	401	50841706	-	PPA0214	-	hypothetical protein
211	 57.70	0	266814..267404	+	196	50841707	-	PPA0215	-	hypothetical protein
212	 61.61	0	268050..271394	+	1114	50841708	ileS	PPA0216	-	isoleucyl-tRNA synthetase
213	 63.93	+1	271509..272459	-	316	50841709	-	PPA0217	-	membrane associated protein
214	 62.99	0	272440..272847	-	135	50841710	-	PPA2396	-	hypothetical protein
215	 50.56	-2	272911..274326	-	471	50841711	-	PPA0218	-	putative transport protein
60.05	MEAN

3.20	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.