IslandPathversion 1.0

IslandPath Analysis: Propionibacterium acnes KPA171202



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.05 STD DEV: 3.20
Propionibacterium acnes KPA171202, complete genome - 1..2560265
2297 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1544	 61.21	0	1686138..1686632	+	164	50843040	-	PPA1566	-	hypothetical protein
1545	 58.02	0	1686718..1687515	+	265	50843041	-	PPA1567	-	hypothetical protein
1546	 61.92	0	1687656..1690268	+	870	50843042	valS	PPA1568	-	valyl-tRNA synthetase
1547	 61.35	0	1690506..1694471	+	1321	50843043	-	PPA1569	-	hypothetical protein
1548	 62.20	0	1694589..1697924	-	1111	50843044	-	PPA1570	-	tricorn protease
1549	 58.45	0	1697985..1699274	-	429	50843045	clpX	PPA1571	-	ATP-dependent protease ATP-binding subunit
1550	 59.19	0	1699463..1700224	-	253	50843046	-	PPA1572	-	ATP-dependent Clp protease proteolytic subunit 2
1551	 58.69	0	1700160..1700798	-	212	50843047	-	PPA1573	-	ATP-dependent Clp protease proteolytic subunit 1
1552	 56.76	-1	1700874..1702175	-	433	50843048	-	PPA1574	-	hypothetical protein
1553	 59.89	0	1702280..1703872	-	530	50843049	tig	PPA1575	-	trigger factor
1554	 57.92	0	1704361..1704909	+	182	50843050	-	PPA2360	-	hypothetical protein
1555	 62.36	0	1704973..1707849	+	958	50843051	-	PPA1577	-	putative helicase
1556	 64.34	+1	1707836..1708264	+	142	50843052	-	PPA1578	-	hypothetical protein
1557	 50.64	-2	1708330..1708953	+	207	50843053	-	PPA1579	-	S51 family peptidase
1558	 62.35	0	1710571..1710894	-	107	50843054	-	PPA1583	-	hypothetical protein
1559	 63.33	+1	1711024..1711293	-	89	50843055	-	PPA1584	-	hypothetical protein
1560	 63.67	+1	1711359..1712093	-	244	50843056	-	PPA1585	-	phage-associated protein
1561	 61.39	0	1712135..1713385	-	416	50843057	-	PPA1586	-	ParB family DNA methylase
1562	 66.08	+1	1713357..1714547	-	396	50843058	-	PPA1587	-	S-adenosylmethionine synthetase
1563	 64.92	+1	1714632..1715204	-	190	50843059	-	PPA1589	-	hypothetical protein
1564	 54.74	-1	1715266..1716078	+	270	50843060	-	PPA1590	-	hypothetical protein
1565	 52.54	-2	1716068..1718509	-	813	50843061	-	PPA1591	-	hypothetical protein
1566	 67.46	+2	1718901..1719278	-	125	50843062	-	PPA1592	-	phage associated protein
1567	 62.99	0	1719434..1719895	-	153	50843063	-	PPA1593	-	phage-associated protein
1568	 63.69	+1	1719886..1721262	-	458	50843064	-	PPA1594	-	phage-associated protein
1569	 62.37	0	1721243..1721521	-	92	50843065	-	PPA1595	-	hypothetical protein
1570	 63.30	+1	1721656..1723914	-	752	50843066	-	PPA1596	-	phage-associated protein
1571	 60.05	0	1723911..1724348	-	145	50843067	-	PPA1597	-	hypothetical protein
1572	 59.97	0	1724348..1725109	-	253	50843068	-	PPA1598	-	Bro family antirepressor
1573	 55.56	-1	1725426..1726343	+	305	50843069	-	PPA1599	-	phage-related protein
1574	 58.08	0	1728384..1728581	-	65	50843070	-	PPA1602	-	hypothetical protein
1575	 62.82	0	1728594..1729139	-	181	50843071	-	PPA1603	-	phage-associated protein
1576	 64.65	+1	1729145..1730287	-	380	50843072	-	PPA1604	-	phage-associated protein
1577	 69.62	+2	1730280..1730855	-	191	50843073	-	PPA1605	-	phage-associated protein
1578	 65.66	+1	1730957..1731550	-	197	50843074	-	PPA1606	-	phage-associated protein
1579	 60.68	0	1732056..1733057	+	333	50843075	-	PPA1607	-	phage-associated protein
1580	 60.63	0	1733057..1733503	+	148	50843076	-	PPA1608	-	phage-associated protein
1581	 58.13	0	1733500..1735374	+	624	50843077	-	PPA1609	-	phage-associated protein
1582	 58.65	0	1735364..1735600	+	78	50843078	-	PPA1610	-	putative transcriptional regulator
1583	 57.33	0	1735601..1737592	+	663	50843079	-	PPA1611	-	putative type III restriction-modification system
1584	 60.76	0	1737592..1740180	+	862	50843080	-	PPA1612	-	putative type III restriction enzyme
1585	 66.38	+1	1740164..1740862	-	232	50843081	-	PPA1613	-	hypothetical protein
1586	 66.31	+1	1741330..1744119	+	929	50843082	-	PPA1614	-	putative restriction enzyme
1587	 63.11	0	1744116..1750469	+	2117	50843083	-	PPA1615	-	DeaD/DeaH box helicase
1588	 63.65	+1	1750462..1752717	+	751	50843084	-	PPA1616	-	UvrD/Rep helicase
1589	 56.12	-1	1752871..1753515	-	214	50843085	-	PPA1617	-	hypothetical protein
1590	 53.42	-2	1753664..1754335	-	223	50843086	-	PPA1618	-	hypothetical protein
1591	 57.58	0	1754332..1754727	-	131	50843087	-	PPA2361	-	hypothetical protein
1592	 60.30	0	1755101..1756042	-	313	50843088	-	PPA1620	-	putative poly(3-hydroxyalkanoate) depolymerase
1593	 59.08	0	1756085..1759447	-	1120	50843089	lysS	PPA1621	-	lysyl-tRNA synthetase
1594	 60.88	0	1759598..1760944	-	448	50843090	-	PPA1622	-	hypothetical protein
1595	 59.33	0	1760969..1761868	-	299	50843091	-	PPA1623	-	formamidopyrimidine-DNA glycosylase
1596	 58.23	0	1762095..1762568	-	157	50843092	-	PPA1624	-	ribose-5-phosphate isomerase B
1597	 61.40	0	1762635..1763924	+	429	50843093	-	PPA1625	-	hypothetical protein
1598	 60.46	0	1764008..1766230	-	740	161621794	ligA	PPA1626	-	NAD-dependent DNA ligase LigA
1599	 60.46	0	1766766..1769360	+	864	50843095	-	PPA1627	-	aminopeptidase N
1600	 57.89	0	1769436..1769663	-	75	50843096	-	PPA1628	-	hypothetical protein
1601	 60.73	0	1769855..1771303	+	482	50843097	-	PPA1629	-	6-phosphogluconate dehydrogenase
1602	 61.23	0	1771379..1773052	+	557	50843098	-	PPA1630	-	alpha-glucosidase/amylase family protein
1603	 60.76	0	1773060..1773905	-	281	50843099	-	PPA1631	-	thioesterase family protein
1604	 57.49	0	1773902..1775809	-	635	50843100	-	PPA1632	-	putative long-chain fatty-acid CoA ligase (AMP-binding enzyme)
1605	 61.08	0	1775955..1776491	+	178	50843101	-	PPA1633	-	MarR family transcriptional regulator
1606	 63.15	0	1776496..1779369	+	957	50843102	-	PPA1634	-	FAD-linked oxidoreductase/iron-sulfur cluster-binding protein
1607	 62.87	0	1779451..1779792	+	113	50843103	-	PPA1635	-	PadR family transcriptional regulator
1608	 60.02	0	1780290..1781975	-	561	50843104	-	PPA1636	-	putative ABC transporter ATP-binding protein
1609	 60.17	0	1782097..1782558	-	153	50843105	-	PPA1637	-	single-strand binding protein
1610	 60.71	0	1782677..1784287	-	536	50843106	-	PPA1638	-	putative ABC transporter
1611	 60.88	0	1784284..1786149	-	621	50843107	-	PPA1639	-	putative ABC transporter
1612	 59.42	0	1786172..1787482	-	436	50843108	-	PPA1640	-	hypothetical protein
1613	 61.14	0	1787737..1788948	+	403	50843109	-	PPA1641	-	hypothetical protein
1614	 60.92	0	1789012..1789620	+	202	50843110	-	PPA1642	-	oligoribonuclease
1615	 57.91	0	1790038..1791465	+	475	50843111	-	PPA1643	-	D-serine/D-alanine/glycine transporter
1616	 59.27	0	1791526..1792959	+	477	50843112	-	PPA1644	-	serine/threonine protein kinase
1617	 57.14	0	1793012..1794250	+	412	50843113	-	PPA1645	-	putative beta-hexosaminidase
1618	 56.49	-1	1794265..1796091	+	608	50843114	-	PPA2356	-	hypothetical protein
1619	 58.56	0	1802023..1802244	-	73	50843115	-	PPA1649	-	hypothetical protein
1620	 58.71	0	1802289..1805693	-	1134	50843116	dnaE2	PPA1650	-	error-prone DNA polymerase
1621	 61.27	0	1805699..1807291	-	530	50843117	-	PPA1651	-	nucleotidyltransferase/DNA polymerase involved in DNA repair (UmuC)
1622	 61.47	0	1807281..1807877	-	198	50843118	-	PPA1652	-	hypothetical protein
1623	 60.30	0	1808045..1809364	+	439	50843119	-	PPA1653	-	putative UDP-N-acetylmuramyl tripeptide synthase (Mur ligase)
1624	 61.04	0	1809361..1810089	+	242	50843120	-	PPA1654	-	putative cobyric acid synthase CobQ
1625	 56.70	-1	1812034..1813056	+	340	50843121	-	PPA1657	-	binding-protein-dependent transport system inner membrane component
1626	 58.49	0	1813053..1813859	+	268	50843122	-	PPA1658	-	binding-protein-dependent transport system inner membrane component
1627	 59.26	0	1813933..1814499	-	188	50843123	-	PPA1660	-	hypothetical protein
1628	 57.22	0	1814529..1815068	+	179	50843124	-	PPA1661	-	putative peroxiredoxin (AhpC/TSA family protein)
1629	 57.34	0	1815622..1816500	+	292	50843125	-	PPA1662	-	lysozyme M1 precursor
1630	 49.21	-2	1817359..1817925	-	188	50843126	-	PPA1663	-	protein associated to putative adhesion protein
1631	 61.71	0	1817922..1818365	-	147	50843127	-	PPA1664	-	hypothetical protein
1632	 59.02	0	1818443..1819894	-	483	50843128	-	PPA1665	-	hypothetical protein
1633	 60.26	0	1819917..1820462	-	181	50843129	-	PPA1666	-	hypothetical protein
1634	 62.40	0	1820561..1820818	+	85	50843130	-	PPA1667	-	hypothetical protein
1635	 55.44	-1	1820967..1821857	-	296	50843131	-	PPA1668	-	RpiR family transcriptional regulator
1636	 57.47	0	1822215..1824128	+	637	50843132	-	PPA1669	-	membrane-spanning protein
1637	 61.02	0	1824180..1825577	-	465	50843133	-	PPA1670	-	DNA polymerase IV
1638	 59.45	0	1825574..1826044	-	156	50843134	-	PPA1671	-	dihydrofolate reductase
1639	 59.14	0	1826088..1826897	-	269	50843135	thyA	PPA1672	-	thymidylate synthase
1640	 60.49	0	1826898..1827512	-	204	50843136	-	PPA1673	-	putative nucleoside-triphosphatase
1641	 60.65	0	1827509..1828273	-	254	50843137	rph	PPA1674	-	ribonuclease PH
1642	 58.17	0	1828307..1829200	-	297	50843138	-	PPA1675	-	glutamate racemase
1643	 63.64	+1	1829333..1829662	+	109	50843139	-	PPA1676	-	ferrous iron transport protein A
60.05	MEAN

3.20	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.