IslandPathversion 1.0

IslandPath Analysis: Propionibacterium acnes KPA171202



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.05 STD DEV: 3.20
Propionibacterium acnes KPA171202, complete genome - 1..2560265
2297 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1500	 56.58	-1	1640771..1641325	-	184	50842996	-	PPA1518	-	ribosome recycling factor
1501	 58.68	0	1641358..1642071	-	237	50842997	pyrH	PPA1519	-	uridylate kinase
1502	 60.89	0	1642256..1643068	-	270	50842998	tsf	PPA1520	-	elongation factor Ts
1503	 60.56	0	1643103..1643954	-	283	50842999	rpsB	PPA1521	-	30S ribosomal protein S2
1504	 63.40	+1	1644242..1645189	+	315	50843000	xerC	PPA1522	-	site-specific tyrosine recombinase XerC
1505	 62.19	0	1645109..1645867	-	252	50843001	-	PPA1523	-	membrane spanning protein
1506	 62.42	0	1646015..1647097	+	360	50843002	-	PPA1524	-	hypothetical protein
1507	 62.19	0	1647164..1647766	+	200	50843003	-	PPA1525	-	polypeptide deformylase
1508	 62.96	0	1647773..1648582	-	269	50843004	-	PPA1526	-	rRNA methylase family protein
1509	 57.95	0	1648615..1649601	+	328	50843005	-	PPA1527	-	sodium/bile acid symporter family protein
1510	 61.92	0	1649799..1650767	-	322	50843006	-	PPA1528	-	hypothetical protein
1511	 58.55	0	1651047..1651514	-	155	50843007	-	PPA1529	-	hypothetical protein
1512	 60.18	0	1651541..1652326	-	261	50843008	-	PPA1530	-	ABC transporter ATP-binding protein
1513	 65.58	+1	1652440..1653174	+	244	50843009	-	PPA1531	-	hypothetical protein
1514	 60.59	0	1653180..1653953	-	257	50843010	-	PPA1532	-	enoyl-(acyl carrier protein) reductase
1515	 64.58	+1	1653994..1654713	-	239	50843011	-	PPA1533	-	3-oxoacyl-[acyl-carrier protein] reductase
1516	 61.16	0	1654792..1655136	+	114	50843012	-	PPA1534	-	hypothetical protein
1517	 59.85	0	1655239..1656045	+	268	50843013	-	PPA1535	-	membrane spanning protein
1518	 61.19	0	1656042..1656863	+	273	50843014	-	PPA1536	-	putative resistance protein
1519	 61.08	0	1656892..1657446	-	184	50843015	-	PPA1537	-	hypothetical protein
1520	 60.79	0	1657516..1659114	-	532	50843016	-	PPA1538	-	ABC transporter ATP binding protein
1521	 59.44	0	1659173..1659670	-	165	50843017	-	PPA1539	-	acetyltransferase family protein
1522	 56.80	-1	1659596..1660051	+	151	50843018	-	PPA1540	-	hypothetical protein
1523	 52.10	-2	1662579..1662935	-	118	50843019	-	PPA1543	-	hypothetical protein
1524	 54.53	-1	1662935..1663420	-	161	50843020	-	PPA1544	-	hypothetical protein
1525	 60.95	0	1663417..1664658	-	413	50843021	-	PPA1545	-	putative cysteine desulfurase
1526	 60.03	0	1664661..1665428	-	255	50843022	-	PPA1546	-	ABC transporter ATP-binding protein
1527	 60.19	0	1665435..1665758	-	107	50843023	-	PPA1547	-	putative dioxygenase ferredoxin subunit
1528	 62.20	0	1665758..1667032	-	424	50843024	-	PPA1548	-	hypothetical protein
1529	 59.28	0	1667019..1668467	-	482	50843025	-	PPA1549	-	hypothetical protein
1530	 61.31	0	1668464..1669228	-	254	50843026	-	PPA1550	-	ArsR family transcriptional regulator
1531	 58.77	0	1669544..1670809	+	421	50843027	-	PPA1552	-	putative periplasmic maltose-binding protein
1532	 56.45	-1	1670910..1672514	+	534	50843028	-	PPA1553	-	maltose transport system permease protein MalF
1533	 58.28	0	1672514..1673419	+	301	50843029	-	PPA1554	-	maltose transport system permease protein MalG
1534	 60.87	0	1673445..1674530	+	361	50843030	-	PPA1555	-	MalR repressor protein
1535	 58.05	0	1674674..1677157	+	827	50843031	hppA	PPA1556	-	membrane-bound proton-translocating pyrophosphatase
1536	 60.80	0	1677186..1677935	+	249	50843032	-	PPA1557	-	ABC transporter ATP-binding protein
1537	 61.05	0	1677937..1678701	+	254	50843033	-	PPA1558	-	putative ABC transporter-associated permease
1538	 60.32	0	1678515..1679585	+	356	50843034	-	PPA1559	-	hypothetical protein
1539	 61.10	0	1679681..1681189	-	502	50843035	-	PPA1560	-	sialidase precursor
1540	 56.76	-1	1681304..1682413	-	369	50843036	-	PPA1561	-	membrane protein, putative heme O synthase
1541	 58.29	0	1682542..1684116	+	524	50843037	-	PPA1563	-	glucose-6-phosphate 1-dehydrogenase
1542	 62.49	0	1684126..1685058	+	310	50843038	-	PPA1564	-	hypothetical protein
1543	 59.73	0	1685055..1685789	+	244	50843039	-	PPA1565	-	6-phosphogluconolactonase
1544	 61.21	0	1686138..1686632	+	164	50843040	-	PPA1566	-	hypothetical protein
1545	 58.02	0	1686718..1687515	+	265	50843041	-	PPA1567	-	hypothetical protein
1546	 61.92	0	1687656..1690268	+	870	50843042	valS	PPA1568	-	valyl-tRNA synthetase
1547	 61.35	0	1690506..1694471	+	1321	50843043	-	PPA1569	-	hypothetical protein
1548	 62.20	0	1694589..1697924	-	1111	50843044	-	PPA1570	-	tricorn protease
1549	 58.45	0	1697985..1699274	-	429	50843045	clpX	PPA1571	-	ATP-dependent protease ATP-binding subunit
1550	 59.19	0	1699463..1700224	-	253	50843046	-	PPA1572	-	ATP-dependent Clp protease proteolytic subunit 2
1551	 58.69	0	1700160..1700798	-	212	50843047	-	PPA1573	-	ATP-dependent Clp protease proteolytic subunit 1
1552	 56.76	-1	1700874..1702175	-	433	50843048	-	PPA1574	-	hypothetical protein
1553	 59.89	0	1702280..1703872	-	530	50843049	tig	PPA1575	-	trigger factor
1554	 57.92	0	1704361..1704909	+	182	50843050	-	PPA2360	-	hypothetical protein
1555	 62.36	0	1704973..1707849	+	958	50843051	-	PPA1577	-	putative helicase
1556	 64.34	+1	1707836..1708264	+	142	50843052	-	PPA1578	-	hypothetical protein
1557	 50.64	-2	1708330..1708953	+	207	50843053	-	PPA1579	-	S51 family peptidase
1558	 62.35	0	1710571..1710894	-	107	50843054	-	PPA1583	-	hypothetical protein
1559	 63.33	+1	1711024..1711293	-	89	50843055	-	PPA1584	-	hypothetical protein
1560	 63.67	+1	1711359..1712093	-	244	50843056	-	PPA1585	-	phage-associated protein
1561	 61.39	0	1712135..1713385	-	416	50843057	-	PPA1586	-	ParB family DNA methylase
1562	 66.08	+1	1713357..1714547	-	396	50843058	-	PPA1587	-	S-adenosylmethionine synthetase
1563	 64.92	+1	1714632..1715204	-	190	50843059	-	PPA1589	-	hypothetical protein
1564	 54.74	-1	1715266..1716078	+	270	50843060	-	PPA1590	-	hypothetical protein
1565	 52.54	-2	1716068..1718509	-	813	50843061	-	PPA1591	-	hypothetical protein
1566	 67.46	+2	1718901..1719278	-	125	50843062	-	PPA1592	-	phage associated protein
1567	 62.99	0	1719434..1719895	-	153	50843063	-	PPA1593	-	phage-associated protein
1568	 63.69	+1	1719886..1721262	-	458	50843064	-	PPA1594	-	phage-associated protein
1569	 62.37	0	1721243..1721521	-	92	50843065	-	PPA1595	-	hypothetical protein
1570	 63.30	+1	1721656..1723914	-	752	50843066	-	PPA1596	-	phage-associated protein
1571	 60.05	0	1723911..1724348	-	145	50843067	-	PPA1597	-	hypothetical protein
1572	 59.97	0	1724348..1725109	-	253	50843068	-	PPA1598	-	Bro family antirepressor
1573	 55.56	-1	1725426..1726343	+	305	50843069	-	PPA1599	-	phage-related protein
1574	 58.08	0	1728384..1728581	-	65	50843070	-	PPA1602	-	hypothetical protein
1575	 62.82	0	1728594..1729139	-	181	50843071	-	PPA1603	-	phage-associated protein
1576	 64.65	+1	1729145..1730287	-	380	50843072	-	PPA1604	-	phage-associated protein
1577	 69.62	+2	1730280..1730855	-	191	50843073	-	PPA1605	-	phage-associated protein
1578	 65.66	+1	1730957..1731550	-	197	50843074	-	PPA1606	-	phage-associated protein
1579	 60.68	0	1732056..1733057	+	333	50843075	-	PPA1607	-	phage-associated protein
1580	 60.63	0	1733057..1733503	+	148	50843076	-	PPA1608	-	phage-associated protein
1581	 58.13	0	1733500..1735374	+	624	50843077	-	PPA1609	-	phage-associated protein
1582	 58.65	0	1735364..1735600	+	78	50843078	-	PPA1610	-	putative transcriptional regulator
1583	 57.33	0	1735601..1737592	+	663	50843079	-	PPA1611	-	putative type III restriction-modification system
1584	 60.76	0	1737592..1740180	+	862	50843080	-	PPA1612	-	putative type III restriction enzyme
1585	 66.38	+1	1740164..1740862	-	232	50843081	-	PPA1613	-	hypothetical protein
1586	 66.31	+1	1741330..1744119	+	929	50843082	-	PPA1614	-	putative restriction enzyme
1587	 63.11	0	1744116..1750469	+	2117	50843083	-	PPA1615	-	DeaD/DeaH box helicase
1588	 63.65	+1	1750462..1752717	+	751	50843084	-	PPA1616	-	UvrD/Rep helicase
1589	 56.12	-1	1752871..1753515	-	214	50843085	-	PPA1617	-	hypothetical protein
1590	 53.42	-2	1753664..1754335	-	223	50843086	-	PPA1618	-	hypothetical protein
1591	 57.58	0	1754332..1754727	-	131	50843087	-	PPA2361	-	hypothetical protein
1592	 60.30	0	1755101..1756042	-	313	50843088	-	PPA1620	-	putative poly(3-hydroxyalkanoate) depolymerase
1593	 59.08	0	1756085..1759447	-	1120	50843089	lysS	PPA1621	-	lysyl-tRNA synthetase
1594	 60.88	0	1759598..1760944	-	448	50843090	-	PPA1622	-	hypothetical protein
1595	 59.33	0	1760969..1761868	-	299	50843091	-	PPA1623	-	formamidopyrimidine-DNA glycosylase
1596	 58.23	0	1762095..1762568	-	157	50843092	-	PPA1624	-	ribose-5-phosphate isomerase B
1597	 61.40	0	1762635..1763924	+	429	50843093	-	PPA1625	-	hypothetical protein
1598	 60.46	0	1764008..1766230	-	740	161621794	ligA	PPA1626	-	NAD-dependent DNA ligase LigA
1599	 60.46	0	1766766..1769360	+	864	50843095	-	PPA1627	-	aminopeptidase N
60.05	MEAN

3.20	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.