IslandPathversion 1.0

IslandPath Analysis: Propionibacterium acnes KPA171202



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.05 STD DEV: 3.20
Propionibacterium acnes KPA171202, complete genome - 1..2560265
2297 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1437	 57.29	0	1569457..1570992	+	511	50842933	-	PPA1454	-	solute-binding protein of transport system
1438	 59.25	0	1571072..1572028	+	318	50842934	-	PPA1455	-	transport system permease
1439	 59.53	0	1572025..1572921	+	298	50842935	-	PPA1456	-	transport system permease
1440	 59.05	0	1572942..1573952	-	336	50842936	-	PPA1457	-	LacI family transcriptional regulator
1441	 52.11	-2	1574043..1574255	-	70	50842937	-	PPA1458	-	hypothetical protein
1442	 60.96	0	1574904..1577987	+	1027	50842938	-	PPA1459	-	alpha-mannosidase
1443	 60.67	0	1577984..1579183	+	399	50842939	-	PPA1460	-	hypothetical protein
1444	 51.01	-2	1579263..1579460	+	65	50842940	-	PPA1461	-	putative short-chain dehydrogenase fragment
1445	 46.94	-2	1579437..1579730	-	97	50842941	-	PPA1462	-	hypothetical protein
1446	 55.49	-1	1579669..1580142	-	157	50842942	-	PPA1463	-	phosphopantetheine adenylyltransferase
1447	 60.26	0	1580139..1580747	-	202	50842943	-	PPA1464	-	putative methylase
1448	 59.81	0	1580884..1581306	+	140	50842944	-	PPA1465	-	hypothetical protein
1449	 61.11	0	1581410..1583659	-	749	50842945	-	PPA1466	-	ATP-dependent DNA helicase RecG
1450	 58.48	0	1584036..1585709	-	557	50842946	-	PPA1467	-	metal dependent hydrolase
1451	 59.20	0	1586166..1587905	-	579	50842947	-	PPA1468	-	pyruvate dehydrogenase
1452	 56.79	-1	1588013..1588852	-	279	50842948	-	PPA1469	-	hypothetical protein
1453	 59.65	0	1588845..1589585	-	246	50842949	-	PPA1470	-	dihydrodipicolinate reductase
1454	 61.13	0	1589752..1591953	-	733	50842950	-	PPA1471	-	polynucleotide phosphorylase/polyadenylase
1455	 53.03	-2	1592274..1592537	-	87	50842951	-	PPA1472	-	30S ribosomal protein S15
1456	 60.63	0	1592777..1593919	-	380	50842952	-	PPA1474	-	riboflavin biosynthesis protein RibF (riboflavin kinase)
1457	 55.69	-1	1593825..1594844	-	339	50842953	-	PPA1475	-	substrate binding component of glycine/betaine transport system
1458	 57.90	0	1594875..1595741	-	288	50842954	-	PPA1476	-	glycine betaine transport system permease protein
1459	 57.65	0	1595747..1597054	-	435	50842955	-	PPA1477	-	putative glycine betaine/proline ABC transporter
1460	 61.26	0	1597386..1598273	-	295	50842956	truB	PPA1478	-	tRNA pseudouridine synthase B
1461	 58.41	0	1598326..1598652	-	108	50842957	-	PPA1479	-	hypothetical protein
1462	 57.83	0	1598693..1598941	-	82	50842958	-	PPA1480	-	hypothetical protein
1463	 51.89	-2	1599376..1599639	-	87	50842959	-	PPA1481	-	hypothetical protein
1464	 61.83	0	1599757..1601679	+	640	50842960	-	PPA1482	-	putative regulator of sorbitol operon
1465	 61.54	0	1601676..1602182	+	168	50842961	-	PPA1483	-	sorbitol operon activator
1466	 59.24	0	1602266..1602844	+	192	50842962	-	PPA1484	-	PTS system enzyme II sorbitol-specific factor
1467	 61.62	0	1602846..1603895	+	349	50842963	-	PPA1485	-	PTS system, glucitol/sorbitol-specific IIBC component
1468	 62.60	0	1603923..1604291	+	122	50842964	-	PPA1486	-	PTS system, glucitol/sorbitol-specific IIA component
1469	 63.00	0	1604288..1604587	+	99	50842965	-	PPA1487	-	PTS HPr component
1470	 65.43	+1	1604590..1605963	+	457	50842966	-	PPA1488	-	arabinose operon protein AraM
1471	 62.27	0	1606027..1606458	-	143	50842967	rbfA	PPA1489	-	ribosome-binding factor A
1472	 65.36	+1	1606539..1607150	-	203	50842968	-	PPA1490	-	hypothetical protein
1473	 65.73	+1	1607147..1608319	-	390	50842969	-	PPA1491	-	hypothetical protein
1474	 62.58	0	1608316..1609098	-	260	50842970	-	PPA1492	-	ABC transporter, ATP-binding protein
1475	 63.21	0	1609785..1612679	-	964	50842971	infB	PPA1493	-	translation initiation factor IF-2
1476	 59.26	0	1613228..1614199	-	323	50842972	nusA	PPA1494	-	transcription elongation factor NusA
1477	 63.13	0	1614201..1614737	-	178	50842973	-	PPA1495	-	hypothetical protein
1478	 61.06	0	1614866..1615828	+	320	50842974	-	PPA1496	-	hypothetical protein
1479	 57.68	0	1615859..1616626	-	255	50842975	-	PPA1497	-	hypothetical protein
1480	 59.94	0	1616712..1618466	-	584	50842976	-	PPA1498	-	hypothetical protein
1481	 60.58	0	1618624..1620381	-	585	50842977	-	PPA1499	-	prolyl-tRNA synthetase
1482	 61.60	0	1620551..1623193	+	880	50842978	-	PPA1500	-	hypothetical protein
1483	 59.38	0	1623190..1624713	+	507	50842979	-	PPA1501	-	periplasmic solute binding protein
1484	 58.65	0	1624734..1625744	+	336	50842980	-	PPA1502	-	hypothetical protein
1485	 63.46	+1	1625813..1626499	+	228	50842981	-	PPA1503	-	ABC transporter ATP-binding protein
1486	 65.18	+1	1626512..1627450	+	312	50842982	-	PPA1504	-	ABC transporter ATP-binding protein
1487	 66.90	+2	1627444..1628289	-	281	50842983	-	PPA1505	-	acetyltransferase family protein
1488	 59.41	0	1628291..1629433	-	380	50842984	ispG	PPA1506	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
1489	 55.42	-1	1629620..1630339	-	239	50842985	-	PPA1507	-	putative transcriptional regulator
1490	 62.08	0	1630453..1630953	-	166	50842986	-	PPA1508	-	putative nuclease
1491	 59.25	0	1631256..1632536	-	426	50842987	-	PPA1509	-	membrane-spanning metalloprotease
1492	 61.52	0	1632533..1633756	-	407	50842988	-	PPA1510	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
1493	 61.91	0	1633766..1635217	+	483	50842989	-	PPA1511	-	putative 6-aminohexanoate-dimer hydrolase
1494	 64.38	+1	1635214..1636305	+	363	50842990	-	PPA1512	-	hypothetical protein
1495	 59.04	0	1636283..1637620	-	445	50842991	-	PPA1513	-	glutamate dehydrogenase
1496	 62.15	0	1637705..1638922	-	405	50842992	-	PPA1514	-	hypothetical protein
1497	 54.84	-1	1638995..1639645	-	216	50842993	-	PPA1515	-	hypothetical protein
1498	 50.62	-2	1639639..1639800	-	53	50842994	-	PPA1516	-	hypothetical protein
1499	 59.61	0	1639896..1640759	-	287	50842995	-	PPA1517	-	phosphatidate cytidylyltransferase
1500	 56.58	-1	1640771..1641325	-	184	50842996	-	PPA1518	-	ribosome recycling factor
1501	 58.68	0	1641358..1642071	-	237	50842997	pyrH	PPA1519	-	uridylate kinase
1502	 60.89	0	1642256..1643068	-	270	50842998	tsf	PPA1520	-	elongation factor Ts
1503	 60.56	0	1643103..1643954	-	283	50842999	rpsB	PPA1521	-	30S ribosomal protein S2
1504	 63.40	+1	1644242..1645189	+	315	50843000	xerC	PPA1522	-	site-specific tyrosine recombinase XerC
1505	 62.19	0	1645109..1645867	-	252	50843001	-	PPA1523	-	membrane spanning protein
1506	 62.42	0	1646015..1647097	+	360	50843002	-	PPA1524	-	hypothetical protein
1507	 62.19	0	1647164..1647766	+	200	50843003	-	PPA1525	-	polypeptide deformylase
1508	 62.96	0	1647773..1648582	-	269	50843004	-	PPA1526	-	rRNA methylase family protein
1509	 57.95	0	1648615..1649601	+	328	50843005	-	PPA1527	-	sodium/bile acid symporter family protein
1510	 61.92	0	1649799..1650767	-	322	50843006	-	PPA1528	-	hypothetical protein
1511	 58.55	0	1651047..1651514	-	155	50843007	-	PPA1529	-	hypothetical protein
1512	 60.18	0	1651541..1652326	-	261	50843008	-	PPA1530	-	ABC transporter ATP-binding protein
1513	 65.58	+1	1652440..1653174	+	244	50843009	-	PPA1531	-	hypothetical protein
1514	 60.59	0	1653180..1653953	-	257	50843010	-	PPA1532	-	enoyl-(acyl carrier protein) reductase
1515	 64.58	+1	1653994..1654713	-	239	50843011	-	PPA1533	-	3-oxoacyl-[acyl-carrier protein] reductase
1516	 61.16	0	1654792..1655136	+	114	50843012	-	PPA1534	-	hypothetical protein
1517	 59.85	0	1655239..1656045	+	268	50843013	-	PPA1535	-	membrane spanning protein
1518	 61.19	0	1656042..1656863	+	273	50843014	-	PPA1536	-	putative resistance protein
1519	 61.08	0	1656892..1657446	-	184	50843015	-	PPA1537	-	hypothetical protein
1520	 60.79	0	1657516..1659114	-	532	50843016	-	PPA1538	-	ABC transporter ATP binding protein
1521	 59.44	0	1659173..1659670	-	165	50843017	-	PPA1539	-	acetyltransferase family protein
1522	 56.80	-1	1659596..1660051	+	151	50843018	-	PPA1540	-	hypothetical protein
1523	 52.10	-2	1662579..1662935	-	118	50843019	-	PPA1543	-	hypothetical protein
1524	 54.53	-1	1662935..1663420	-	161	50843020	-	PPA1544	-	hypothetical protein
1525	 60.95	0	1663417..1664658	-	413	50843021	-	PPA1545	-	putative cysteine desulfurase
1526	 60.03	0	1664661..1665428	-	255	50843022	-	PPA1546	-	ABC transporter ATP-binding protein
1527	 60.19	0	1665435..1665758	-	107	50843023	-	PPA1547	-	putative dioxygenase ferredoxin subunit
1528	 62.20	0	1665758..1667032	-	424	50843024	-	PPA1548	-	hypothetical protein
1529	 59.28	0	1667019..1668467	-	482	50843025	-	PPA1549	-	hypothetical protein
1530	 61.31	0	1668464..1669228	-	254	50843026	-	PPA1550	-	ArsR family transcriptional regulator
1531	 58.77	0	1669544..1670809	+	421	50843027	-	PPA1552	-	putative periplasmic maltose-binding protein
1532	 56.45	-1	1670910..1672514	+	534	50843028	-	PPA1553	-	maltose transport system permease protein MalF
1533	 58.28	0	1672514..1673419	+	301	50843029	-	PPA1554	-	maltose transport system permease protein MalG
1534	 60.87	0	1673445..1674530	+	361	50843030	-	PPA1555	-	MalR repressor protein
1535	 58.05	0	1674674..1677157	+	827	50843031	hppA	PPA1556	-	membrane-bound proton-translocating pyrophosphatase
1536	 60.80	0	1677186..1677935	+	249	50843032	-	PPA1557	-	ABC transporter ATP-binding protein
60.05	MEAN

3.20	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.