IslandPathversion 1.0

IslandPath Analysis: Propionibacterium acnes KPA171202



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.05 STD DEV: 3.20
Propionibacterium acnes KPA171202, complete genome - 1..2560265
2297 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1411	 57.41	0	1546949..1547164	+	71	50842907	-	PPA1427	-	CsbD-like protein
1412	 58.71	0	1547186..1547713	+	175	50842908	-	PPA1428	-	methylated-DNA--protein-cysteine methyltransferase
1413	 61.29	0	1547688..1548821	-	377	50842909	-	PPA1429	-	DNA processing / uptake protein
1414	 63.07	0	1548818..1550290	-	490	50842910	-	PPA1430	-	competence related protein (magnesium chelatase, ATPase)
1415	 60.52	0	1550338..1550760	-	140	50842911	-	PPA1431	-	hypothetical protein
1416	 53.21	-2	1551025..1551336	-	103	50842912	-	PPA1432	-	hypothetical protein
1417	 59.84	0	1551333..1551947	-	204	50842913	rnhB	PPA1433	-	ribonuclease HII
1418	 58.91	0	1551983..1552807	-	274	50842914	-	PPA1434	-	signal peptidase I
1419	 61.58	0	1552978..1553331	-	117	50842915	rplS	PPA1435	-	50S ribosomal protein L19
1420	 60.72	0	1553582..1554355	-	257	50842916	-	PPA1437	-	succinate dehydrogenase/fumarate reductase iron-sulfur subunit
1421	 60.31	0	1554352..1556379	-	675	50842917	sdhA	PPA1438	-	succinate dehydrogenase flavoprotein subunit
1422	 55.92	-1	1556379..1557113	-	244	50842918	-	PPA1439	-	succinate dehydrogenase cytochrome B-558 subunit
1423	 60.14	0	1557240..1557959	-	239	50842919	-	PPA1440	-	tRNA (guanine-N(1)-)-methyltransferase
1424	 58.52	0	1557962..1558501	-	179	50842920	-	PPA1441	-	16S rRNA processing protein RimM
1425	 62.01	0	1558609..1558887	-	92	50842921	-	PPA1442	-	hypothetical protein
1426	 61.04	0	1558890..1559333	-	147	50842922	-	PPA1443	-	30S ribosomal protein S16
1427	 60.57	0	1559524..1560687	-	387	50842923	-	PPA1444	-	amidohydrolase family protein
1428	 59.23	0	1560764..1562350	-	528	50842924	-	PPA1445	-	signal recognition particle protein
1429	 57.02	0	1562426..1563607	-	393	50842925	-	PPA1446	-	membrane-associated protein
1430	 61.88	0	1563618..1564808	-	396	50842926	-	PPA1447	-	signal recognition particle receptor
1431	 51.52	-2	1565086..1565745	-	219	50842927	-	PPA1448	-	GtrA-like protein
1432	 62.28	0	1566351..1566692	+	113	50842928	-	PPA1449	-	HicB family protein
1433	 60.32	0	1566814..1567065	+	83	50842929	-	PPA1450	-	hypothetical protein
1434	 59.01	0	1567089..1567859	-	256	50842930	-	PPA1451	-	formamidopyrimidine-DNA glycosylase
1435	 59.24	0	1567852..1568592	-	246	161621795	rnc	PPA1452	-	ribonuclease III
1436	 62.21	0	1568858..1569418	-	186	50842932	-	PPA1453	-	metal-binding protein
1437	 57.29	0	1569457..1570992	+	511	50842933	-	PPA1454	-	solute-binding protein of transport system
1438	 59.25	0	1571072..1572028	+	318	50842934	-	PPA1455	-	transport system permease
1439	 59.53	0	1572025..1572921	+	298	50842935	-	PPA1456	-	transport system permease
1440	 59.05	0	1572942..1573952	-	336	50842936	-	PPA1457	-	LacI family transcriptional regulator
1441	 52.11	-2	1574043..1574255	-	70	50842937	-	PPA1458	-	hypothetical protein
1442	 60.96	0	1574904..1577987	+	1027	50842938	-	PPA1459	-	alpha-mannosidase
1443	 60.67	0	1577984..1579183	+	399	50842939	-	PPA1460	-	hypothetical protein
1444	 51.01	-2	1579263..1579460	+	65	50842940	-	PPA1461	-	putative short-chain dehydrogenase fragment
1445	 46.94	-2	1579437..1579730	-	97	50842941	-	PPA1462	-	hypothetical protein
1446	 55.49	-1	1579669..1580142	-	157	50842942	-	PPA1463	-	phosphopantetheine adenylyltransferase
1447	 60.26	0	1580139..1580747	-	202	50842943	-	PPA1464	-	putative methylase
1448	 59.81	0	1580884..1581306	+	140	50842944	-	PPA1465	-	hypothetical protein
1449	 61.11	0	1581410..1583659	-	749	50842945	-	PPA1466	-	ATP-dependent DNA helicase RecG
1450	 58.48	0	1584036..1585709	-	557	50842946	-	PPA1467	-	metal dependent hydrolase
1451	 59.20	0	1586166..1587905	-	579	50842947	-	PPA1468	-	pyruvate dehydrogenase
1452	 56.79	-1	1588013..1588852	-	279	50842948	-	PPA1469	-	hypothetical protein
1453	 59.65	0	1588845..1589585	-	246	50842949	-	PPA1470	-	dihydrodipicolinate reductase
1454	 61.13	0	1589752..1591953	-	733	50842950	-	PPA1471	-	polynucleotide phosphorylase/polyadenylase
1455	 53.03	-2	1592274..1592537	-	87	50842951	-	PPA1472	-	30S ribosomal protein S15
1456	 60.63	0	1592777..1593919	-	380	50842952	-	PPA1474	-	riboflavin biosynthesis protein RibF (riboflavin kinase)
1457	 55.69	-1	1593825..1594844	-	339	50842953	-	PPA1475	-	substrate binding component of glycine/betaine transport system
1458	 57.90	0	1594875..1595741	-	288	50842954	-	PPA1476	-	glycine betaine transport system permease protein
1459	 57.65	0	1595747..1597054	-	435	50842955	-	PPA1477	-	putative glycine betaine/proline ABC transporter
1460	 61.26	0	1597386..1598273	-	295	50842956	truB	PPA1478	-	tRNA pseudouridine synthase B
1461	 58.41	0	1598326..1598652	-	108	50842957	-	PPA1479	-	hypothetical protein
1462	 57.83	0	1598693..1598941	-	82	50842958	-	PPA1480	-	hypothetical protein
1463	 51.89	-2	1599376..1599639	-	87	50842959	-	PPA1481	-	hypothetical protein
1464	 61.83	0	1599757..1601679	+	640	50842960	-	PPA1482	-	putative regulator of sorbitol operon
1465	 61.54	0	1601676..1602182	+	168	50842961	-	PPA1483	-	sorbitol operon activator
1466	 59.24	0	1602266..1602844	+	192	50842962	-	PPA1484	-	PTS system enzyme II sorbitol-specific factor
1467	 61.62	0	1602846..1603895	+	349	50842963	-	PPA1485	-	PTS system, glucitol/sorbitol-specific IIBC component
1468	 62.60	0	1603923..1604291	+	122	50842964	-	PPA1486	-	PTS system, glucitol/sorbitol-specific IIA component
1469	 63.00	0	1604288..1604587	+	99	50842965	-	PPA1487	-	PTS HPr component
1470	 65.43	+1	1604590..1605963	+	457	50842966	-	PPA1488	-	arabinose operon protein AraM
1471	 62.27	0	1606027..1606458	-	143	50842967	rbfA	PPA1489	-	ribosome-binding factor A
1472	 65.36	+1	1606539..1607150	-	203	50842968	-	PPA1490	-	hypothetical protein
1473	 65.73	+1	1607147..1608319	-	390	50842969	-	PPA1491	-	hypothetical protein
1474	 62.58	0	1608316..1609098	-	260	50842970	-	PPA1492	-	ABC transporter, ATP-binding protein
1475	 63.21	0	1609785..1612679	-	964	50842971	infB	PPA1493	-	translation initiation factor IF-2
1476	 59.26	0	1613228..1614199	-	323	50842972	nusA	PPA1494	-	transcription elongation factor NusA
1477	 63.13	0	1614201..1614737	-	178	50842973	-	PPA1495	-	hypothetical protein
1478	 61.06	0	1614866..1615828	+	320	50842974	-	PPA1496	-	hypothetical protein
1479	 57.68	0	1615859..1616626	-	255	50842975	-	PPA1497	-	hypothetical protein
1480	 59.94	0	1616712..1618466	-	584	50842976	-	PPA1498	-	hypothetical protein
1481	 60.58	0	1618624..1620381	-	585	50842977	-	PPA1499	-	prolyl-tRNA synthetase
1482	 61.60	0	1620551..1623193	+	880	50842978	-	PPA1500	-	hypothetical protein
1483	 59.38	0	1623190..1624713	+	507	50842979	-	PPA1501	-	periplasmic solute binding protein
1484	 58.65	0	1624734..1625744	+	336	50842980	-	PPA1502	-	hypothetical protein
1485	 63.46	+1	1625813..1626499	+	228	50842981	-	PPA1503	-	ABC transporter ATP-binding protein
1486	 65.18	+1	1626512..1627450	+	312	50842982	-	PPA1504	-	ABC transporter ATP-binding protein
1487	 66.90	+2	1627444..1628289	-	281	50842983	-	PPA1505	-	acetyltransferase family protein
1488	 59.41	0	1628291..1629433	-	380	50842984	ispG	PPA1506	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
1489	 55.42	-1	1629620..1630339	-	239	50842985	-	PPA1507	-	putative transcriptional regulator
1490	 62.08	0	1630453..1630953	-	166	50842986	-	PPA1508	-	putative nuclease
1491	 59.25	0	1631256..1632536	-	426	50842987	-	PPA1509	-	membrane-spanning metalloprotease
1492	 61.52	0	1632533..1633756	-	407	50842988	-	PPA1510	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
1493	 61.91	0	1633766..1635217	+	483	50842989	-	PPA1511	-	putative 6-aminohexanoate-dimer hydrolase
1494	 64.38	+1	1635214..1636305	+	363	50842990	-	PPA1512	-	hypothetical protein
1495	 59.04	0	1636283..1637620	-	445	50842991	-	PPA1513	-	glutamate dehydrogenase
1496	 62.15	0	1637705..1638922	-	405	50842992	-	PPA1514	-	hypothetical protein
1497	 54.84	-1	1638995..1639645	-	216	50842993	-	PPA1515	-	hypothetical protein
1498	 50.62	-2	1639639..1639800	-	53	50842994	-	PPA1516	-	hypothetical protein
1499	 59.61	0	1639896..1640759	-	287	50842995	-	PPA1517	-	phosphatidate cytidylyltransferase
1500	 56.58	-1	1640771..1641325	-	184	50842996	-	PPA1518	-	ribosome recycling factor
1501	 58.68	0	1641358..1642071	-	237	50842997	pyrH	PPA1519	-	uridylate kinase
1502	 60.89	0	1642256..1643068	-	270	50842998	tsf	PPA1520	-	elongation factor Ts
1503	 60.56	0	1643103..1643954	-	283	50842999	rpsB	PPA1521	-	30S ribosomal protein S2
1504	 63.40	+1	1644242..1645189	+	315	50843000	xerC	PPA1522	-	site-specific tyrosine recombinase XerC
1505	 62.19	0	1645109..1645867	-	252	50843001	-	PPA1523	-	membrane spanning protein
1506	 62.42	0	1646015..1647097	+	360	50843002	-	PPA1524	-	hypothetical protein
1507	 62.19	0	1647164..1647766	+	200	50843003	-	PPA1525	-	polypeptide deformylase
1508	 62.96	0	1647773..1648582	-	269	50843004	-	PPA1526	-	rRNA methylase family protein
1509	 57.95	0	1648615..1649601	+	328	50843005	-	PPA1527	-	sodium/bile acid symporter family protein
1510	 61.92	0	1649799..1650767	-	322	50843006	-	PPA1528	-	hypothetical protein
60.05	MEAN

3.20	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.