IslandPath Analysis: Propionibacterium acnes KPA171202



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 60.05   STD DEV: 3.20
Propionibacterium acnes KPA171202, complete genome - 1..2560265
2297 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1373	 59.81	0	1506810..1507757	-	315	50842869	-	PPA1387	-	chromosome partitioning protein
1374	 61.35	0	1507819..1508739	-	306	50842870	xerD	PPA1388	-	site-specific tyrosine recombinase XerD
1375	 61.36	0	1508736..1509395	-	219	50842871	-	PPA1389	-	putative ADP-ribose pyrophosphatase
1376	 61.99	0	1509392..1511080	-	562	50842872	-	PPA1390	-	CTP synthetase
1377	 51.90	-2	1511253..1511462	-	69	50842873	-	PPA1391	-	hypothetical protein
1378	 54.11	-1	1511466..1511672	-	68	50842874	-	PPA1392	-	hypothetical protein
1379	 56.76	-1	1511609..1511830	-	73	50842875	-	PPA1393	-	hypothetical protein
1380	 62.08	0	1511846..1513525	-	559	50842876	-	PPA1394	-	DNA repair protein RecN
1381	 60.82	0	1513522..1514478	-	318	50842877	ppnK	PPA1395	-	inorganic polyphosphate/ATP-NAD kinase
1382	 58.56	0	1514497..1515273	-	258	50842878	-	PPA1396	-	putative cytotoxin/hemolysin
1383	 57.69	0	1515285..1515440	-	51	50842879	-	PPA1397	-	hypothetical protein
1384	 57.35	0	1515544..1516176	-	210	50842880	-	PPA1398	-	cobalt permease or related transporter
1385	 58.25	0	1516173..1517123	-	316	50842881	-	PPA1399	-	ABC-type transporter, ATPase component
1386	 58.77	0	1516922..1517491	-	189	50842882	-	PPA1400	-	BioY family protein
1387	 59.86	0	1517562..1518560	-	332	50842883	-	PPA1401	-	putative hydrolase
1388	 61.75	0	1518557..1519735	-	392	50842884	-	PPA1402	-	hypothetical protein
1389	 58.08	0	1525654..1525851	-	65	50842885	-	PPA1403	-	hypothetical protein
1390	 57.76	0	1525985..1527241	-	418	50842886	-	PPA1404	-	tyrosyl-tRNA synthetase
1391	 57.01	0	1527325..1527873	-	182	50842887	-	PPA1405	-	arginine repressor
1392	 57.84	0	1527969..1528580	-	203	50842888	-	PPA1406	-	tetracycline repressor protein
1393	 60.15	0	1528593..1529759	+	388	50842889	-	PPA1407	-	biotin synthase
1394	 60.91	0	1530001..1532520	-	839	50842890	-	PPA1408	-	phenylalanyl-tRNA synthetase beta chain
1395	 61.17	0	1532517..1533626	-	369	50842891	pheS	PPA1409	-	phenylalanyl-tRNA synthetase subunit alpha
1396	 60.34	0	1533749..1534570	-	273	50842892	-	PPA1410	-	putative rRNA methylase
1397	 59.41	0	1534572..1534943	-	123	50842893	rplT	PPA1412	-	50S ribosomal protein L20
1398	 62.32	0	1535047..1535253	-	68	50842894	rpmI	PPA1413	-	50S ribosomal protein L35
1399	 59.36	0	1535354..1536160	-	268	50842895	infC	PPA1414	-	translation initiation factor IF-3
1400	 61.18	0	1536349..1536822	-	157	50842896	-	PPA1415	-	hypothetical protein
1401	 60.84	0	1536889..1537506	+	205	50842897	-	PPA1416	-	hypothetical protein
1402	 56.61	-1	1537568..1538422	-	284	50842898	hisG	PPA1417	-	ATP phosphoribosyltransferase
1403	 54.31	-1	1538480..1538746	-	88	50842899	hisE	PPA1418	-	phosphoribosyl-ATP pyrophosphatase
1404	 58.44	0	1538813..1539493	-	226	50842900	-	PPA1419	-	nicotinamide mononucleotide transporter
1405	 60.38	0	1539553..1540347	-	264	50842901	-	PPA1420	-	hypothetical protein
1406	 59.45	0	1540350..1540931	-	193	50842902	-	PPA1421	-	hypothetical protein
1407	 61.33	0	1541134..1542108	+	324	50842903	-	PPA1422	-	putative oxidoreductase
1408	 58.43	0	1542120..1543430	-	436	50842904	-	PPA1423	-	citrate synthase
1409	 61.76	0	1543430..1544794	-	454	50842905	-	PPA1424	-	hypothetical protein
1410	 58.11	0	1545599..1546732	+	377	50842906	-	PPA1425	-	putative lysophospholipase
1411	 57.41	0	1546949..1547164	+	71	50842907	-	PPA1427	-	CsbD-like protein
1412	 58.71	0	1547186..1547713	+	175	50842908	-	PPA1428	-	methylated-DNA--protein-cysteine methyltransferase
1413	 61.29	0	1547688..1548821	-	377	50842909	-	PPA1429	-	DNA processing / uptake protein
1414	 63.07	0	1548818..1550290	-	490	50842910	-	PPA1430	-	competence related protein (magnesium chelatase, ATPase)
1415	 60.52	0	1550338..1550760	-	140	50842911	-	PPA1431	-	hypothetical protein
1416	 53.21	-2	1551025..1551336	-	103	50842912	-	PPA1432	-	hypothetical protein
1417	 59.84	0	1551333..1551947	-	204	50842913	rnhB	PPA1433	-	ribonuclease HII
1418	 58.91	0	1551983..1552807	-	274	50842914	-	PPA1434	-	signal peptidase I
1419	 61.58	0	1552978..1553331	-	117	50842915	rplS	PPA1435	-	50S ribosomal protein L19
1420	 60.72	0	1553582..1554355	-	257	50842916	-	PPA1437	-	succinate dehydrogenase/fumarate reductase iron-sulfur subunit
1421	 60.31	0	1554352..1556379	-	675	50842917	sdhA	PPA1438	-	succinate dehydrogenase flavoprotein subunit
1422	 55.92	-1	1556379..1557113	-	244	50842918	-	PPA1439	-	succinate dehydrogenase cytochrome B-558 subunit
1423	 60.14	0	1557240..1557959	-	239	50842919	-	PPA1440	-	tRNA (guanine-N(1)-)-methyltransferase
1424	 58.52	0	1557962..1558501	-	179	50842920	-	PPA1441	-	16S rRNA processing protein RimM
1425	 62.01	0	1558609..1558887	-	92	50842921	-	PPA1442	-	hypothetical protein
1426	 61.04	0	1558890..1559333	-	147	50842922	-	PPA1443	-	30S ribosomal protein S16
1427	 60.57	0	1559524..1560687	-	387	50842923	-	PPA1444	-	amidohydrolase family protein
1428	 59.23	0	1560764..1562350	-	528	50842924	-	PPA1445	-	signal recognition particle protein
1429	 57.02	0	1562426..1563607	-	393	50842925	-	PPA1446	-	membrane-associated protein
1430	 61.88	0	1563618..1564808	-	396	50842926	-	PPA1447	-	signal recognition particle receptor
1431	 51.52	-2	1565086..1565745	-	219	50842927	-	PPA1448	-	GtrA-like protein
1432	 62.28	0	1566351..1566692	+	113	50842928	-	PPA1449	-	HicB family protein
1433	 60.32	0	1566814..1567065	+	83	50842929	-	PPA1450	-	hypothetical protein
1434	 59.01	0	1567089..1567859	-	256	50842930	-	PPA1451	-	formamidopyrimidine-DNA glycosylase
1435	 59.24	0	1567852..1568592	-	246	161621795	rnc	PPA1452	-	ribonuclease III
1436	 62.21	0	1568858..1569418	-	186	50842932	-	PPA1453	-	metal-binding protein
1437	 57.29	0	1569457..1570992	+	511	50842933	-	PPA1454	-	solute-binding protein of transport system
1438	 59.25	0	1571072..1572028	+	318	50842934	-	PPA1455	-	transport system permease
1439	 59.53	0	1572025..1572921	+	298	50842935	-	PPA1456	-	transport system permease
1440	 59.05	0	1572942..1573952	-	336	50842936	-	PPA1457	-	LacI family transcriptional regulator
1441	 52.11	-2	1574043..1574255	-	70	50842937	-	PPA1458	-	hypothetical protein
1442	 60.96	0	1574904..1577987	+	1027	50842938	-	PPA1459	-	alpha-mannosidase
1443	 60.67	0	1577984..1579183	+	399	50842939	-	PPA1460	-	hypothetical protein
1444	 51.01	-2	1579263..1579460	+	65	50842940	-	PPA1461	-	putative short-chain dehydrogenase fragment
1445	 46.94	-2	1579437..1579730	-	97	50842941	-	PPA1462	-	hypothetical protein
1446	 55.49	-1	1579669..1580142	-	157	50842942	-	PPA1463	-	phosphopantetheine adenylyltransferase
1447	 60.26	0	1580139..1580747	-	202	50842943	-	PPA1464	-	putative methylase
1448	 59.81	0	1580884..1581306	+	140	50842944	-	PPA1465	-	hypothetical protein
1449	 61.11	0	1581410..1583659	-	749	50842945	-	PPA1466	-	ATP-dependent DNA helicase RecG
1450	 58.48	0	1584036..1585709	-	557	50842946	-	PPA1467	-	metal dependent hydrolase
1451	 59.20	0	1586166..1587905	-	579	50842947	-	PPA1468	-	pyruvate dehydrogenase
1452	 56.79	-1	1588013..1588852	-	279	50842948	-	PPA1469	-	hypothetical protein
1453	 59.65	0	1588845..1589585	-	246	50842949	-	PPA1470	-	dihydrodipicolinate reductase
1454	 61.13	0	1589752..1591953	-	733	50842950	-	PPA1471	-	polynucleotide phosphorylase/polyadenylase
1455	 53.03	-2	1592274..1592537	-	87	50842951	-	PPA1472	-	30S ribosomal protein S15
1456	 60.63	0	1592777..1593919	-	380	50842952	-	PPA1474	-	riboflavin biosynthesis protein RibF (riboflavin kinase)
1457	 55.69	-1	1593825..1594844	-	339	50842953	-	PPA1475	-	substrate binding component of glycine/betaine transport system
1458	 57.90	0	1594875..1595741	-	288	50842954	-	PPA1476	-	glycine betaine transport system permease protein
1459	 57.65	0	1595747..1597054	-	435	50842955	-	PPA1477	-	putative glycine betaine/proline ABC transporter
1460	 61.26	0	1597386..1598273	-	295	50842956	truB	PPA1478	-	tRNA pseudouridine synthase B
1461	 58.41	0	1598326..1598652	-	108	50842957	-	PPA1479	-	hypothetical protein
1462	 57.83	0	1598693..1598941	-	82	50842958	-	PPA1480	-	hypothetical protein
1463	 51.89	-2	1599376..1599639	-	87	50842959	-	PPA1481	-	hypothetical protein
1464	 61.83	0	1599757..1601679	+	640	50842960	-	PPA1482	-	putative regulator of sorbitol operon
1465	 61.54	0	1601676..1602182	+	168	50842961	-	PPA1483	-	sorbitol operon activator
1466	 59.24	0	1602266..1602844	+	192	50842962	-	PPA1484	-	PTS system enzyme II sorbitol-specific factor
1467	 61.62	0	1602846..1603895	+	349	50842963	-	PPA1485	-	PTS system, glucitol/sorbitol-specific IIBC component
1468	 62.60	0	1603923..1604291	+	122	50842964	-	PPA1486	-	PTS system, glucitol/sorbitol-specific IIA component
1469	 63.00	0	1604288..1604587	+	99	50842965	-	PPA1487	-	PTS HPr component
1470	 65.43	+1	1604590..1605963	+	457	50842966	-	PPA1488	-	arabinose operon protein AraM
1471	 62.27	0	1606027..1606458	-	143	50842967	rbfA	PPA1489	-	ribosome-binding factor A
1472	 65.36	+1	1606539..1607150	-	203	50842968	-	PPA1490	-	hypothetical protein
60.05	MEAN

3.20	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.