IslandPathversion 1.0

IslandPath Analysis: Propionibacterium acnes KPA171202



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.05 STD DEV: 3.20
Propionibacterium acnes KPA171202, complete genome - 1..2560265
2297 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1340	 55.48	-1	1475356..1476258	-	300	50842836	-	PPA1352	-	cell division protein
1341	 56.19	-1	1476292..1476978	-	228	50842837	-	PPA1353	-	cell division ATP-binding protein
1342	 58.18	0	1476990..1478096	-	368	50842838	prfB	PPA1354	-	peptide chain release factor 2
1343	 57.52	0	1478410..1479120	+	236	50842839	-	PPA1355	-	hypothetical protein
1344	 59.17	0	1479182..1481782	-	866	50842840	-	PPA1356	-	FtsK/SpoIIIE protein
1345	 63.34	+1	1481873..1482835	-	320	50842841	-	PPA1357	-	thiamine monophosphate kinase
1346	 60.96	0	1482878..1483333	+	151	50842842	-	PPA1358	-	hypothetical protein
1347	 57.74	0	1483346..1484443	-	365	50842843	-	PPA1359	-	D-alanine--D-alanine ligase
1348	 61.78	0	1484492..1485268	-	258	50842844	-	PPA1360	-	putative acyltransferase
1349	 57.83	0	1485368..1485763	-	131	50842845	-	PPA1361	-	3-isopropylmalate dehydratase small subunit fragment
1350	 60.29	0	1485769..1486176	-	135	50842846	-	PPA1362	-	3-isopropylmalate dehydratase large subunit fragment
1351	 60.71	0	1486204..1486539	-	111	50842847	-	PPA1363	-	3-isopropylmalate dehydratase large subunit fragment
1352	 64.03	+1	1486763..1487482	+	239	50842848	-	PPA1364	-	putative transcriptional regulator
1353	 60.53	0	1487983..1488927	-	314	50842849	-	PPA1365	-	hypothetical protein
1354	 58.18	0	1488927..1489727	-	266	50842850	-	PPA1366	-	putative 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase
1355	 64.42	+1	1489808..1491097	+	429	50842851	deoA	PPA1367	-	thymidine phosphorylase
1356	 59.62	0	1491137..1492228	-	363	50842852	-	PPA1368	-	branched-chain amino acid aminotransferase
1357	 62.00	0	1493176..1493754	+	192	50842853	-	PPA1371	-	putative transferase
1358	 58.50	0	1493821..1494849	-	342	50842854	-	PPA1372	-	ketol-acid reductoisomerase
1359	 55.28	-1	1495026..1495271	-	81	50842855	-	PPA1373	-	acetolactate synthase small subunit fragment
1360	 57.89	0	1495322..1495549	-	75	50842856	-	PPA1374	-	acetolactate synthase large subunit fragment
1361	 58.88	0	1495957..1496367	-	136	50842857	-	PPA1375	-	putative cell-cycle regulation histidine triad protein
1362	 61.11	0	1496412..1497167	-	251	50842858	-	PPA1376	-	imidazole glycerol phosphate synthase subunit HisF
1363	 60.78	0	1497223..1499976	-	917	50842859	-	PPA1377	-	superfamily II RNA helicase
1364	 53.31	-2	1500158..1500943	-	261	50842860	-	PPA1378	-	Sec-independent protein translocase protein TatC-like protein
1365	 57.20	0	1501031..1501294	-	87	50842861	-	PPA1379	-	hypothetical protein
1366	 56.86	0	1501359..1501562	-	67	50842862	-	PPA1380	-	hypothetical protein
1367	 61.61	0	1501562..1502530	-	322	50842863	-	PPA1381	-	regulatory protein
1368	 61.99	0	1502527..1503489	-	320	50842864	-	PPA1382	-	DeoR family transcriptional regulator
1369	 63.51	+1	1503535..1504578	+	347	50842865	-	PPA1383	-	glutamyl-tRNA synthetase
1370	 57.24	0	1504621..1505745	-	374	50842866	-	PPA1384	-	putative peptidyl-prolyl cis-trans isomerase
1371	 59.89	0	1505705..1506442	-	245	50842867	-	PPA1385	-	ribosomal large subunit pseudouridine synthase B
1372	 59.02	0	1506460..1506825	-	121	50842868	-	PPA1386	-	hypothetical protein
1373	 59.81	0	1506810..1507757	-	315	50842869	-	PPA1387	-	chromosome partitioning protein
1374	 61.35	0	1507819..1508739	-	306	50842870	xerD	PPA1388	-	site-specific tyrosine recombinase XerD
1375	 61.36	0	1508736..1509395	-	219	50842871	-	PPA1389	-	putative ADP-ribose pyrophosphatase
1376	 61.99	0	1509392..1511080	-	562	50842872	-	PPA1390	-	CTP synthetase
1377	 51.90	-2	1511253..1511462	-	69	50842873	-	PPA1391	-	hypothetical protein
1378	 54.11	-1	1511466..1511672	-	68	50842874	-	PPA1392	-	hypothetical protein
1379	 56.76	-1	1511609..1511830	-	73	50842875	-	PPA1393	-	hypothetical protein
1380	 62.08	0	1511846..1513525	-	559	50842876	-	PPA1394	-	DNA repair protein RecN
1381	 60.82	0	1513522..1514478	-	318	50842877	ppnK	PPA1395	-	inorganic polyphosphate/ATP-NAD kinase
1382	 58.56	0	1514497..1515273	-	258	50842878	-	PPA1396	-	putative cytotoxin/hemolysin
1383	 57.69	0	1515285..1515440	-	51	50842879	-	PPA1397	-	hypothetical protein
1384	 57.35	0	1515544..1516176	-	210	50842880	-	PPA1398	-	cobalt permease or related transporter
1385	 58.25	0	1516173..1517123	-	316	50842881	-	PPA1399	-	ABC-type transporter, ATPase component
1386	 58.77	0	1516922..1517491	-	189	50842882	-	PPA1400	-	BioY family protein
1387	 59.86	0	1517562..1518560	-	332	50842883	-	PPA1401	-	putative hydrolase
1388	 61.75	0	1518557..1519735	-	392	50842884	-	PPA1402	-	hypothetical protein
1389	 58.08	0	1525654..1525851	-	65	50842885	-	PPA1403	-	hypothetical protein
1390	 57.76	0	1525985..1527241	-	418	50842886	-	PPA1404	-	tyrosyl-tRNA synthetase
1391	 57.01	0	1527325..1527873	-	182	50842887	-	PPA1405	-	arginine repressor
1392	 57.84	0	1527969..1528580	-	203	50842888	-	PPA1406	-	tetracycline repressor protein
1393	 60.15	0	1528593..1529759	+	388	50842889	-	PPA1407	-	biotin synthase
1394	 60.91	0	1530001..1532520	-	839	50842890	-	PPA1408	-	phenylalanyl-tRNA synthetase beta chain
1395	 61.17	0	1532517..1533626	-	369	50842891	pheS	PPA1409	-	phenylalanyl-tRNA synthetase subunit alpha
1396	 60.34	0	1533749..1534570	-	273	50842892	-	PPA1410	-	putative rRNA methylase
1397	 59.41	0	1534572..1534943	-	123	50842893	rplT	PPA1412	-	50S ribosomal protein L20
1398	 62.32	0	1535047..1535253	-	68	50842894	rpmI	PPA1413	-	50S ribosomal protein L35
1399	 59.36	0	1535354..1536160	-	268	50842895	infC	PPA1414	-	translation initiation factor IF-3
1400	 61.18	0	1536349..1536822	-	157	50842896	-	PPA1415	-	hypothetical protein
1401	 60.84	0	1536889..1537506	+	205	50842897	-	PPA1416	-	hypothetical protein
1402	 56.61	-1	1537568..1538422	-	284	50842898	hisG	PPA1417	-	ATP phosphoribosyltransferase
1403	 54.31	-1	1538480..1538746	-	88	50842899	hisE	PPA1418	-	phosphoribosyl-ATP pyrophosphatase
1404	 58.44	0	1538813..1539493	-	226	50842900	-	PPA1419	-	nicotinamide mononucleotide transporter
1405	 60.38	0	1539553..1540347	-	264	50842901	-	PPA1420	-	hypothetical protein
1406	 59.45	0	1540350..1540931	-	193	50842902	-	PPA1421	-	hypothetical protein
1407	 61.33	0	1541134..1542108	+	324	50842903	-	PPA1422	-	putative oxidoreductase
1408	 58.43	0	1542120..1543430	-	436	50842904	-	PPA1423	-	citrate synthase
1409	 61.76	0	1543430..1544794	-	454	50842905	-	PPA1424	-	hypothetical protein
1410	 58.11	0	1545599..1546732	+	377	50842906	-	PPA1425	-	putative lysophospholipase
1411	 57.41	0	1546949..1547164	+	71	50842907	-	PPA1427	-	CsbD-like protein
1412	 58.71	0	1547186..1547713	+	175	50842908	-	PPA1428	-	methylated-DNA--protein-cysteine methyltransferase
1413	 61.29	0	1547688..1548821	-	377	50842909	-	PPA1429	-	DNA processing / uptake protein
1414	 63.07	0	1548818..1550290	-	490	50842910	-	PPA1430	-	competence related protein (magnesium chelatase, ATPase)
1415	 60.52	0	1550338..1550760	-	140	50842911	-	PPA1431	-	hypothetical protein
1416	 53.21	-2	1551025..1551336	-	103	50842912	-	PPA1432	-	hypothetical protein
1417	 59.84	0	1551333..1551947	-	204	50842913	rnhB	PPA1433	-	ribonuclease HII
1418	 58.91	0	1551983..1552807	-	274	50842914	-	PPA1434	-	signal peptidase I
1419	 61.58	0	1552978..1553331	-	117	50842915	rplS	PPA1435	-	50S ribosomal protein L19
1420	 60.72	0	1553582..1554355	-	257	50842916	-	PPA1437	-	succinate dehydrogenase/fumarate reductase iron-sulfur subunit
1421	 60.31	0	1554352..1556379	-	675	50842917	sdhA	PPA1438	-	succinate dehydrogenase flavoprotein subunit
1422	 55.92	-1	1556379..1557113	-	244	50842918	-	PPA1439	-	succinate dehydrogenase cytochrome B-558 subunit
1423	 60.14	0	1557240..1557959	-	239	50842919	-	PPA1440	-	tRNA (guanine-N(1)-)-methyltransferase
1424	 58.52	0	1557962..1558501	-	179	50842920	-	PPA1441	-	16S rRNA processing protein RimM
1425	 62.01	0	1558609..1558887	-	92	50842921	-	PPA1442	-	hypothetical protein
1426	 61.04	0	1558890..1559333	-	147	50842922	-	PPA1443	-	30S ribosomal protein S16
1427	 60.57	0	1559524..1560687	-	387	50842923	-	PPA1444	-	amidohydrolase family protein
1428	 59.23	0	1560764..1562350	-	528	50842924	-	PPA1445	-	signal recognition particle protein
1429	 57.02	0	1562426..1563607	-	393	50842925	-	PPA1446	-	membrane-associated protein
1430	 61.88	0	1563618..1564808	-	396	50842926	-	PPA1447	-	signal recognition particle receptor
1431	 51.52	-2	1565086..1565745	-	219	50842927	-	PPA1448	-	GtrA-like protein
1432	 62.28	0	1566351..1566692	+	113	50842928	-	PPA1449	-	HicB family protein
1433	 60.32	0	1566814..1567065	+	83	50842929	-	PPA1450	-	hypothetical protein
1434	 59.01	0	1567089..1567859	-	256	50842930	-	PPA1451	-	formamidopyrimidine-DNA glycosylase
1435	 59.24	0	1567852..1568592	-	246	161621795	rnc	PPA1452	-	ribonuclease III
1436	 62.21	0	1568858..1569418	-	186	50842932	-	PPA1453	-	metal-binding protein
1437	 57.29	0	1569457..1570992	+	511	50842933	-	PPA1454	-	solute-binding protein of transport system
1438	 59.25	0	1571072..1572028	+	318	50842934	-	PPA1455	-	transport system permease
1439	 59.53	0	1572025..1572921	+	298	50842935	-	PPA1456	-	transport system permease
60.05	MEAN

3.20	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.