IslandPath Analysis: Propionibacterium acnes KPA171202



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 60.05   STD DEV: 3.20
Propionibacterium acnes KPA171202, complete genome - 1..2560265
2297 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1299	 59.49	0	1422553..1425702	+	1049	50842795	-	PPA1315	-	exodeoxyribonuclease V gamma chain
1300	 58.14	0	1425699..1428935	+	1078	50842796	-	PPA1316	-	exodeoxyribonuclease V beta chain
1301	 59.25	0	1428928..1430814	+	628	50842797	-	PPA1317	-	exonuclease V, alpha chain
1302	 60.56	0	1430845..1431597	-	250	50842798	-	PPA1318	-	NADH pyrophosphatase
1303	 58.96	0	1431788..1435006	-	1072	50842799	-	PPA1319	-	putative ATP-dependent DNA helicase
1304	 59.42	0	1435003..1438188	-	1061	50842800	-	PPA1320	-	putative ATP-dependent DNA helicase
1305	 55.93	-1	1438257..1438433	-	58	50842801	-	PPA1321	-	hypothetical protein
1306	 59.59	0	1438455..1439231	+	258	50842802	-	PPA1322	-	protein phosphatase
1307	 57.89	0	1439333..1439560	+	75	50842803	-	PPA1323	-	putative ATP-binding protein
1308	 58.20	0	1439601..1440167	-	188	50842804	-	PPA1324	-	hypothetical protein
1309	 60.38	0	1440298..1441983	+	561	50842805	-	PPA1325	-	putative ATP-dependent RNA helicase
1310	 58.65	0	1442125..1443633	+	502	50842806	-	PPA1326	-	L-asparagine permease
1311	 58.61	0	1443697..1444788	-	363	50842807	-	PPA1327	-	tryptophanyl-tRNA synthetase
1312	 59.35	0	1444933..1445793	-	286	50842808	-	PPA1328	-	metal-dependent phosphoesterase
1313	 57.88	0	1445790..1450409	-	1539	50842809	-	PPA1329	-	NAD-glutamate dehydrogenase
1314	 57.81	0	1450552..1451025	+	157	50842810	-	PPA1330	-	hypothetical protein
1315	 57.83	0	1451058..1451555	-	165	50842811	-	PPA1331	-	hypothetical protein
1316	 56.99	0	1451445..1452260	+	271	50842812	-	PPA1332	-	hypothetical protein
1317	 58.68	0	1452303..1455008	-	901	50842813	-	PPA1333	-	preprotein translocase subunit SecA
1318	 59.04	0	1455267..1455935	-	222	50842814	-	PPA1334	-	putative ribosomal S30AE, sigma 54 modulation protein
1319	 63.12	0	1456097..1456744	-	215	50842815	-	PPA1335	-	putative amidophosphoribosyltransferase
1320	 62.67	0	1456786..1458561	-	591	50842816	-	PPA1336	-	membrane spanning lipoprotein
1321	 60.89	0	1458558..1460306	-	582	50842817	-	PPA1337	-	signal transduction histidine kinase
1322	 59.35	0	1460153..1460863	-	236	50842818	-	PPA1338	-	putative response regulator
1323	 59.76	0	1460928..1461506	-	192	50842819	-	PPA1339	-	hypothetical protein
1324	 58.62	0	1462006..1462863	-	285	50842820	-	PPA1340	-	cAMP factor
1325	 49.07	-2	1462890..1463321	+	143	50842821	-	PPA2385	-	hypothetical protein
1326	 54.52	-1	1463260..1463646	+	128	50842822	-	PPA2386	-	hypothetical protein
1327	 54.26	-1	1463646..1463927	+	93	50842823	-	PPA2387	-	hypothetical protein
1328	 65.73	+1	1464348..1464560	-	70	50842824	-	PPA1341	-	hypothetical protein
1329	 58.15	0	1465049..1465588	+	179	50842825	-	PPA1342	-	hypothetical protein
1330	 51.34	-2	1466262..1466522	+	86	50842826	-	PPA2388	-	hypothetical protein
1331	 57.45	0	1466728..1467237	+	169	50842827	-	PPA2389	-	hypothetical protein
1332	 60.20	0	1467947..1468549	-	200	50842828	-	PPA1344	-	hypothetical protein
1333	 58.48	0	1468648..1469172	-	174	50842829	-	PPA1345	-	hypothetical protein
1334	 61.05	0	1469169..1470629	-	486	50842830	-	PPA1346	-	argininosuccinate lyase
1335	 58.31	0	1470717..1471913	-	398	50842831	-	PPA1347	-	acetylornithine aminotransferase
1336	 57.02	0	1471924..1472856	-	310	50842832	-	PPA1348	-	acetylglutamate kinase
1337	 59.01	0	1472853..1473662	-	269	50842833	argJ	PPA1349	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
1338	 58.76	0	1473674..1474798	-	374	50842834	-	PPA1350	-	N-acetyl-gamma-glutamyl-phosphate reductase
1339	 60.46	0	1474828..1475310	-	160	50842835	smpB	PPA1351	-	SsrA-binding protein
1340	 55.48	-1	1475356..1476258	-	300	50842836	-	PPA1352	-	cell division protein
1341	 56.19	-1	1476292..1476978	-	228	50842837	-	PPA1353	-	cell division ATP-binding protein
1342	 58.18	0	1476990..1478096	-	368	50842838	prfB	PPA1354	-	peptide chain release factor 2
1343	 57.52	0	1478410..1479120	+	236	50842839	-	PPA1355	-	hypothetical protein
1344	 59.17	0	1479182..1481782	-	866	50842840	-	PPA1356	-	FtsK/SpoIIIE protein
1345	 63.34	+1	1481873..1482835	-	320	50842841	-	PPA1357	-	thiamine monophosphate kinase
1346	 60.96	0	1482878..1483333	+	151	50842842	-	PPA1358	-	hypothetical protein
1347	 57.74	0	1483346..1484443	-	365	50842843	-	PPA1359	-	D-alanine--D-alanine ligase
1348	 61.78	0	1484492..1485268	-	258	50842844	-	PPA1360	-	putative acyltransferase
1349	 57.83	0	1485368..1485763	-	131	50842845	-	PPA1361	-	3-isopropylmalate dehydratase small subunit fragment
1350	 60.29	0	1485769..1486176	-	135	50842846	-	PPA1362	-	3-isopropylmalate dehydratase large subunit fragment
1351	 60.71	0	1486204..1486539	-	111	50842847	-	PPA1363	-	3-isopropylmalate dehydratase large subunit fragment
1352	 64.03	+1	1486763..1487482	+	239	50842848	-	PPA1364	-	putative transcriptional regulator
1353	 60.53	0	1487983..1488927	-	314	50842849	-	PPA1365	-	hypothetical protein
1354	 58.18	0	1488927..1489727	-	266	50842850	-	PPA1366	-	putative 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase
1355	 64.42	+1	1489808..1491097	+	429	50842851	deoA	PPA1367	-	thymidine phosphorylase
1356	 59.62	0	1491137..1492228	-	363	50842852	-	PPA1368	-	branched-chain amino acid aminotransferase
1357	 62.00	0	1493176..1493754	+	192	50842853	-	PPA1371	-	putative transferase
1358	 58.50	0	1493821..1494849	-	342	50842854	-	PPA1372	-	ketol-acid reductoisomerase
1359	 55.28	-1	1495026..1495271	-	81	50842855	-	PPA1373	-	acetolactate synthase small subunit fragment
1360	 57.89	0	1495322..1495549	-	75	50842856	-	PPA1374	-	acetolactate synthase large subunit fragment
1361	 58.88	0	1495957..1496367	-	136	50842857	-	PPA1375	-	putative cell-cycle regulation histidine triad protein
1362	 61.11	0	1496412..1497167	-	251	50842858	-	PPA1376	-	imidazole glycerol phosphate synthase subunit HisF
1363	 60.78	0	1497223..1499976	-	917	50842859	-	PPA1377	-	superfamily II RNA helicase
1364	 53.31	-2	1500158..1500943	-	261	50842860	-	PPA1378	-	Sec-independent protein translocase protein TatC-like protein
1365	 57.20	0	1501031..1501294	-	87	50842861	-	PPA1379	-	hypothetical protein
1366	 56.86	0	1501359..1501562	-	67	50842862	-	PPA1380	-	hypothetical protein
1367	 61.61	0	1501562..1502530	-	322	50842863	-	PPA1381	-	regulatory protein
1368	 61.99	0	1502527..1503489	-	320	50842864	-	PPA1382	-	DeoR family transcriptional regulator
1369	 63.51	+1	1503535..1504578	+	347	50842865	-	PPA1383	-	glutamyl-tRNA synthetase
1370	 57.24	0	1504621..1505745	-	374	50842866	-	PPA1384	-	putative peptidyl-prolyl cis-trans isomerase
1371	 59.89	0	1505705..1506442	-	245	50842867	-	PPA1385	-	ribosomal large subunit pseudouridine synthase B
1372	 59.02	0	1506460..1506825	-	121	50842868	-	PPA1386	-	hypothetical protein
1373	 59.81	0	1506810..1507757	-	315	50842869	-	PPA1387	-	chromosome partitioning protein
1374	 61.35	0	1507819..1508739	-	306	50842870	xerD	PPA1388	-	site-specific tyrosine recombinase XerD
1375	 61.36	0	1508736..1509395	-	219	50842871	-	PPA1389	-	putative ADP-ribose pyrophosphatase
1376	 61.99	0	1509392..1511080	-	562	50842872	-	PPA1390	-	CTP synthetase
1377	 51.90	-2	1511253..1511462	-	69	50842873	-	PPA1391	-	hypothetical protein
1378	 54.11	-1	1511466..1511672	-	68	50842874	-	PPA1392	-	hypothetical protein
1379	 56.76	-1	1511609..1511830	-	73	50842875	-	PPA1393	-	hypothetical protein
1380	 62.08	0	1511846..1513525	-	559	50842876	-	PPA1394	-	DNA repair protein RecN
1381	 60.82	0	1513522..1514478	-	318	50842877	ppnK	PPA1395	-	inorganic polyphosphate/ATP-NAD kinase
1382	 58.56	0	1514497..1515273	-	258	50842878	-	PPA1396	-	putative cytotoxin/hemolysin
1383	 57.69	0	1515285..1515440	-	51	50842879	-	PPA1397	-	hypothetical protein
1384	 57.35	0	1515544..1516176	-	210	50842880	-	PPA1398	-	cobalt permease or related transporter
1385	 58.25	0	1516173..1517123	-	316	50842881	-	PPA1399	-	ABC-type transporter, ATPase component
1386	 58.77	0	1516922..1517491	-	189	50842882	-	PPA1400	-	BioY family protein
1387	 59.86	0	1517562..1518560	-	332	50842883	-	PPA1401	-	putative hydrolase
1388	 61.75	0	1518557..1519735	-	392	50842884	-	PPA1402	-	hypothetical protein
1389	 58.08	0	1525654..1525851	-	65	50842885	-	PPA1403	-	hypothetical protein
1390	 57.76	0	1525985..1527241	-	418	50842886	-	PPA1404	-	tyrosyl-tRNA synthetase
1391	 57.01	0	1527325..1527873	-	182	50842887	-	PPA1405	-	arginine repressor
1392	 57.84	0	1527969..1528580	-	203	50842888	-	PPA1406	-	tetracycline repressor protein
1393	 60.15	0	1528593..1529759	+	388	50842889	-	PPA1407	-	biotin synthase
1394	 60.91	0	1530001..1532520	-	839	50842890	-	PPA1408	-	phenylalanyl-tRNA synthetase beta chain
1395	 61.17	0	1532517..1533626	-	369	50842891	pheS	PPA1409	-	phenylalanyl-tRNA synthetase subunit alpha
1396	 60.34	0	1533749..1534570	-	273	50842892	-	PPA1410	-	putative rRNA methylase
1397	 59.41	0	1534572..1534943	-	123	50842893	rplT	PPA1412	-	50S ribosomal protein L20
1398	 62.32	0	1535047..1535253	-	68	50842894	rpmI	PPA1413	-	50S ribosomal protein L35
60.05	MEAN

3.20	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.