IslandPathversion 1.0

IslandPath Analysis: Propionibacterium acnes KPA171202



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.05 STD DEV: 3.20
Propionibacterium acnes KPA171202, complete genome - 1..2560265
2297 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1237	 58.31	0	1357490..1359391	-	633	50842733	rho	PPA1254	-	transcription termination factor Rho
1238	 61.28	0	1359690..1360580	-	296	50842734	-	PPA1256	-	homoserine kinase
1239	 59.29	0	1360591..1361661	-	356	50842735	-	PPA1257	-	threonine synthase
1240	 60.48	0	1361664..1362989	-	441	50842736	-	PPA1258	-	homoserine dehydrogenase
1241	 59.75	0	1363060..1364490	-	476	50842737	-	PPA1259	-	diaminopimelate decarboxylase
1242	 60.36	0	1364738..1366054	+	438	50842738	-	PPA1260	-	hypothetical protein
1243	 59.07	0	1366241..1369951	+	1236	50842739	kgd	PPA1261	-	alpha-ketoglutarate decarboxylase
1244	 55.90	-1	1370000..1370194	+	64	50842740	-	PPA1262	-	hypothetical protein
1245	 58.90	0	1370249..1370647	-	132	50842741	-	PPA1263	-	hypothetical protein
1246	 63.62	+1	1370755..1371180	+	141	50842742	-	PPA1264	-	transcription factor WhiB3
1247	 58.20	0	1371210..1372685	-	491	50842743	-	PPA1265	-	sensory transduction histidine kinase
1248	 55.43	-1	1373028..1373294	-	88	50842744	-	PPA2382	-	putative anti-sigma factor
1249	 58.55	0	1373291..1373968	-	225	50842745	-	PPA1266	-	RNA polymerase sigma factor RpoE
1250	 61.31	0	1373997..1374818	+	273	50842746	-	PPA1267	-	hypothetical protein
1251	 61.16	0	1374808..1376097	+	429	50842747	-	PPA1268	-	3-phosphoshikimate 1-carboxyvinyltransferase
1252	 61.08	0	1376099..1377100	+	333	50842748	-	PPA1269	-	putative GTPase
1253	 59.41	0	1377519..1378331	-	270	50842749	-	PPA1270	-	carboxypeptidase-related protein
1254	 61.63	0	1378433..1379326	+	297	50842750	-	PPA1271	-	putative inositol monophosphatase
1255	 55.26	-1	1379370..1380623	-	417	50842751	-	PPA1272	-	D-3-phosphoglycerate dehydrogenase
1256	 58.65	0	1380607..1381392	-	261	50842752	-	PPA1273	-	dipeptide ABC transporter ATP-binding
1257	 59.51	0	1381392..1382201	-	269	50842753	-	PPA1274	-	putative ATP-binding ABC transporter protein
1258	 60.02	0	1382201..1383013	-	270	50842754	-	PPA1275	-	permease protein of oligopeptide ABC transporter
1259	 58.59	0	1383010..1383987	-	325	50842755	-	PPA1276	-	ABC transporter permease protein
1260	 59.01	0	1383984..1385471	-	495	50842756	-	PPA1277	-	ABC transporter, substrate binding protein
1261	 57.48	0	1386164..1386718	+	184	50842757	-	PPA2384	-	hypothetical protein
1262	 52.02	-2	1387357..1387752	+	131	50842758	-	PPA2383	-	hypothetical protein
1263	 60.39	0	1388098..1388511	-	137	50842759	-	PPA1278	-	hypothetical protein
1264	 58.53	0	1388712..1388969	-	85	50842760	-	PPA1279	-	hypothetical protein
1265	 57.66	0	1388966..1389631	-	221	50842761	-	PPA1280	-	plasmid partition protein ParA
1266	 49.88	-2	1389906..1390727	-	273	50842762	-	PPA1281	-	hypothetical protein
1267	 61.74	0	1390884..1391147	+	87	50842763	-	PPA1282	-	hypothetical protein
1268	 60.42	0	1391140..1391379	-	79	50842764	-	PPA1283	-	hypothetical protein
1269	 47.99	-2	1392027..1393247	-	406	50842765	-	PPA1284	-	hypothetical protein
1270	 45.03	-2	1393836..1395143	-	435	50842766	-	PPA1285	-	putative biotin carboxylase
1271	 49.02	-2	1395130..1395843	-	237	50842767	-	PPA1286	-	putative thioesterase
1272	 49.25	-2	1395840..1397579	-	579	50842768	-	PPA1287	-	non-ribosomal peptide synthetase
1273	 46.01	-2	1397602..1400898	-	1098	50842769	-	PPA1288	-	surfactin synthetase subunit 1
1274	 45.76	-2	1400906..1401895	-	329	50842770	-	PPA1289	-	cysteine synthase/ornithine cyclodeaminase
1275	 45.31	-2	1401896..1402897	-	333	50842771	-	PPA1290	-	cystathionine beta-synthase
1276	 51.03	-2	1403184..1403912	+	242	50842772	-	PPA1291	-	biosurfactants production protein
1277	 45.74	-2	1404008..1404700	-	230	50842773	-	PPA1292	-	putative transcriptional regulator
1278	 62.28	0	1405625..1406422	-	265	50842774	-	PPA1293	-	putative ribonuclease E
1279	 63.91	+1	1406415..1408121	-	568	50842775	-	PPA1294	-	hypothetical protein
1280	 65.13	+1	1408118..1408639	-	173	50842776	-	PPA1295	-	hypothetical protein
1281	 63.00	0	1408709..1409308	-	199	50842777	-	PPA1296	-	putative permease
1282	 63.10	0	1409266..1410051	-	261	50842778	-	PPA1297	-	hypothetical protein
1283	 63.20	0	1409552..1410157	+	201	50842779	-	PPA1298	-	hypothetical protein
1284	 66.49	+2	1410174..1410755	+	193	50842780	-	PPA1299	-	hypothetical protein
1285	 65.46	+1	1410818..1411315	+	165	50842781	-	PPA1300	-	hypothetical protein
1286	 60.97	0	1411519..1412097	+	192	50842782	-	PPA1301	-	hypothetical protein
1287	 65.77	+1	1412132..1412353	-	73	50842783	-	PPA1303	-	hypothetical protein
1288	 58.28	0	1412439..1412951	-	170	50842784	-	PPA1304	-	hypothetical protein
1289	 61.43	0	1413304..1413666	+	120	50842785	-	PPA1305	-	hypothetical protein
1290	 49.54	-2	1413774..1413989	-	71	50842786	-	PPA1306	-	hypothetical protein
1291	 50.34	-2	1413971..1414564	+	197	50842787	-	PPA1307	-	hypothetical protein
1292	 59.90	0	1414846..1415436	-	196	50842788	-	PPA1308	-	putative universal stress protein UspA
1293	 59.67	0	1415507..1416049	-	180	50842789	-	PPA1309	-	hypothetical protein
1294	 58.27	0	1416067..1417245	-	392	50842790	-	PPA1310	-	protease
1295	 60.79	0	1417302..1418663	+	453	50842791	-	PPA1311	-	hypothetical protein
1296	 58.00	0	1418651..1419319	-	222	50842792	-	PPA1312	-	metal-dependent hydrolase
1297	 59.04	0	1419406..1420362	+	318	50842793	-	PPA1313	-	hypothetical protein
1298	 58.23	0	1420308..1422428	-	706	50842794	-	PPA1314	-	putative DNA helicase II-like protein
1299	 59.49	0	1422553..1425702	+	1049	50842795	-	PPA1315	-	exodeoxyribonuclease V gamma chain
1300	 58.14	0	1425699..1428935	+	1078	50842796	-	PPA1316	-	exodeoxyribonuclease V beta chain
1301	 59.25	0	1428928..1430814	+	628	50842797	-	PPA1317	-	exonuclease V, alpha chain
1302	 60.56	0	1430845..1431597	-	250	50842798	-	PPA1318	-	NADH pyrophosphatase
1303	 58.96	0	1431788..1435006	-	1072	50842799	-	PPA1319	-	putative ATP-dependent DNA helicase
1304	 59.42	0	1435003..1438188	-	1061	50842800	-	PPA1320	-	putative ATP-dependent DNA helicase
1305	 55.93	-1	1438257..1438433	-	58	50842801	-	PPA1321	-	hypothetical protein
1306	 59.59	0	1438455..1439231	+	258	50842802	-	PPA1322	-	protein phosphatase
1307	 57.89	0	1439333..1439560	+	75	50842803	-	PPA1323	-	putative ATP-binding protein
1308	 58.20	0	1439601..1440167	-	188	50842804	-	PPA1324	-	hypothetical protein
1309	 60.38	0	1440298..1441983	+	561	50842805	-	PPA1325	-	putative ATP-dependent RNA helicase
1310	 58.65	0	1442125..1443633	+	502	50842806	-	PPA1326	-	L-asparagine permease
1311	 58.61	0	1443697..1444788	-	363	50842807	-	PPA1327	-	tryptophanyl-tRNA synthetase
1312	 59.35	0	1444933..1445793	-	286	50842808	-	PPA1328	-	metal-dependent phosphoesterase
1313	 57.88	0	1445790..1450409	-	1539	50842809	-	PPA1329	-	NAD-glutamate dehydrogenase
1314	 57.81	0	1450552..1451025	+	157	50842810	-	PPA1330	-	hypothetical protein
1315	 57.83	0	1451058..1451555	-	165	50842811	-	PPA1331	-	hypothetical protein
1316	 56.99	0	1451445..1452260	+	271	50842812	-	PPA1332	-	hypothetical protein
1317	 58.68	0	1452303..1455008	-	901	50842813	-	PPA1333	-	preprotein translocase subunit SecA
1318	 59.04	0	1455267..1455935	-	222	50842814	-	PPA1334	-	putative ribosomal S30AE, sigma 54 modulation protein
1319	 63.12	0	1456097..1456744	-	215	50842815	-	PPA1335	-	putative amidophosphoribosyltransferase
1320	 62.67	0	1456786..1458561	-	591	50842816	-	PPA1336	-	membrane spanning lipoprotein
1321	 60.89	0	1458558..1460306	-	582	50842817	-	PPA1337	-	signal transduction histidine kinase
1322	 59.35	0	1460153..1460863	-	236	50842818	-	PPA1338	-	putative response regulator
1323	 59.76	0	1460928..1461506	-	192	50842819	-	PPA1339	-	hypothetical protein
1324	 58.62	0	1462006..1462863	-	285	50842820	-	PPA1340	-	cAMP factor
1325	 49.07	-2	1462890..1463321	+	143	50842821	-	PPA2385	-	hypothetical protein
1326	 54.52	-1	1463260..1463646	+	128	50842822	-	PPA2386	-	hypothetical protein
1327	 54.26	-1	1463646..1463927	+	93	50842823	-	PPA2387	-	hypothetical protein
1328	 65.73	+1	1464348..1464560	-	70	50842824	-	PPA1341	-	hypothetical protein
1329	 58.15	0	1465049..1465588	+	179	50842825	-	PPA1342	-	hypothetical protein
1330	 51.34	-2	1466262..1466522	+	86	50842826	-	PPA2388	-	hypothetical protein
1331	 57.45	0	1466728..1467237	+	169	50842827	-	PPA2389	-	hypothetical protein
1332	 60.20	0	1467947..1468549	-	200	50842828	-	PPA1344	-	hypothetical protein
1333	 58.48	0	1468648..1469172	-	174	50842829	-	PPA1345	-	hypothetical protein
1334	 61.05	0	1469169..1470629	-	486	50842830	-	PPA1346	-	argininosuccinate lyase
1335	 58.31	0	1470717..1471913	-	398	50842831	-	PPA1347	-	acetylornithine aminotransferase
1336	 57.02	0	1471924..1472856	-	310	50842832	-	PPA1348	-	acetylglutamate kinase
60.05	MEAN

3.20	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.