IslandPath Analysis: Propionibacterium acnes KPA171202



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 60.05   STD DEV: 3.20
Propionibacterium acnes KPA171202, complete genome - 1..2560265
2297 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1214	 56.73	-1	1338171..1338905	-	244	50842710	-	PPA1230	-	hypothetical protein
1215	 57.84	0	1339073..1339876	-	267	50842711	-	PPA1231	-	cAMP factor
1216	 57.04	0	1340258..1340683	-	141	50842712	-	PPA1232	-	hypothetical protein
1217	 59.57	0	1340864..1342060	-	398	50842713	-	PPA1233	-	putative multidrug-efflux transporter protein
1218	 57.54	0	1342319..1342888	+	189	50842714	-	PPA1234	-	hypothetical protein
1219	 61.77	0	1342891..1343727	+	278	50842715	-	PPA1235	-	uracil-DNA glycosylase
1220	 55.11	-1	1343890..1344555	+	221	50842716	-	PPA1236	-	cobalamin adenosyltransferase
1221	 58.91	0	1344556..1345032	-	158	50842717	-	PPA1237	-	putative secreted protein
1222	 60.09	0	1345182..1345622	-	146	50842718	-	PPA1238	-	ATP synthase epsilon chain
1223	 59.52	0	1345628..1347082	-	484	50842719	-	PPA1239	-	F0F1 ATP synthase subunit beta
1224	 57.46	0	1347094..1348038	-	314	50842720	-	PPA1240	-	ATP synthase gamma chain
1225	 58.42	0	1348042..1349679	-	545	50842721	-	PPA1241	-	F0F1 ATP synthase subunit alpha
1226	 61.74	0	1349733..1350524	-	263	50842722	-	PPA1242	-	ATP synthase delta chain
1227	 61.62	0	1350521..1351075	-	184	50842723	-	PPA1243	-	F0F1 ATP synthase subunit B
1228	 61.26	0	1351086..1351307	-	73	50842724	-	PPA1244	-	ATP synthase C chain
1229	 52.64	-2	1351398..1352174	-	258	50842725	-	PPA1245	-	ATP synthase A chain
1230	 56.47	-1	1352171..1352425	-	84	50842726	-	PPA1246	-	hypothetical protein
1231	 60.00	0	1352464..1352958	-	164	50842727	-	PPA1247	-	putative cyanate permease
1232	 57.25	0	1353115..1354218	-	367	50842728	-	PPA1248	-	putative undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase
1233	 58.77	0	1354227..1355150	-	307	50842729	-	PPA1249	-	SUA5 related protein
1234	 59.93	0	1355083..1355958	-	291	50842730	-	PPA1250	-	putative methylase
1235	 58.38	0	1355958..1357043	-	361	50842731	-	PPA1252	-	peptide chain release factor 1
1236	 57.14	0	1357165..1357374	-	69	50842732	rpmE	PPA1253	-	50S ribosomal protein L31
1237	 58.31	0	1357490..1359391	-	633	50842733	rho	PPA1254	-	transcription termination factor Rho
1238	 61.28	0	1359690..1360580	-	296	50842734	-	PPA1256	-	homoserine kinase
1239	 59.29	0	1360591..1361661	-	356	50842735	-	PPA1257	-	threonine synthase
1240	 60.48	0	1361664..1362989	-	441	50842736	-	PPA1258	-	homoserine dehydrogenase
1241	 59.75	0	1363060..1364490	-	476	50842737	-	PPA1259	-	diaminopimelate decarboxylase
1242	 60.36	0	1364738..1366054	+	438	50842738	-	PPA1260	-	hypothetical protein
1243	 59.07	0	1366241..1369951	+	1236	50842739	kgd	PPA1261	-	alpha-ketoglutarate decarboxylase
1244	 55.90	-1	1370000..1370194	+	64	50842740	-	PPA1262	-	hypothetical protein
1245	 58.90	0	1370249..1370647	-	132	50842741	-	PPA1263	-	hypothetical protein
1246	 63.62	+1	1370755..1371180	+	141	50842742	-	PPA1264	-	transcription factor WhiB3
1247	 58.20	0	1371210..1372685	-	491	50842743	-	PPA1265	-	sensory transduction histidine kinase
1248	 55.43	-1	1373028..1373294	-	88	50842744	-	PPA2382	-	putative anti-sigma factor
1249	 58.55	0	1373291..1373968	-	225	50842745	-	PPA1266	-	RNA polymerase sigma factor RpoE
1250	 61.31	0	1373997..1374818	+	273	50842746	-	PPA1267	-	hypothetical protein
1251	 61.16	0	1374808..1376097	+	429	50842747	-	PPA1268	-	3-phosphoshikimate 1-carboxyvinyltransferase
1252	 61.08	0	1376099..1377100	+	333	50842748	-	PPA1269	-	putative GTPase
1253	 59.41	0	1377519..1378331	-	270	50842749	-	PPA1270	-	carboxypeptidase-related protein
1254	 61.63	0	1378433..1379326	+	297	50842750	-	PPA1271	-	putative inositol monophosphatase
1255	 55.26	-1	1379370..1380623	-	417	50842751	-	PPA1272	-	D-3-phosphoglycerate dehydrogenase
1256	 58.65	0	1380607..1381392	-	261	50842752	-	PPA1273	-	dipeptide ABC transporter ATP-binding
1257	 59.51	0	1381392..1382201	-	269	50842753	-	PPA1274	-	putative ATP-binding ABC transporter protein
1258	 60.02	0	1382201..1383013	-	270	50842754	-	PPA1275	-	permease protein of oligopeptide ABC transporter
1259	 58.59	0	1383010..1383987	-	325	50842755	-	PPA1276	-	ABC transporter permease protein
1260	 59.01	0	1383984..1385471	-	495	50842756	-	PPA1277	-	ABC transporter, substrate binding protein
1261	 57.48	0	1386164..1386718	+	184	50842757	-	PPA2384	-	hypothetical protein
1262	 52.02	-2	1387357..1387752	+	131	50842758	-	PPA2383	-	hypothetical protein
1263	 60.39	0	1388098..1388511	-	137	50842759	-	PPA1278	-	hypothetical protein
1264	 58.53	0	1388712..1388969	-	85	50842760	-	PPA1279	-	hypothetical protein
1265	 57.66	0	1388966..1389631	-	221	50842761	-	PPA1280	-	plasmid partition protein ParA
1266	 49.88	-2	1389906..1390727	-	273	50842762	-	PPA1281	-	hypothetical protein
1267	 61.74	0	1390884..1391147	+	87	50842763	-	PPA1282	-	hypothetical protein
1268	 60.42	0	1391140..1391379	-	79	50842764	-	PPA1283	-	hypothetical protein
1269	 47.99	-2	1392027..1393247	-	406	50842765	-	PPA1284	-	hypothetical protein
1270	 45.03	-2	1393836..1395143	-	435	50842766	-	PPA1285	-	putative biotin carboxylase
1271	 49.02	-2	1395130..1395843	-	237	50842767	-	PPA1286	-	putative thioesterase
1272	 49.25	-2	1395840..1397579	-	579	50842768	-	PPA1287	-	non-ribosomal peptide synthetase
1273	 46.01	-2	1397602..1400898	-	1098	50842769	-	PPA1288	-	surfactin synthetase subunit 1
1274	 45.76	-2	1400906..1401895	-	329	50842770	-	PPA1289	-	cysteine synthase/ornithine cyclodeaminase
1275	 45.31	-2	1401896..1402897	-	333	50842771	-	PPA1290	-	cystathionine beta-synthase
1276	 51.03	-2	1403184..1403912	+	242	50842772	-	PPA1291	-	biosurfactants production protein
1277	 45.74	-2	1404008..1404700	-	230	50842773	-	PPA1292	-	putative transcriptional regulator
1278	 62.28	0	1405625..1406422	-	265	50842774	-	PPA1293	-	putative ribonuclease E
1279	 63.91	+1	1406415..1408121	-	568	50842775	-	PPA1294	-	hypothetical protein
1280	 65.13	+1	1408118..1408639	-	173	50842776	-	PPA1295	-	hypothetical protein
1281	 63.00	0	1408709..1409308	-	199	50842777	-	PPA1296	-	putative permease
1282	 63.10	0	1409266..1410051	-	261	50842778	-	PPA1297	-	hypothetical protein
1283	 63.20	0	1409552..1410157	+	201	50842779	-	PPA1298	-	hypothetical protein
1284	 66.49	+2	1410174..1410755	+	193	50842780	-	PPA1299	-	hypothetical protein
1285	 65.46	+1	1410818..1411315	+	165	50842781	-	PPA1300	-	hypothetical protein
1286	 60.97	0	1411519..1412097	+	192	50842782	-	PPA1301	-	hypothetical protein
1287	 65.77	+1	1412132..1412353	-	73	50842783	-	PPA1303	-	hypothetical protein
1288	 58.28	0	1412439..1412951	-	170	50842784	-	PPA1304	-	hypothetical protein
1289	 61.43	0	1413304..1413666	+	120	50842785	-	PPA1305	-	hypothetical protein
1290	 49.54	-2	1413774..1413989	-	71	50842786	-	PPA1306	-	hypothetical protein
1291	 50.34	-2	1413971..1414564	+	197	50842787	-	PPA1307	-	hypothetical protein
1292	 59.90	0	1414846..1415436	-	196	50842788	-	PPA1308	-	putative universal stress protein UspA
1293	 59.67	0	1415507..1416049	-	180	50842789	-	PPA1309	-	hypothetical protein
1294	 58.27	0	1416067..1417245	-	392	50842790	-	PPA1310	-	protease
1295	 60.79	0	1417302..1418663	+	453	50842791	-	PPA1311	-	hypothetical protein
1296	 58.00	0	1418651..1419319	-	222	50842792	-	PPA1312	-	metal-dependent hydrolase
1297	 59.04	0	1419406..1420362	+	318	50842793	-	PPA1313	-	hypothetical protein
1298	 58.23	0	1420308..1422428	-	706	50842794	-	PPA1314	-	putative DNA helicase II-like protein
1299	 59.49	0	1422553..1425702	+	1049	50842795	-	PPA1315	-	exodeoxyribonuclease V gamma chain
1300	 58.14	0	1425699..1428935	+	1078	50842796	-	PPA1316	-	exodeoxyribonuclease V beta chain
1301	 59.25	0	1428928..1430814	+	628	50842797	-	PPA1317	-	exonuclease V, alpha chain
1302	 60.56	0	1430845..1431597	-	250	50842798	-	PPA1318	-	NADH pyrophosphatase
1303	 58.96	0	1431788..1435006	-	1072	50842799	-	PPA1319	-	putative ATP-dependent DNA helicase
1304	 59.42	0	1435003..1438188	-	1061	50842800	-	PPA1320	-	putative ATP-dependent DNA helicase
1305	 55.93	-1	1438257..1438433	-	58	50842801	-	PPA1321	-	hypothetical protein
1306	 59.59	0	1438455..1439231	+	258	50842802	-	PPA1322	-	protein phosphatase
1307	 57.89	0	1439333..1439560	+	75	50842803	-	PPA1323	-	putative ATP-binding protein
1308	 58.20	0	1439601..1440167	-	188	50842804	-	PPA1324	-	hypothetical protein
1309	 60.38	0	1440298..1441983	+	561	50842805	-	PPA1325	-	putative ATP-dependent RNA helicase
1310	 58.65	0	1442125..1443633	+	502	50842806	-	PPA1326	-	L-asparagine permease
1311	 58.61	0	1443697..1444788	-	363	50842807	-	PPA1327	-	tryptophanyl-tRNA synthetase
1312	 59.35	0	1444933..1445793	-	286	50842808	-	PPA1328	-	metal-dependent phosphoesterase
1313	 57.88	0	1445790..1450409	-	1539	50842809	-	PPA1329	-	NAD-glutamate dehydrogenase
60.05	MEAN

3.20	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.