IslandPathversion 1.0

IslandPath Analysis: Propionibacterium acnes KPA171202



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.05 STD DEV: 3.20
Propionibacterium acnes KPA171202, complete genome - 1..2560265
2297 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1175	 62.93	0	1296934..1297281	+	115	50842671	-	PPA1191	-	DNA-directed RNA polymerase subunit omega
1176	 61.56	0	1297294..1298526	+	410	50842672	-	PPA1192	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
1177	 59.72	0	1298566..1299759	+	397	50842673	-	PPA1193	-	S-adenosylmethionine synthetase
1178	 61.02	0	1299798..1301816	+	672	50842674	-	PPA1194	-	primosome assembly protein PriA
1179	 61.08	0	1301835..1302782	+	315	50842675	-	PPA1195	-	methionyl-tRNA formyltransferase
1180	 60.64	0	1302779..1304155	+	458	50842676	-	PPA1196	-	tRNA/rRNA cytosine-C5-methylase
1181	 51.88	-2	1304295..1305065	+	256	50842677	-	PPA1197	-	hypothetical protein
1182	 58.04	0	1305348..1306193	+	281	50842678	-	PPA1198	-	cAMP factor
1183	 58.63	0	1306372..1307043	+	223	50842679	-	PPA1199	-	ribulose-phosphate 3-epimerase
1184	 59.80	0	1307060..1307845	-	261	50842680	-	PPA1200	-	hypothetical protein
1185	 59.55	0	1307978..1309987	+	669	50842681	-	PPA1201	-	putative methyltransferase
1186	 60.26	0	1310062..1310451	-	129	50842682	-	PPA1202	-	hypothetical protein
1187	 53.04	-2	1310448..1312634	-	728	50842683	-	PPA1203	-	membrane spanning protein YhgE
1188	 56.95	0	1312638..1313543	-	301	50842684	-	PPA1204	-	hypothetical protein
1189	 57.33	0	1313543..1314163	-	206	50842685	-	PPA1205	-	TetR family transcriptional regulator
1190	 60.10	0	1314310..1315146	+	278	50842686	-	PPA1206	-	20S proteasome beta-subunit precursor
1191	 60.21	0	1315143..1315823	+	226	50842687	-	PPA1207	-	20S proteasome alpha-subunit
1192	 60.85	0	1315636..1316907	+	423	50842688	-	PPA1208	-	prephenate dehydrogenase
1193	 58.78	0	1316970..1317641	+	223	50842689	-	PPA1209	-	cytidylate kinase
1194	 60.69	0	1317706..1319076	+	456	50842690	engA	PPA1210	-	GTP-binding protein EngA
1195	 60.58	0	1319378..1319689	-	103	50842691	-	PPA2381	-	hypothetical protein
1196	 55.85	-1	1319703..1320617	-	304	50842692	-	PPA1211	-	ribokinase family sugar kinase
1197	 56.15	-1	1320619..1321692	-	357	50842693	-	PPA1212	-	hypothetical protein
1198	 53.42	-2	1321679..1323112	-	477	50842694	-	PPA1213	-	L-fucose permease
1199	 61.01	0	1323109..1323762	-	217	50842695	-	PPA1214	-	deoxyribose-phosphate aldolase
1200	 58.16	0	1323864..1325003	-	379	50842696	-	PPA1215	-	sugar-binding domain-containing protein
1201	 58.17	0	1325051..1325839	+	262	50842697	-	PPA1216	-	HAD superfamily hydrolase
1202	 58.29	0	1325850..1327067	-	405	50842698	-	PPA1217	-	4-hydroxybutyrate coenzyme A transferase
1203	 56.27	-1	1327111..1328370	+	419	50842699	-	PPA1218	-	homoserine acetyltransferase
1204	 57.72	0	1328367..1328858	+	163	50842700	-	PPA1220	-	AsnC family transcriptional regulator
1205	 60.19	0	1328855..1330444	+	529	50842701	-	PPA1221	-	apolipoprotein N-acyltransferase
1206	 59.58	0	1330425..1331243	+	272	50842702	-	PPA1222	-	glycosyl transferase
1207	 55.26	-1	1331298..1331630	-	110	50842703	-	PPA1223	-	hypothetical protein
1208	 58.95	0	1331792..1332517	-	241	50842704	-	PPA1224	-	putative glycerophosphoryl diester phosphodiesterase
1209	 62.91	0	1332641..1333519	+	292	50842705	-	PPA1225	-	pyridoxamine kinase
1210	 58.89	0	1333456..1335102	-	548	50842706	-	PPA1226	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
1211	 58.90	0	1335132..1336535	+	467	50842707	-	PPA1227	-	dihydrolipoamide dehydrogenase
1212	 60.53	0	1336629..1337540	-	303	50842708	-	PPA1228	-	cation-efflux transport protein
1213	 57.86	0	1337537..1337956	-	139	50842709	-	PPA1229	-	putative transcription regulator
1214	 56.73	-1	1338171..1338905	-	244	50842710	-	PPA1230	-	hypothetical protein
1215	 57.84	0	1339073..1339876	-	267	50842711	-	PPA1231	-	cAMP factor
1216	 57.04	0	1340258..1340683	-	141	50842712	-	PPA1232	-	hypothetical protein
1217	 59.57	0	1340864..1342060	-	398	50842713	-	PPA1233	-	putative multidrug-efflux transporter protein
1218	 57.54	0	1342319..1342888	+	189	50842714	-	PPA1234	-	hypothetical protein
1219	 61.77	0	1342891..1343727	+	278	50842715	-	PPA1235	-	uracil-DNA glycosylase
1220	 55.11	-1	1343890..1344555	+	221	50842716	-	PPA1236	-	cobalamin adenosyltransferase
1221	 58.91	0	1344556..1345032	-	158	50842717	-	PPA1237	-	putative secreted protein
1222	 60.09	0	1345182..1345622	-	146	50842718	-	PPA1238	-	ATP synthase epsilon chain
1223	 59.52	0	1345628..1347082	-	484	50842719	-	PPA1239	-	F0F1 ATP synthase subunit beta
1224	 57.46	0	1347094..1348038	-	314	50842720	-	PPA1240	-	ATP synthase gamma chain
1225	 58.42	0	1348042..1349679	-	545	50842721	-	PPA1241	-	F0F1 ATP synthase subunit alpha
1226	 61.74	0	1349733..1350524	-	263	50842722	-	PPA1242	-	ATP synthase delta chain
1227	 61.62	0	1350521..1351075	-	184	50842723	-	PPA1243	-	F0F1 ATP synthase subunit B
1228	 61.26	0	1351086..1351307	-	73	50842724	-	PPA1244	-	ATP synthase C chain
1229	 52.64	-2	1351398..1352174	-	258	50842725	-	PPA1245	-	ATP synthase A chain
1230	 56.47	-1	1352171..1352425	-	84	50842726	-	PPA1246	-	hypothetical protein
1231	 60.00	0	1352464..1352958	-	164	50842727	-	PPA1247	-	putative cyanate permease
1232	 57.25	0	1353115..1354218	-	367	50842728	-	PPA1248	-	putative undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase
1233	 58.77	0	1354227..1355150	-	307	50842729	-	PPA1249	-	SUA5 related protein
1234	 59.93	0	1355083..1355958	-	291	50842730	-	PPA1250	-	putative methylase
1235	 58.38	0	1355958..1357043	-	361	50842731	-	PPA1252	-	peptide chain release factor 1
1236	 57.14	0	1357165..1357374	-	69	50842732	rpmE	PPA1253	-	50S ribosomal protein L31
1237	 58.31	0	1357490..1359391	-	633	50842733	rho	PPA1254	-	transcription termination factor Rho
1238	 61.28	0	1359690..1360580	-	296	50842734	-	PPA1256	-	homoserine kinase
1239	 59.29	0	1360591..1361661	-	356	50842735	-	PPA1257	-	threonine synthase
1240	 60.48	0	1361664..1362989	-	441	50842736	-	PPA1258	-	homoserine dehydrogenase
1241	 59.75	0	1363060..1364490	-	476	50842737	-	PPA1259	-	diaminopimelate decarboxylase
1242	 60.36	0	1364738..1366054	+	438	50842738	-	PPA1260	-	hypothetical protein
1243	 59.07	0	1366241..1369951	+	1236	50842739	kgd	PPA1261	-	alpha-ketoglutarate decarboxylase
1244	 55.90	-1	1370000..1370194	+	64	50842740	-	PPA1262	-	hypothetical protein
1245	 58.90	0	1370249..1370647	-	132	50842741	-	PPA1263	-	hypothetical protein
1246	 63.62	+1	1370755..1371180	+	141	50842742	-	PPA1264	-	transcription factor WhiB3
1247	 58.20	0	1371210..1372685	-	491	50842743	-	PPA1265	-	sensory transduction histidine kinase
1248	 55.43	-1	1373028..1373294	-	88	50842744	-	PPA2382	-	putative anti-sigma factor
1249	 58.55	0	1373291..1373968	-	225	50842745	-	PPA1266	-	RNA polymerase sigma factor RpoE
1250	 61.31	0	1373997..1374818	+	273	50842746	-	PPA1267	-	hypothetical protein
1251	 61.16	0	1374808..1376097	+	429	50842747	-	PPA1268	-	3-phosphoshikimate 1-carboxyvinyltransferase
1252	 61.08	0	1376099..1377100	+	333	50842748	-	PPA1269	-	putative GTPase
1253	 59.41	0	1377519..1378331	-	270	50842749	-	PPA1270	-	carboxypeptidase-related protein
1254	 61.63	0	1378433..1379326	+	297	50842750	-	PPA1271	-	putative inositol monophosphatase
1255	 55.26	-1	1379370..1380623	-	417	50842751	-	PPA1272	-	D-3-phosphoglycerate dehydrogenase
1256	 58.65	0	1380607..1381392	-	261	50842752	-	PPA1273	-	dipeptide ABC transporter ATP-binding
1257	 59.51	0	1381392..1382201	-	269	50842753	-	PPA1274	-	putative ATP-binding ABC transporter protein
1258	 60.02	0	1382201..1383013	-	270	50842754	-	PPA1275	-	permease protein of oligopeptide ABC transporter
1259	 58.59	0	1383010..1383987	-	325	50842755	-	PPA1276	-	ABC transporter permease protein
1260	 59.01	0	1383984..1385471	-	495	50842756	-	PPA1277	-	ABC transporter, substrate binding protein
1261	 57.48	0	1386164..1386718	+	184	50842757	-	PPA2384	-	hypothetical protein
1262	 52.02	-2	1387357..1387752	+	131	50842758	-	PPA2383	-	hypothetical protein
1263	 60.39	0	1388098..1388511	-	137	50842759	-	PPA1278	-	hypothetical protein
1264	 58.53	0	1388712..1388969	-	85	50842760	-	PPA1279	-	hypothetical protein
1265	 57.66	0	1388966..1389631	-	221	50842761	-	PPA1280	-	plasmid partition protein ParA
1266	 49.88	-2	1389906..1390727	-	273	50842762	-	PPA1281	-	hypothetical protein
1267	 61.74	0	1390884..1391147	+	87	50842763	-	PPA1282	-	hypothetical protein
1268	 60.42	0	1391140..1391379	-	79	50842764	-	PPA1283	-	hypothetical protein
1269	 47.99	-2	1392027..1393247	-	406	50842765	-	PPA1284	-	hypothetical protein
1270	 45.03	-2	1393836..1395143	-	435	50842766	-	PPA1285	-	putative biotin carboxylase
1271	 49.02	-2	1395130..1395843	-	237	50842767	-	PPA1286	-	putative thioesterase
1272	 49.25	-2	1395840..1397579	-	579	50842768	-	PPA1287	-	non-ribosomal peptide synthetase
1273	 46.01	-2	1397602..1400898	-	1098	50842769	-	PPA1288	-	surfactin synthetase subunit 1
1274	 45.76	-2	1400906..1401895	-	329	50842770	-	PPA1289	-	cysteine synthase/ornithine cyclodeaminase
60.05	MEAN

3.20	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.