IslandPath Analysis: Propionibacterium acnes KPA171202



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 60.05   STD DEV: 3.20
Propionibacterium acnes KPA171202, complete genome - 1..2560265
2297 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1089	 61.78	0	1198591..1199532	+	313	50842585	-	PPA1106	-	putative thioredoxin
1090	 61.29	0	1199728..1200471	+	247	50842586	-	PPA1107	-	haloacid dehalogenase-like hydrolase
1091	 56.46	-1	1200468..1202975	+	835	50842587	-	PPA1108	-	trehalose phosphorylase
1092	 60.51	0	1203075..1205120	-	681	50842588	-	PPA1109	-	phosphoenolpyruvate sugar phosphotransferase
1093	 60.88	0	1205389..1206183	-	264	50842589	-	PPA1110	-	putative pyrophosphohydrolase
1094	 59.02	0	1206207..1208141	-	644	50842590	-	PPA1111	-	glycogen branching enzyme
1095	 60.43	0	1208220..1209518	-	432	50842591	-	PPA1112	-	hypothetical protein
1096	 58.12	0	1209515..1211362	-	615	50842592	-	PPA1113	-	trehalose synthase
1097	 60.27	0	1211284..1213410	-	708	50842593	-	PPA1114	-	putative alpha-amylase
1098	 59.22	0	1213662..1215782	-	706	50842594	-	PPA1115	-	putative glycogen debranching enzyme
1099	 62.46	0	1215939..1217078	+	379	50842595	-	PPA1116	-	aminotransferase class V, putative cysteine desulfurase
1100	 60.22	0	1217168..1218268	+	366	50842596	trmU	PPA1117	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
1101	 61.90	0	1218265..1219251	+	328	50842597	-	PPA1118	-	putative B12 independent methionine synthase
1102	 58.22	0	1219262..1219474	+	70	50842598	-	PPA1119	-	hypothetical protein
1103	 54.78	-1	1219500..1220012	-	170	50842599	-	PPA1120	-	hypothetical protein
1104	 58.53	0	1220019..1220768	-	249	50842600	-	PPA1121	-	hypothetical protein
1105	 61.42	0	1220772..1221095	+	107	50842601	-	PPA1122	-	glutamyl-tRNA(Gln) amidotransferase subunit C
1106	 61.16	0	1221092..1222597	+	501	50842602	gatA	PPA1123	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
1107	 59.91	0	1222594..1224087	+	497	50842603	gatB	PPA1124	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
1108	 63.05	0	1224110..1224745	-	211	50842604	-	PPA1125	-	hypothetical protein
1109	 60.05	0	1224834..1225211	+	125	50842605	hisI	PPA1126	-	phosphoribosyl-AMP cyclohydrolase
1110	 60.06	0	1225208..1225525	+	105	50842606	-	PPA1127	-	hypothetical protein
1111	 59.86	0	1225522..1226211	+	229	50842607	-	PPA1128	-	hypothetical protein
1112	 63.89	+1	1226325..1226540	+	71	50842608	-	PPA1129	-	hypothetical protein
1113	 57.55	0	1226541..1227341	+	266	50842609	-	PPA1130	-	indole-3-glycerol phosphate synthase 1
1114	 60.94	0	1227369..1228625	+	418	50842610	-	PPA1131	-	tryptophan synthase subunit beta
1115	 63.05	0	1228622..1229119	+	165	50842611	-	PPA1132	-	tryptophan synthase alpha chain
1116	 58.25	0	1229065..1229955	+	296	50842612	-	PPA1133	-	prolipoprotein diacylglyceryl transferase
1117	 59.14	0	1230077..1234594	+	1505	50842613	-	PPA1134	-	large subunit of NADH-dependent glutamate synthase
1118	 59.20	0	1234587..1236059	+	490	50842614	-	PPA1135	-	glutamate synthase small subunit
1119	 62.73	0	1236096..1236425	+	109	50842615	-	PPA1136	-	hypothetical protein
1120	 59.86	0	1236477..1238549	+	690	50842616	-	PPA1137	-	hypothetical protein
1121	 55.56	-1	1238728..1239123	-	131	50842617	-	PPA1138	-	hypothetical protein
1122	 58.33	0	1239148..1239375	-	75	50842618	-	PPA1139	-	hypothetical protein
1123	 58.88	0	1239385..1240257	-	290	50842619	-	PPA1140	-	putative transcriptional regulator
1124	 60.98	0	1240383..1241297	+	304	50842620	murQ	PPA1141	-	N-acetylmuramic acid-6-phosphate etherase
1125	 55.64	-1	1241275..1242834	+	519	50842621	-	PPA1142	-	PTS system, sucrose-specific IIBC component
1126	 54.28	-1	1242841..1243284	+	147	50842622	-	PPA1143	-	hypothetical protein
1127	 58.44	0	1243274..1244209	+	311	50842623	-	PPA1144	-	putative N-acetylglucosamine kinase
1128	 55.72	-1	1244212..1245216	+	334	50842624	-	PPA1145	-	hypothetical protein
1129	 48.08	-2	1245213..1246643	+	476	50842625	-	PPA1146	-	beta-glucosidase
1130	 52.88	-2	1246671..1246982	+	103	50842626	-	PPA1147	-	PTS system, lichenan-specific IIB component
1131	 49.80	-2	1246988..1248256	+	422	50842627	-	PPA1148	-	PTS system, cellobiose-specific IIC component
1132	 52.34	-2	1248298..1248618	+	106	50842628	-	PPA1149	-	PTS cellobiose-specific component IIA
1133	 59.54	0	1249066..1249416	+	116	50842629	-	PPA2379	-	hypothetical protein
1134	 57.96	0	1249423..1253085	+	1220	50842630	dnaE	PPA1150	-	DNA polymerase III subunit alpha
1135	 61.44	0	1253082..1253636	+	184	50842631	-	PPA1151	-	hypothetical protein
1136	 61.97	0	1253641..1254960	+	439	50842632	hisD	PPA1152	-	histidinol dehydrogenase
1137	 60.33	0	1254957..1256123	+	388	50842633	-	PPA1153	-	histidinol-phosphate aminotransferase
1138	 58.45	0	1256120..1256740	+	206	50842634	-	PPA1154	-	imidazoleglycerol-phosphate dehydratase
1139	 59.33	0	1256697..1257350	+	217	50842635	hisH	PPA1155	-	imidazole glycerol phosphate synthase subunit HisH
1140	 60.55	0	1257363..1258130	+	255	50842636	-	PPA1156	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
1141	 58.24	0	1258280..1259074	+	264	50842637	-	PPA1157	-	hypothetical protein
1142	 62.27	0	1259071..1259661	+	196	50842638	ruvC	PPA1158	-	Holliday junction resolvase
1143	 58.75	0	1259658..1260263	+	201	50842639	-	PPA1159	-	holliday junction DNA helicase RuvA
1144	 60.74	0	1260311..1261339	+	342	50842640	ruvB	PPA1160	-	Holliday junction DNA helicase B
1145	 58.12	0	1261364..1261831	+	155	50842641	-	PPA1161	-	translocase subunit
1146	 56.85	-1	1261862..1263562	+	566	50842642	secD	PPA1162	-	preprotein translocase subunit SecD
1147	 57.06	0	1263564..1264739	+	391	50842643	secF	PPA1163	-	preprotein translocase subunit SecF
1148	 59.18	0	1264736..1265269	+	177	50842644	-	PPA1164	-	adenine phosphoribosyltransferase
1149	 57.99	0	1265272..1266366	+	364	50842645	-	PPA1165	-	ion channel membrane protein
1150	 57.46	0	1266496..1268820	+	774	50842646	-	PPA1166	-	GTP pyrophosphokinase
1151	 60.59	0	1268885..1270168	-	427	50842647	-	PPA1167	-	putative ATPase involved in DNA repair
1152	 59.82	0	1270161..1270832	+	223	50842648	-	PPA1168	-	metallo-beta-lactamase superfamily protein
1153	 59.49	0	1270932..1272296	+	454	50842649	hisS	PPA1169	-	histidyl-tRNA synthetase
1154	 60.89	0	1272353..1273045	-	230	50842650	-	PPA1170	-	hypothetical protein
1155	 60.24	0	1273038..1273628	-	196	50842651	-	PPA1171	-	acetyltransferase
1156	 57.42	0	1273635..1278068	-	1477	50842652	-	PPA1172	-	fused activator of 2-hydroxyglutaryl-CoA dehydratase/hypothetical protein
1157	 57.52	0	1278152..1278796	+	214	50842653	-	PPA1173	-	TetR family transcriptional regulator
1158	 57.80	0	1278916..1279986	+	356	50842654	-	PPA1174	-	hypothetical protein
1159	 61.12	0	1280167..1281987	+	606	50842655	aspS	PPA1175	-	aspartyl-tRNA synthetase
1160	 62.19	0	1282092..1283477	+	461	50842656	-	PPA1176	-	recombination factor protein RarA
1161	 58.87	0	1283474..1283935	+	153	50842657	-	PPA1177	-	hypothetical protein
1162	 59.99	0	1284081..1286759	+	892	50842658	alaS	PPA1178	-	alanyl-tRNA synthetase
1163	 62.53	0	1286756..1287238	+	160	50842659	-	PPA1179	-	endonuclease
1164	 54.14	-1	1287235..1288344	+	369	50842660	-	PPA1180	-	aminodeoxychorismate lyase
1165	 61.59	0	1288376..1289182	+	268	50842661	-	PPA1181	-	shikimate 5-dehydrogenase
1166	 63.07	0	1289196..1290392	+	398	50842662	-	PPA1182	-	chorismate synthase
1167	 62.30	0	1290389..1290892	+	167	50842663	-	PPA1183	-	shikimate kinase
1168	 58.75	0	1290895..1291980	+	361	50842664	-	PPA1184	-	3-dehydroquinate synthase
1169	 59.10	0	1292023..1293264	-	413	50842665	-	PPA1185	-	putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation)
1170	 54.99	-1	1293265..1294215	-	316	50842666	-	PPA1186	-	hypothetical protein
1171	 57.37	0	1294492..1295061	+	189	161621796	-	PPA1187	-	elongation factor P
1172	 59.16	0	1295058..1295843	+	261	50842668	-	PPA1188	-	putative NusB-family protein
1173	 56.70	-1	1295939..1296259	+	106	50842669	-	PPA1189	-	integration host factor
1174	 60.33	0	1296314..1296913	+	199	50842670	-	PPA1190	-	guanylate kinase
1175	 62.93	0	1296934..1297281	+	115	50842671	-	PPA1191	-	DNA-directed RNA polymerase subunit omega
1176	 61.56	0	1297294..1298526	+	410	50842672	-	PPA1192	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
1177	 59.72	0	1298566..1299759	+	397	50842673	-	PPA1193	-	S-adenosylmethionine synthetase
1178	 61.02	0	1299798..1301816	+	672	50842674	-	PPA1194	-	primosome assembly protein PriA
1179	 61.08	0	1301835..1302782	+	315	50842675	-	PPA1195	-	methionyl-tRNA formyltransferase
1180	 60.64	0	1302779..1304155	+	458	50842676	-	PPA1196	-	tRNA/rRNA cytosine-C5-methylase
1181	 51.88	-2	1304295..1305065	+	256	50842677	-	PPA1197	-	hypothetical protein
1182	 58.04	0	1305348..1306193	+	281	50842678	-	PPA1198	-	cAMP factor
1183	 58.63	0	1306372..1307043	+	223	50842679	-	PPA1199	-	ribulose-phosphate 3-epimerase
1184	 59.80	0	1307060..1307845	-	261	50842680	-	PPA1200	-	hypothetical protein
1185	 59.55	0	1307978..1309987	+	669	50842681	-	PPA1201	-	putative methyltransferase
1186	 60.26	0	1310062..1310451	-	129	50842682	-	PPA1202	-	hypothetical protein
1187	 53.04	-2	1310448..1312634	-	728	50842683	-	PPA1203	-	membrane spanning protein YhgE
1188	 56.95	0	1312638..1313543	-	301	50842684	-	PPA1204	-	hypothetical protein
60.05	MEAN

3.20	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.